Array 1 5405-5616 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAL01000007.1 Lactobacillus crispatus strain NCK967 NODE_7_length_88229_cov_178.255053, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5405 28 100.0 33 ............................ AAGGTAAGCAACAATGATTTTGGACGTGATTTA 5466 28 100.0 33 ............................ TGAACCAGATCAGTAGTAGCAGGTGTTCCGTTA 5527 28 100.0 34 ............................ GTCACCCATGCGGGCTTCACCTTTGGAGATGTGG 5589 28 96.4 0 ................T........... | ========== ====== ====== ====== ============================ ================================== ================== 4 28 99.1 34 GGATCACCTCCACATACGTGGAGAAAAC # Left flank : TTGTAGTGTATTATTTGCCTGACTAAGCTCTGACATAATTTCTTTGAAGCATTCAGGCTTTAATTTAGCTTTTTGTTGTTCGAAGGCTGAAGCGGTCATTCTAGAATTCATGTCAGGAAAAGCATGAAAAATTTCCGAATTCAGGCTGCCAGCTCCCATGTTAAGAATTAACTTAATCAAATCAGTGGAATTGAGCTTACGACAGCGAGTAAAAGCTTGATCAGATACAGAGAAATCGTGAATGTTGTCAGCGATTTTATTGATAATACTATCCATCAGTTTTAAAATATTTGAGTGAAGGGATTTCATAAGAGGCACAGCTTTCTATGAAAGACCAGATAATATGACGAAAGTGAGCAGAAGGGTAAATAAACTCTGCTCACTTTTTATTTTAAAAAGAAAAAAGACCGAATCAAAATGATTCGATCTTTAAAAGCTGTCGATATAATGTCAATGTCTTAACTTAATGACATTGCAATTTAGGATTTGCTTTTTGTTAT # Right flank : CACTAAAAGAATCCCATCGTTAAGCCATTTAGATTTAATAAAAAGCTGAAATTTATTCAGTTTATATTTTATACAACAATAATTATACCAGTGCATCCCTTATCCTTCACTCCAATAAACAAATCCAAACTAAAAAAGTCCCAAACGGGACTTTCTTCACACATCTAATCTCTCAAAGCACGATTGCCAATATCATGGCGGTAGAAGCAATCTGGCAGATCAAGCTTACTCAAATAAGAATACACATTATCCTGCGCCTGGACTAAATTGTCAGCTTCCGAAATCACCATGAACAGGCGGCCGCCATCACCTATCAGATTATCCAAATCACCTTTGACGTTGGCGTAATCGATATAAGTATTGCTGCCATCAGGCAACTTGCCGATCTTGACGTTAGGTGCCGGATGCGTTGGATAACCTTGGCTGCAGACAACCACGCCCAAGATAGAATTATCATTTTCTTCAATCTCAGGCAATTTTTCATGATTTACTGCTGCGTC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCTCCACATACGTGGAGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 73538-74362 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAL01000009.1 Lactobacillus crispatus strain NCK967 NODE_9_length_77066_cov_162.801548, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 73538 29 100.0 32 ............................. TAGAGAAGTTTGGACTTTAAACGACTTAAATT 73599 29 100.0 32 ............................. TGTGCTACCTTTTCCCATGACAAAATAAGTCG 73660 29 100.0 33 ............................. CGTGGCAAAATGATAGCCATGCAGGTACATATG 73722 29 100.0 32 ............................. AAACCGTTATGATGTTAGGTTTTGCCTGAAAC 73783 29 96.6 33 G............................ CTTCGTTATGCCAACCGCTTTTTTTGCTGGGCT 73845 29 100.0 32 ............................. GCTGGCAAACAGACGACTTAGCAGGGCGTTTG 73906 29 100.0 32 ............................. ATTTCATAAATAGTCATAGCCTAATCCTCCTT 73967 29 100.0 32 ............................. GAAGCCACAAGTGCAGATGTATGAGATGGATT 74028 29 100.0 32 ............................. CAGAGATTGGGCATTCTGGCTTAGAGATATCC 74089 29 100.0 32 ............................. TAAGCAAGAAACAGGCTTCATGCCGCAAGATT 74150 29 100.0 32 ............................. CCCCTTGCGTTACCTAAGTAGTAGCGACCGGC 74211 29 100.0 32 ............................. ATATGGAGGACATATCAACTCCTTAAAATTTT 74272 29 100.0 33 ............................. GTCACCCATGCGGGCTTCACCTTTGGAGATGTG 74334 29 93.1 0 G................T........... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.3 32 AGGATCACCTCCACATACGTGGAGAAAAC # Left flank : TTCTTGAATATAAGGCATTTGTTCGAGCAACTCTTCTGGAGTTTTCGCACGTCCACCTTTGTATTCGCCGTACATTTTTGTTCTAAAAGTGACTTTTCCTGCATCAAAAGCTACCAATACGTGGGTCGGATCAACGTCTTTTAAAAGGACATCGAGCATGTTCTTAAAAGCGTAAATGGCATTGGTATGCAGGCCGTCTGGACTCTTGAAAGATTCTAGTTGACGATAAAGAGCGTAAAAGGCTCTGAAAGCTACAGAGTTACCATCGATTAGAAGTAATTTTTTATCTGCCATTTTATTCCCCTTTTATAAAAATTGTTCTCTATACTTACTTATCTATTTTACCAGTTTCAAGGGTAATCTTTTAATAGGAAGTTTAATGGAAAAGAAAAAAGCTCCGATTATAGGACTTTTGCTTGTGATTTTTCTTTCACTGCGTCAATTTAGCTCCACTTTTGTGAAGAAAATAAAGTTTCAAATCGTGTACCAAAGTTATTGTA # Right flank : CTTTATCGAGGTTAGGACATGCTCTCTATACAAAACTAGACAAACTCGCTTTTCTAGTGAGTTATGGAGTCTTGTTAAAAGCGCCCGACTTTAGTCGGGCGTAGGTTGACGGTGTTCAGTTTTTTATGAAATTGTAACGTTATCTTAAAAATTGGTCTAAAATAGTGTTATATTTATGACGATAAGTCATAAAATTACGAAACTGTCAAATCTTTTGTGTAAATAGATCTTTCTCATAGATCGATTTTTTATTCTTTATTTAGTCAAAGTAAGATTCTAAGGTGTCCTGAACCTGACCAAAGCCCGGTCCTAAACAGCCAACTTCAGTTCCTGAACCAAATAAACTAACATCGGAGCCCAACAAACCTAGTGTGAAAACTAATAATGACAATCACGGTAAATCAAAGAAAAATTCAGGTACTACAAAGCATTCAAGCAGAAACACGAATAATAATCCAAAGGCTAGAAGAAACGTAAAACGTCAATATAACTCAAATAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGATCACCTCCACATACGTGGAGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 121989-122568 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAL01000002.1 Lactobacillus crispatus strain NCK967 NODE_2_length_145674_cov_133.049423, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 121989 29 100.0 32 ............................. GTGCTGGGGATTGGCGGTAAGACTGTAGCCAA 122050 29 100.0 33 ............................. TTGAAGAATGTTAACGCACAATTGCAACAACAA 122112 29 100.0 32 ............................. ATATTTGCTATTAAGCTACTACGACAATATTG 122173 29 96.6 32 ............................C AAGCCGGCACACTTGACTATCGTATTACTTCA 122234 29 96.6 32 ............................C TACAATGATGAAATACATTCAGCAAGGAAAAA 122295 29 100.0 32 ............................. TAACAATTCTTATATTTCTTTATTATTTAAAA 122356 29 100.0 32 ............................. GAATATGGATCCTCGCTAGCTTCTGTGTCGTC 122417 29 96.6 32 ............................C ATGGACAGTGCTCTCGTTGGGGCAGTTGCTAC 122478 29 100.0 32 ............................. TTGGTGCAGTGAATGAGAAATATGGGAATGCT 122539 29 82.8 0 ...........AC....T......T.A.. | A [122560] ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.3 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATAGGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGTAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTATAAACGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAATTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTAAACATTGGGAAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 144586-144919 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAL01000002.1 Lactobacillus crispatus strain NCK967 NODE_2_length_145674_cov_133.049423, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 144586 29 93.1 32 .............G..............C ATTACTGATGTCTGTAAAATCATAGTTCCTTG 144647 29 96.6 32 .............G............... AATATCATCAAGCTGGCTAATTACTGATTGTT 144708 29 89.7 32 T............G..............C CATCACAAAACATAGTGAAGCAGTTACACCCA 144769 29 100.0 32 ............................. GTTTCCACATACCTTGCATTCAGCTGATTTAA 144830 29 100.0 32 ............................. ATCTCTAGTAGCTCCTACAAAAACATCAATAT 144891 29 89.7 0 .......................AT.G.. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.9 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GACGATTATTAGTAATGGTTAGTTCATTTTTGCTTTCACCAATTAGTTCACAAACAGTAGAAGTAGACTTGCTTACATCAATTCCAAAAGTAACTTGCATAATAAAAACCTCCAAAACTTAGTAGTAAAACGTATTTACTTAAGAAATCAGATCTAATTTTCTAAACTCGACATCTAGTGTCCACATTCTTCGAAGAGACTATTGAAAACTTAAGTAAAACTGCCAGTTTATTATGCGACATCAAGTGTCTAAAGACCTCAGGGCATATCGTTTTACTACTACTTTAATTCTACAAAAGAATAAAAATAGTGAATCAATTATCCCGTCGGATAACTAATTCACTATTTAGCTTAGAATGTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : GTATTCTCCACGTGTGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //