Array 1 32888-33282 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYUR01000037.1 Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001697 contig00037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32888 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 32949 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 33010 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 33071 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 33132 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 33193 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 33254 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GATGCTGGGTATGGCAGGTATGATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.10,-14.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5-703 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYUR01000039.1 Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001697 contig00039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5 29 86.2 32 TGT.A........................ TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 66 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 127 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 188 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 249 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 310 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 371 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 432 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 493 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 554 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 615 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 676 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17410-18720 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYUR01000039.1 Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001697 contig00039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17410 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 17471 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 17532 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 17593 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 17654 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 17715 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 17776 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 17837 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 17898 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 17959 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 18020 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 18081 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 18142 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 18203 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 18264 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 18325 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 18386 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 18447 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 18508 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 18569 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 18630 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 18691 29 93.1 0 A...........T................ | A [18717] ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACACCCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //