Array 1 86295-88093 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPRE01000004.1 Dehalococcoides mccartyi strain SG1 opera_scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 86295 29 100.0 31 ............................. ATACCTAAGTACATAACAGACAGGGTAGACC 86355 29 100.0 32 ............................. AATGGACTTTATCTAAAACAAAAGAGGGTTTG 86416 29 100.0 32 ............................. CATCCGCTATATCGTTCCAGCCTAGCCTAATC 86477 29 100.0 33 ............................. CAACTGCACTCAGGACTGTTCTAAGCGTTTGGC 86539 29 100.0 32 ............................. GAAAACTATCAGCTAATATTTGAGCATACGCA 86600 29 100.0 32 ............................. TCCTGCCCAGAGAAATACGGGTTCGGCTTAGT 86661 29 100.0 32 ............................. GCTACCTCTATAAATGGCTTCAAATCCAAATT 86722 29 100.0 32 ............................. ATTGCTATTCATTATTTGGCTTGCTTAAGGCT 86783 29 100.0 32 ............................. TGGTTCGGGCTGTCCGATGCCGACTTTAAAAA 86844 29 100.0 33 ............................. TGTCAGTTCCTTGTCTTCTTCAGTTTCACCAGG 86906 29 100.0 32 ............................. GCACCTGTACTGGCGGTACGCAATAGATGCAC 86967 29 100.0 32 ............................. AACGCGGGCCAAGACGGGATATCCTCTACTGC 87028 29 100.0 32 ............................. AAATCAAGGCCAGCGGTGATATGTCCAGAGAC 87089 29 96.6 32 ............................T GGAACTACAGGATGGGTAGCGAAAAGACTAAA 87150 29 100.0 32 ............................. GTGGTTATGAAAAACGCTTCGTTCTGGTGGAA 87211 29 100.0 32 ............................. AGATGACCACCCGTTTATACGCACATCTGTCT 87272 29 100.0 32 ............................. GCCTCTTTGGCTACTCGATGCTTGACTCCTAG 87333 29 100.0 32 ............................. CCCTAGCGATGCGGCATATTTCAAAGAACAAA 87394 29 100.0 32 ............................. TGATGCAATCATAGAACAACTAGCCAGAGAGT 87455 29 100.0 32 ............................. TCCGGCTGGACAGCTGAAAACTGCTGGGTACG 87516 29 100.0 32 ............................. ATATGTGCAGTATCGTTTGACCACTGTAGCAC 87577 29 100.0 32 ............................. GGCTAATATTACTTCAGACCCGATACCCAGAG 87638 29 100.0 32 ............................. ATAATTACTCTGGTGTATCAACTTATGCTGAT 87699 29 100.0 32 ............................. GTAGGTGAGCCAATCGGTCCTGGTACTGTCCC 87760 29 100.0 32 ............................. CCGGCATCGGTCTTTTTCCAACCTAGTTCCGA 87821 29 100.0 32 ............................. TAACCTCCGCCGCCGCCGCCACCGCCTTCTCC 87882 29 100.0 32 ............................. CAGTCATGGCAAATGTACTTCCCTCGGTGTAA 87943 29 100.0 32 ............................. TCATTAAGGCAAATTAGAGGCCTTACTCAAGG 88004 29 100.0 32 ............................. TAGCAGATAGAATACATATGCATGCTACTAGA 88065 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.8 32 GTATTCCCCACGCATGTGGGGGTGAACCG # Left flank : CTATTCCAGTGGCGTTCAAGGTTGCAGCGGCCAATCCAACCGACCTTGAACGCCAGGTAAGAATTGAATGCCGGGAGGCCTTTTATGAATTCAAACTCCTTGAAAGGCTATTGACGGATATTGCGGAGGTACTTGGTGTTAGTGATGATATTGGAGAAAGTCCCGACGAGTTTGAGGGGCGCATTGTCACGTTGGCTATTGGAACCGAAGACGGGAGTTTTTCTTGGGAACCCGAGCGCTCGGGTGAGGGATGAACTCTGGGAACGGGCGATAAATAAGACGAAAGAAAGCGGTGCTATCCTCCAGATTTGGACAGACCAGAACTCCCAAGGATTTTCTTCCCGCCAATATGGTGAGAGGGAGCGGACTTTTGTTGATTTTGAAGGGTTATATCTGGTAAAAATAGACAAGAATACCAGCACTATCAAAACGCAAAATTCTGACACTACAAACCCCTAATCAGGAATGACCTGTTTTAAGGTCAGCTTTGTTATTTTAGG # Right flank : AAAGTTGAGGCATTGACTCAGGCAATATGCTGTGTAGTTTCTGCGTTACCGGCCGGTAAATTGCCAGCTTACCGTGTCATTGCCGGTGGAACAGGATATTGCCCGCCTTTCAGCGCCTTGTAATTGGGATAAGATGATGGAAGTGTACTCAACTCTTGGACTCTATCCTAATGGGCATATAATGGCTAGCTTAAGGCAAAAATTAGGTAAAGGCATTTGTACCAACCGGGGTATAGAAAATCTGAAAGACGGGGATTACTTACTACTGCCGGATTGGTTATCCGCCGCCAGCGCCTCCGCGGAAAGGTAGTATTTATCACCCTTGAAGATGAACTCGGTCATATACACTGCATGGCATTCCCCGACACTTACCGGCAGAATGAGCTTACCTTCAAGCAGACTTTTCTGGTAGCAAGCGGTTATCTTTCCCGAAAAGATGGCGCTTGCAATATCGTGATTCAAAGGGTAGAAGCACTCAGCTTAGAAGCAAAAGTGCCTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //