Array 1 10595-10436 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKI010000004.1 Listeria innocua strain FSL W9-0531 NODE_4_length_289082_cov_66.925157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 10594 29 100.0 36 ............................. GACACATTCTTGCGAAACGAGTGTTTTTTAGAGTCA 10529 29 100.0 36 ............................. AACTGATATGCGTTATCTACTGTTTGTGTTTTTAAG 10464 29 86.2 0 ..............A...........GGA | ========== ====== ====== ====== ============================= ==================================== ================== 3 29 95.4 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : TGCCACAACCTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTTATTACATCGGATTCCATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACGATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAATATTAAACTCAAAAACAGTAACTTAGCATAGTGCTGTTTTTTTGTTTTTAGTAAACTGTCGACCAGCAGTAACGTAAAAAACACCGGAGACCGACATAAACTTGTGAATGCTTGAAGGAAGTGGAGTTTGGAGATATTTGCTTTGAAAAAGTATGCTAGCAAAAGTAGATTTTATCTGATTTGGAACAGGTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGCGCACGG # Right flank : AGCGGCTTTAAAGAAATTACTAAATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGAAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAAAAAGTAGATATTTCGGAACCGTGGTATTTAAGTAATGATAAATATGTCGCGGTTGAAAACTATATTGCACTTGAAAAAAATGAAGAATATACCTTCTTTCTAAACGAGGGTGACGATAAAATAAGTTCTATAGTTAGCTTGGGTTACGGTAAATTCAGTGAAAAACTCCAAGAAAAACAAG # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 18280-20638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKI010000001.1 Listeria innocua strain FSL W9-0531 NODE_1_length_1153484_cov_50.457996, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 18280 29 100.0 35 ............................. TTTTGGGTGGATTAATTTCACCTTTTCTTCTACAC 18344 29 100.0 36 ............................. AAAGATAACTATGATTTTGCTGATGTTTCTGACACG 18409 29 100.0 35 ............................. AGCGCTGCTTTGAGTAAGTTATTTTCTTCTACTGC 18473 29 100.0 37 ............................. AAAATATTGGGGTGTTTAGCAAGTTGTAAGACGCGAT 18539 29 100.0 35 ............................. GTAAAATGTACCATTCGCATTTTCATCTGTTTTAA 18603 29 100.0 35 ............................. CAGCCACATAATGGACTGGCGCCATTTTACCTTCG 18667 29 100.0 36 ............................. CATACTGTTTCCAGAACAGTTGTTTACTGATGTTCC 18732 29 100.0 36 ............................. TTAATAAAAATAGCTTGGGGGTAAGATGATGCTAAC 18797 29 100.0 37 ............................. TTTTTAGCGTTATTCTTAATCGTAGCACCAGCGTTTT 18863 29 100.0 34 ............................. CTGATTAAGAGTTGGTTTTGTGTTGAGCAGTTAC 18926 29 100.0 34 ............................. ATAAGTCCGGCTACTTTCGAAAACACGCTACTAA 18989 29 100.0 34 ............................. TGTTCTTCGTAAAACCGTTTGTTTTGAGTACATT 19052 29 96.6 36 A............................ TCACTTTTACTGTTTTAAGAACACTGGATAATCAAA 19117 29 100.0 36 ............................. ATTGGTTTGATAAAGATCAAAACCAAGTTGCTGAAA 19182 29 100.0 35 ............................. GAAGAAGGGGTTATGGAAAAGGAACTAATTATAAA 19246 29 100.0 35 ............................. ATATACGAGTGAAAGGAAGCGTCTAAATGACTAAG 19310 29 100.0 36 ............................. ACCTTCATAAGCAATGCTAATAACTTCAAAAGTCTT 19375 29 100.0 35 ............................. CGACAAGGAGATTGCTTTATTGAAACGGGAAGATA 19439 29 100.0 35 ............................. ATCGATGCCGCAGTTTCGAAAGCAAAAGCTTACAC 19503 29 96.6 34 ......G...................... ACAATTTGTGAGTTCAGTAGGTTTATCCCCACTC 19566 29 100.0 35 ............................. AAAGGTTCGGACTTGGAGAAAGTAGCCGACTATTT 19630 29 100.0 36 ............................. GTTGTCCATATGTCTAATTCTTTGATATACACTATT 19695 29 100.0 38 ............................. CTTCCTTTTTAGAGGCCTTTTCCTTCTCTTTTGCAGCA 19762 29 96.6 36 .............G............... TTATGAATTAGTTTTGTTTTATACGTTGTTTTTACA 19827 29 100.0 35 ............................. ATTGGAAAGTGTTCTAAAAGCACTTGCACAATGTC 19891 29 100.0 36 ............................. CTGATGTAGCTTATTTTTAACTGTTCGGTGAAATAA 19956 29 100.0 37 ............................. AAATACTTGCAAGTTTATCTTGATGCTTCTGACTATC 20022 29 100.0 36 ............................. CACGGTATCTACAATGAGCATCTGTCAAAAGACTGC 20087 29 100.0 36 ............................. TCAAGTGGAAATCGAATATAAAGATAATCATTTTTT 20152 29 100.0 35 ............................. CTATTGAGTTTTGTATTATTCCAGACTGGAATTCG 20216 29 100.0 34 ............................. ATCGCAATATCATTCCCTAAAATCATTTCTATTG 20279 29 96.6 36 .........................G... TTTGTTAACCCACTAGCTAAACCACCAGCGCCCTTC 20344 29 100.0 37 ............................. TTGATTATCTTGTAGGCCGCACAGACAATCCGCTTAT 20410 29 100.0 36 ............................. ATAAGAACAAACGGAACAAATGATATTTTAACGCTT 20475 29 100.0 40 ............................. CTCACTTCCACCACCTCGCATTCTGTGTTTGTTTCGTTGA 20544 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 20609 29 93.1 0 .......................A....C | C [20632] ========== ====== ====== ====== ============================= ======================================== ================== 37 29 99.4 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACATTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCTGCCACAACTACACAGCTTAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCGACACCAAACGTCTTGGCTGCGAGTTTGGTATTGGAGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGTCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //