Array 1 191757-194635 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGVQS010000001.1 Listeria monocytogenes strain 7461 7461_NODE_14_length_199914_cov_113.043907, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 191757 36 100.0 30 .................................... GATTTTCGTGTCGTTTATGTCAGTGATTGC 191823 36 100.0 30 .................................... ATAGAATTTAAATGATTAGAAGGGAACTCT 191889 36 100.0 30 .................................... TCTAAACGATCCATTTGTATATTGTGTTAC 191955 36 100.0 30 .................................... TTGTAATCATCTTCACTTCTCATATATAGG 192021 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 192087 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 192153 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 192219 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 192285 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 192351 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 192417 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 192483 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 192549 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 192615 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 192681 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 192747 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 192813 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 192880 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 192946 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 193012 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 193078 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 193144 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 193210 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 193276 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 193342 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 193408 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 193474 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 193540 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 193606 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 193672 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 193738 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 193804 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 193870 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 193936 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 194002 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 194068 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 194134 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 194200 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 194266 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 194332 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 194399 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 194465 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 194531 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 194597 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [194622,194628,194631] ========== ====== ====== ====== ==================================== =============================== ================== 44 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 39177-37848 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGVQS010000016.1 Listeria monocytogenes strain 7461 7461_NODE_21_length_54112_cov_84.598572, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 39176 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 39110 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 39045 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 38981 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 38915 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [38906] 38847 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 38782 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 38717 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 38651 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 38587 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 38522 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 38457 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 38392 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 38329 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 38266 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 38200 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 38137 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 38072 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 38006 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 37941 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 37877 29 93.1 0 .......................C....C | A [37852] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //