Array 1 1717641-1717140 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030062.1 Mannheimia varigena strain Teagasc 1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1717640 32 100.0 34 ................................ AATGAAGCTATGCAATCATAAAGCTAAATAAAAA 1717574 32 100.0 35 ................................ GAGTTGCGGCACTTGAAGAAAAAGAGGGGCGTAAA 1717507 32 100.0 34 ................................ TAAATCTTGGAAAAACTCCTCCAAAATCCTATCG 1717441 32 100.0 35 ................................ AAGCCTTGTGCCATCTAGTATCCACTCGATTAGTC 1717374 32 100.0 37 ................................ TCGCACTCGTTGCTTAGTTGCTTCTGAGGCTCGGCGG 1717305 32 100.0 35 ................................ AATCAAAGAGGGATTGAATAGCTTAGGCAGTACGC 1717238 32 100.0 35 ................................ CAGGATTAAAGCGTTTATTGGCATTGTTAAACAGC 1717171 32 87.5 0 ......................A.C..A...T | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 98.4 35 GCAGCTACCTTCGCGTAGCTGTGAGTTGAAAC # Left flank : CTCGCAAAGGCTTAACCATTCAACGCTATAAAGGATTAGGCGAGATGAACCCAGAGCAATTATGGGAAACTACAATGGATCCGGTCGCTCGGAAAATGTTGCAAGTAAACATTACCGATGCTATTGCCGCCGACAAACTTTTCAGCACCTTAATGGGCGATGAAGTTGAACCACGCCGCGATTTTATCGAGACTAATGCGTTATATGCCCAGATTGATGTGTAGTTTAAAATTGAGATCCTCTATTGAGAAATAGAGGATTTTTTATGAAAATTATCTAAGTATCCTACAAACACTATTGTAATATATGAGTTCGCTAACCTATAGTTCTCATTAAAATTGTAGTAGGTTAGCGATTTTACTTATTCTTTTATAATCAATATATTATAAATTTCACCTTAAATAATTTTGATTCTGTTATACTAGAGCAACTCGTTGTATAAGAGCTTAGCGAAAATGGCACTAATAGGCCTTGTAGCACAATGATTTCTTATATAGGGA # Right flank : TTCCTATTTCTACCCCTTCTAAAATAAAACAAGGATTTTTGTTTTTCTATCCAAAATGGTACACTTCATTGAAATGAATCACTAAGGATTTTCAAAATGAGTAGTACAGAATTATTAGTCAATGTTACCCCAAGTGAAACAAGGGTTGCGTTGGTTGAAAATGGGCTATTAAAAGAGTTGCATATTGAGCGTGAGGCCAAACGTGGCATTGTGGGGAATATTTACAAAGGGCGTGTAACTCGAGTATTGCCCGGAATGCAATCTGCTTTTGTGGATATTGGTTTAGAAAAAGCGGCTTTTTTGCACGCCTCCGATATTGTTTCTCACACTGAATGTGTTGATGAAAATGAGAAAAAGCAGTTTGTAGTAAAAGATATTTCAGAGTTAGTGCGTGAAGGGCAAGACATTGTTGTTCAAGTGGTAAAAGATCCGATTGGCACAAAAGGTGCGAGACTAACTACTGATATTACCTTGCCCTCTCGTTATTTGGTTTTTATGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACCTTCGCGTAGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCTACCTTCGCGTAGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1879936-1878767 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030062.1 Mannheimia varigena strain Teagasc 1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1879935 32 100.0 35 ................................ AGCTTCGAGCCGTCCAATGTAGGCAAACTACCTAA 1879868 32 100.0 34 ................................ TGTCTACCTGTTCAATGTTAATCACCAAAACAGC 1879802 32 100.0 35 ................................ CACAAACGTATGCTGAAGCATTGCGTTTGGCGGCA 1879735 32 100.0 36 ................................ GGATCGCTTAAGCCTTTTTTGTATTGATATAAATTG 1879667 32 100.0 35 ................................ ACAAACAAGAGGAGTAGAAAGTTATGAGCGTTGAG 1879600 32 100.0 36 ................................ CATTTTCTCCCCCTCGAATGACGAAAAATGAAATTT 1879532 32 100.0 34 ................................ TCGCGATGAATAAGATGGAGCAGAGAACCTACAC 1879466 32 100.0 38 ................................ AAACATTACAATAAACCAGAAAATATACCAGAGTTCTT 1879396 32 100.0 35 ................................ TAGGTAATGAGCAAATTGGCTTGAGGTTGCCACCA 1879329 32 100.0 34 ................................ GACTTTATCTGAATTAATATCTTTAGTATAAGCT 1879263 32 100.0 35 ................................ CGTAAAAAGATTTTAGCTGTCGATGGCGTAAATAA 1879196 32 100.0 34 ................................ CTCAATATTTTCAAGTAATTCAAACAGATAATAC 1879130 32 100.0 34 ................................ AGGGTCTTTATTATCAACTACTACCCCTCTATGT 1879064 32 100.0 34 ................................ TCGCAATGATTTTGTTGTTCCCACCTCAACATAA 1878998 32 100.0 34 ................................ CACTTAATAGCGGTTCAACGGACGAATTAGGGGC 1878932 32 100.0 36 ................................ AAGCCGTCTTGAAATTTATGGTTACTTTTCAAGGTG 1878864 32 100.0 34 ................................ TTATTTTCTCAAAAGCGTGATTTTCAGTCTGTGA 1878798 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 18 32 100.0 35 GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC # Left flank : GCAAGGCTATGATGATGTTGATTACCTACGATATTTCTTTCGATGACCCCGAAGGGCAGAAACGCCTTCGCCACATTGCCAAACATTGCCTCGACTACGGCGTTCGAGCCCAATATTCCGTATTCGAATGCGATGTTACCCCCGACCAGTGGGTTAAACTCAAACAAAAGCTGTTGGCGACTTATAACCCTGAGCTTGACAGCCTCCGCTTTTATCATCTCGGTAGTAAATGGCGTAACAAAGTGGAACACCACGGAGCGAAAAAAGCGGTGGATTTGTTCAAAGATACACTGATTTTGTAATATGTAGTACATCGCTAACCTGTTGTTCTCACCAAAACAGGGGGAGGTTAGCGATCATCAAAGTTCTTTAATAATCAATAAGTTATAAAAAGTATTGGCTCAATTTGAATTGTGCTATACTAAAAATACTTCCTATACAGGCGTTTAGCGAAAAGGTGCTAACAAAGCCTTGCAGCACAATGCTTTTGCATATAGGGA # Right flank : AACCCCTTTTTCTCTATCTGTTAAAGACATAAAAAGTGGTTACCTTCACGTAGCCATAAGTTGAAATCTTGGGATTCAGATATAATTTCTTAGACATTTTGTAGCTATTTTCATGTCACGATAATTGGAAATATAAATAAAGGTGCATTGCTGCACCTTTATTACTATTATTGAACCGTTGCTTTAGTACGCGACTTTTTCACTTTGATTTCCGCTTTCGGCAATACTTCAATTCCCATCGGTGGGTTTTCAAGAGCAATTGCAAGCACTTCATCAATCGTCTCTACGGCGTGAATACGTAATGCTGCTTTGGCATTTTCCGGAATTTCCTCCAAGTCTTTTTCATTCTCTTTTGGAATAATAACCGTTGTAATACCACCTCGGTGGGCTGCAAGTAATTTCTCTTTTAAGCCGCCGATTGGCAATACTTTTCCACGTAGGCTGATTTCGCCTGTCATCGCTACTTCTTTACGAACAGGGTTACCTGTTAGGCTCGAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //