Array 1 11648-9243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTA010000019.1 Scytonema hofmannii FACHB-248 contig19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 11647 37 100.0 33 ..................................... TTTAGCTGAAGTCTGGGAGCATCAATCTTTGAA 11577 37 100.0 35 ..................................... GGTGAGCTTGATGACATGAACTCTATTATCTCTGC 11505 37 100.0 35 ..................................... ATCTTACAGAAGCTTAAGAACTCTAGACTTATAAG 11433 37 100.0 35 ..................................... ATGAATAACCCTGTTACTAAAGGAGTGAAAGCGGT 11361 37 100.0 35 ..................................... ATTTGTTTGATGTAAGATTCATACTGCTGCTGATT 11289 37 100.0 34 ..................................... AGTAAGAAAACTTGGTAAAAGAAAGAACCAAAAG 11218 37 100.0 33 ..................................... AGCAAGATTACTAAAACTCAACCCGCACAAGGT 11148 37 100.0 35 ..................................... TTCATAAAAGAAGGTTCGGGAGCTTTTATCCAAAG 11076 37 100.0 33 ..................................... AATGCACCTTTATCTGGCAACGCGGGTAATTTA 11006 37 100.0 36 ..................................... GCTCTTGCCCACACAGCACTTACCACAAAGTTTTGC 10933 37 100.0 35 ..................................... TGGGCGGTCGGCTTTGTTATATCGAGAATTGTTGT 10861 37 100.0 34 ..................................... CCGGGGTAAGGTTATAATTCCCATTACAGGGAAT 10790 37 100.0 39 ..................................... GGGCAACCATCGGAATTAGAAGAATTATCAGAAGGCAAT 10714 37 100.0 31 ..................................... ACCCAGCACGCACTAGCCACCCCCGAAACTG 10646 37 100.0 37 ..................................... TTTTACGTTGATATGGAACAAGAAAATGTACTTGATA 10572 37 100.0 34 ..................................... ATTTTGTTGGACATTTGGGCAACAAGACATTTTA 10501 37 100.0 33 ..................................... ATATTGACGGAACTCTTACCACTACTATTTCTG 10431 37 100.0 35 ..................................... ACGTAAATTATCAAAGCTTGCTTGTCGTTCTGCCT 10359 37 100.0 39 ..................................... AGTGATAAAAGTTTCGGGAGTGCCAAAAAGCTGCTGGAG 10283 37 100.0 34 ..................................... CATTTGGGAAACATCACTACCGCTTGCATAATTT 10212 37 100.0 34 ..................................... TTATTTGCTACAAGGATTAGACACGGATAAAGAA 10141 37 100.0 36 ..................................... ATATTTACCTGTTTGAATAATATTTAAAAGATATAT 10068 37 100.0 35 ..................................... CGAAGTCTGCTAGTTCGGTTTCCCATTCTTTGAGA 9996 37 100.0 33 ..................................... AGATCGGTTGTGGGACTTTGGGCGTCGAGTATT 9926 37 100.0 32 ..................................... TTGCAAAAGCGACTTACCCCACTACTAGAGAC 9857 37 100.0 36 ..................................... ATGAGGTTTCTAAGGTTCATAGATGCCTACTGGAAT 9784 37 100.0 38 ..................................... CAGACTGGTTTTCCGTAACACCAACCATGAGAAAGTCC 9709 37 100.0 36 ..................................... TGCAATAAGATTTGTTGCAGAGATAAATGCAGGTAT 9636 37 100.0 34 ..................................... AAGGGTTCGGAGTACCGAAGTTCCGGAGTACCGG 9565 37 100.0 33 ..................................... ATAAAGACTGATTATTATCCGGATAATCCTGGA 9495 37 100.0 35 ..................................... AGTCTCCCAACAGGTATTACACTGCGGGATGCCTG 9423 37 100.0 36 ..................................... GGAAAAGAAGTGGTGCCGGTGCCTCCTTGATTCACG 9350 37 100.0 34 ..................................... TCCCTTGTGATTTTTTTTCCTTCTCCCTGCATAA 9279 37 97.3 0 ................C.................... | ========== ====== ====== ====== ===================================== ======================================= ================== 34 37 99.9 35 GTTGAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : AATGCCATTGCATCGCGATCCAATGCGATTGCATCGGGTGACAATGCGATTGTATCGGGTGACAATGCGATTGGATCGCGATCCAATGCGATTGGATCGCGATCCAATGCGATTGCATCGGGTGACAATGCCATTGCATCGCGATCCAATGCGATTGCATCGGGTGACAATGCGATTGTATCGGGTGACAATGCGATTGTATCGGGTGACAATGCCATTGCAGGGTGTTGCCAAATTTAATTTGCGACCAATTTAAGCAATATTGTATTTAGTGCGCGGATGGGTAGGTGTAGAAAAAGAGGTTTTAATAAAAATGCCTGAATCGCGCTCATTACAAGGCTTTGCGGTTCTATTTACTCGCCACCTACCCGCGCACCTTACACAGTAAAGGTTTCAGCTTTTTTAAAATGAGTGCGATCGCGCCAGATTGTGTTATGATTTACCCATCCGCGCAACCGAACCTTGAAAACCTCATACTGACTCACTTTGAGCTTCCCGCA # Right flank : CCCACAGTCGTCTCGGCATTTGATATACATTTGAAGGGGCGATGTCTTCTGACGCGCCGCGATGCACTAAGCTTGTGACGAAGGATGACAACAACGCTGCTAAACAATCGCTATCAAGTAATCGAGGTACTCGGTGCCGGTGGGTTTGGTGAAACCTTTCTGGCAGAAGATACCCATATGCCTTCTCGCCGTCGCTGTGCGATTAAGCAACTCAAACCGATCGCCGCAAACGATCCGCAAACTTACAAACTGATTCGACAGCGGTTTGAACGAGAAGCGGCGACTTTAGAACATCTTGGCAAAAGTAGTGACCAAATTCCCGAACTTTACGCCTACTTTCCTGAGAATGGGCAGTTTTATTTGGTTCAAGAATGGATTCACGGTCAAACCCTGACACAGTTTGTCGCAGCTAAAGGATTACTCAACGAAACAACTGTACGAGAAATTCTTTTGCGTCTGCTGTCAGTTTTGGATTACGTCCATAGCAAAGGCATTATCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 78108-78725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTA010000025.1 Scytonema hofmannii FACHB-248 contig25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 78108 37 100.0 36 ..................................... GGCTATTGCCTTATCTAATTGCAGTCGAGTCAATGG 78181 37 100.0 34 ..................................... GCTTGGGATATAAAACAAGGGATATTCCAAACCC 78252 37 100.0 37 ..................................... CTATTTCTCGCTTCATCCCAACAGCGGTTTTAAGGAC 78326 37 100.0 34 ..................................... TGCAAAGGGATCATCTTTATTTCATCCTTTGCAG 78397 37 100.0 41 ..................................... GTTGATTTTTCGATATCGATGGCTCGTTAATCGACAATCGA 78475 37 100.0 34 ..................................... ATTCCCGCAACCCGCACTCCCTGCTTTTCGGCAG 78546 37 100.0 34 ..................................... AAGCTATCTTTGTCTTTTTCGACAAAGCGATCGC 78617 37 100.0 34 ..................................... AACGACCAGAAGACGATCGCCACAAAGACAAGAA 78688 37 97.3 0 ....................................A | C [78721] ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 99.7 36 GTGGCAACAACCTTCCAGGTACTAGGTGGGTTGAAAG # Left flank : AGCAAAGGAATTAGCACTTTCTGCTTACAATCTCCGCCTAACTAGGCGAAGTTAACAAATATCTGAACCTTGATAATAGAATATTAATAGCGCCGCAATTCATGCTGCTTGCAGCCTCTGAATTTTGTTAAATGAGGGTTAGTTTGACTGTATAAATACAGTCTTGCTTTCTGACCCTGGTAGCTGCTCACCCTGATGCTGCTGTCAATAGACAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACTGAATCACCCCCGATCAAGGGGGAACCCTCCCCAATTCTTCATTTGAAGGACTAAAATCAAGGCAAAATTTCTAAGAGATCCGCGCAAGTTCCAAATACCTTATCTCGTCTTGATTTCATCTTTTTTTAACCAAGGCATGATTCTTGAGACTGAGGCTCAAATGAGAAATTGGGAAACATCCGCGCTGAAGATATCTGGAAAGGTTGGCTCACAACATTTTGTAACTGGGTAG # Right flank : ATCTTTTAAACCGAGATTAGTTTTGGGTTTCAGTAACTATTAAACTTAGGGGTGGGTTGAAAGCAAGTCCTTTTATCCGCTTGTTTTAATTGCTTTGTATAATAATTGCAGAGCATATTATATTGATGACATTTAATTTGTCATCAATTAATTAAGCAACGCTGATGGGTCACGACGACAATTAAATAGTCACAATGACATTAATCTGTCACCGACGACAGATAATTTGTCACTGTACACTACGCCTTTTGTGGAGATGTCTAATAAACTAAAAATTTTTGATAGTGCGGATAAAAGGACTTGAACCTTCACTCCTTTCGGAACTAGAACCTAAATCTAGCGCGTCTGCCAATTTCGCCATATCCGCATCAGTTTCCTATATTACCATAACGAATTATCTGTGGCAATAGGGATTCGGGACTGGGACAAGGAGGAATTCCCAATGCCCCATGCCCCATGCCCAATGCCCCATGCCCAATGCCCCATGCCCCATGCCCAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAACAACCTTCCAGGTACTAGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 77762-77135 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTA010000003.1 Scytonema hofmannii FACHB-248 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 77761 36 97.2 37 ..G................................. AGCATCGCACACTCAGAGTAGAAGTTGATGGGTTCTA 77688 36 100.0 35 .................................... TAGATGGTGTCGCCATAGCTGAAAACCACTCTTGT 77617 36 97.2 45 ....G............................... TTAATGGTTTCGGTGGCTGGATGAAAGGTGGCAAGAGTGTCACCA 77536 36 100.0 35 .................................... TTCTCAATCACTTCACCTGTGAACTTATCTACTGC 77465 36 100.0 34 .................................... ACAGGAGCAAACAAAGGTAGTGGTGTGGACATCA 77395 36 100.0 44 .................................... GGTTGTGTTTTCAACCCTTTGCTTGGCGATCGCTAACTCTGAGC 77315 36 100.0 34 .................................... CTCCTGTGTTTTCTCCTACGGGAATTTGGGCAGA 77245 36 100.0 39 .................................... ACCGGAACTACCTTGCACTGTGGGTCGGTGCTAGTGGGG 77170 36 94.4 0 ..............................AA.... | ========== ====== ====== ====== ==================================== ============================================= ================== 9 36 98.8 38 GTCACTTTTCTTCGGAGAAGTGGAATTAATGGAAAC # Left flank : TTGGGTTGACGTAACCAAACCCAACCTACACCGAATGCAGGATTTTAGCCAATACGCGCTACTACGAAACTACTAGAAGAGTTGAAACCTATGCTGGTTATACTTGTGTGTACACACAAGTCGAATTACCCCCCTTAATCCCCCCGATGGATTGGGGGGAAATTAGAAAATCTAGTTCCCTCACGCCACTTGCTACAACGGAGGGAACCTCCGCAACGCAGTGGCTCCCCTTTCCAAGGGGAGGGTTAGGGTGGGGTAATTCGAGAACTGGTAGTGATTCGATAACTTGTGTGTACACCGTAGTACTCCTCCACACCCTCGCGACGGGGTAAGCAATGTGCTTCAAACTCCTAATAGTTCGTTGACCCCGCCGATATCTTGTTGTATATAGGTTTCAGACGTTTTATACAACCCCAAGATGTCATTTCAGCCAACTGGTGATAAACCCCGTCGCAAATCGGGTCTTGACATTCGGTGGAGTAGGGGTTTCAATTAGAGGG # Right flank : ACAAAAAAGGGGCAGAATATTCTGCCCCTTTTTCATTTCTCAACTCAAATAATCGTCGAACCGGGAATCTCAATTACAGGTGGTTCACCCCAAGTTTCAATCTGATTTAAAGTATGCTTCGTTATCGGATAAAACCGTACCTTATCTTCACATTCATGACGTACAGAATATTGAATTAACCGCAGATGAAGATAGATAAACGCCGATGGACGCAGATAAATTTGTACCTCAGTTCCTCATTCGCTTTTCAGGACTCGACACACCCAGACATTAAACATAGGATAGAAAGTAAAGCAAATTCAATAAAATATTCCTCTTAAATTTCTGCCTTTCATATTCCGATGTCTGCATCAAATATCTGCCACTTTCTCATCGGTGTTCCCGGTAGCGGTAAATCAACCTTCGCAACTGCACTCTGCAAACTCGGTAACTATGTCATCGTCTCTACCGACGAAATTCGCGCTGCACTCTACGGTGATGCTGCCATTCAAGGCAATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTTTCTTCGGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 9268-10812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTA010000031.1 Scytonema hofmannii FACHB-248 contig31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 9268 36 100.0 34 .................................... CCGAAGGTGGCATTTATCAGCCTCTTCGTTTACT 9338 36 100.0 36 .................................... CTTTAGATTAACGTGTAATACGCAGGAATCGGTCCG 9410 36 100.0 40 .................................... GATTTTTTGAAATCAAGGCAAACCCAACTCGAAGCTTAGA 9486 36 100.0 36 .................................... GCTATAATGGGTGCCATTTACATGCTCAACAATTGG 9558 36 100.0 34 .................................... CAGGTTAGAAGGCTGGGTGCCTTGATATAAACTA 9628 36 100.0 34 .................................... CCTAAGTCAAGTTTTTGCAAACAAGACTATCCTT 9698 36 100.0 32 .................................... TAGAAACTCTGAAACATCAACTTTCGAGGTTT 9766 36 100.0 37 .................................... TAGTCTTCGTAATTTTCTCTAACGAGAACAAGACGAG 9839 36 100.0 38 .................................... CTGTCAAGCTAGTGGGAGATACAATTAGATCTACCGCT 9913 36 100.0 39 .................................... GATTGCAACGAAAAAACCAACAATCCCAGCAGCGATTGA 9988 36 100.0 35 .................................... GCCTGGTCCCTTGCTTTAGAAACTTGCTCTCTAGT 10059 36 100.0 34 .................................... GCTATGTTTCCACAAGTCGCTTTGATCGTTTTGT 10129 36 100.0 36 .................................... ATTTGGCTGCCGGGCTGCGCCGTGGGTAGCCATTGA 10201 36 100.0 35 .................................... GGTGTTCTTGACACCCACCCCAAGCCACTAAAGGC 10272 36 100.0 35 .................................... ACTACACGAGCATTGTGTGCATCGTTGCTAGCGAC 10343 36 100.0 35 .................................... AATATCGAGCTTCGCTTGGTCAGCAGCGATTCTTA 10414 36 100.0 37 .................................... GTTTATGTTGATGACTTTGGTCACTGGCTGCGCTGCT 10487 36 100.0 37 .................................... GGCAATCTTCCGCTGAACCTGTTGTGCGTCATCGTTT 10560 36 100.0 34 .................................... GCTTAGGACTACGCTTAAGATGAGGCTTACGATC 10630 36 100.0 39 .................................... ATTCATTGGGAATGGTGAGGGCTACAAGATATACCAAAT 10705 36 100.0 35 .................................... AAAAAAGCCACGATGGAGACCAACGATAAAACCAA 10776 36 88.9 0 ............................A..TTT.. | A [10804] ========== ====== ====== ====== ==================================== ======================================== ================== 22 36 99.5 36 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : ATAAAGATGTTAGTGCTTGTTGTATATGATATTCCTGATGACAAAAGACGCACTAAGTTATCCAACTTTCTAGAGGGCTATGGGCGAAGAGTACAATTTTCCGTGTTTGAGTGTTTTTTAAGTTTGGACGAAATGCGGCAACTGTTTGAGAAATCAAAAAAACTAGTTAAACCATCCGAGGACAATGTGCGATTTTACTGGATATCGGAAGAGGCTGTTTCCAGGGTGTTAACTATTGGTAGTGAGGAACCAGCAGCACCGCCAAAGTATTACGTTATATAGGTTTTAGGATAATTAAGGAGGTTTTGTAACATGGTCATCGACGCATCTCGTCAAATCGCTGAAACCCTATCTTTTTCGTTGAGATGCGTCGATTGCTTACAGGCTAAGGGTTTGAGGTATGTATTTTGCTTAATTTTGGAGAACATGTATAATGTTTTTCAGAGATGCGTCGATTTGATGGCTGAAACCCTTACTGGGTAAAGGCTCCTAGACGAACA # Right flank : CAAAAAAATAAGCCCTGATATTTTTCAGAGCTTTTTTATTCCTAACAACATCGCTACAAATTATTTAAGCTATATTCAACTTTGTATACTTAGCGACTTGATATTGTATATCATCTAAAAAAATCACATCATCAGCTATTTCCGAAAGCTCTTGACTTAACATACCCTTCTTCGCAATAATAGTTACCTCTACACCACGTTGTTGTATTTCAGTAATGGCAGGAACAAAGTCACCATCACCACTCACAAGAATCACCCTATCTTGCTGCTTGACTTCCCTTAACATATCAACAGTAATTTTTACATCATCACCAACAGTTTTGACAGTATTGCTATCAATTCGAGGTAAAATCGGAAGTCCAATTACTTCATAACGCAAACCTTCTAAATAACTTACAAACCGCTTTTGTCCATCAGTCATCGGTGAATGAACACCAGTGTAATATTTAAAAGTGGTAGCATTTGCGCTTTGAGAAAGTTCTACCCGCAACGCATTATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 17287-21360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTA010000031.1 Scytonema hofmannii FACHB-248 contig31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 17287 36 100.0 34 .................................... TGTAGAACGGAGGGTCCTGTTGCCCCTCGTTTCG 17357 36 100.0 38 .................................... GTCACAGCGCAATTCATGCGATAATGGGTGCTATCTAG 17431 36 100.0 31 .................................... GTCAGAAAACATGGTCTGGTTTATTTCTTTA 17498 36 100.0 36 .................................... GTTTTGGGAATTGGATTGCGAGGTTTTAACAGTATT 17570 36 100.0 31 .................................... AAGTGCGTGATACACCGCAAATTATATCTTC 17637 36 100.0 37 .................................... AACTTTACTCCTGCCCAGTATTGCTGCTTAACTTCTG 17710 36 100.0 35 .................................... TTTTCAATCTCAACCTTCTGTTCACAAAGTGGACA 17781 36 100.0 39 .................................... CCGCAGCATGATCAAGGTTCGCCTGAGTCAACCATTCTT 17856 36 100.0 38 .................................... TTAGCAAAGGATGGTTGTCAGCTGCTGATGCATCTCGA 17930 36 100.0 31 .................................... AAGACAACACGCCCAAGGACCATAGGTAAAA 17997 36 100.0 39 .................................... TTGTTTCCGTCCCTCAAGCGCCATGCCCGGGCTAGAGGA 18072 36 100.0 36 .................................... AATTAGTACGCCGTCGTCTTTAGTCCAAACCATCGC 18144 36 100.0 37 .................................... ATTGCTGATGCAATTCTGAGATATGGATCACAGCCCC 18217 36 100.0 35 .................................... AAAACTGCATCTTCGATTGGCTTTACAGCGTCTGA 18288 36 100.0 37 .................................... CCGTGGAGAGTTAGGGGGATGGGGGGAATTTTTAACC 18361 36 100.0 40 .................................... TGTTTTTGCAAATCCTTTGGCAGCCTACGGTTATTTGACC 18437 36 100.0 37 .................................... TTTAAACTCAGACTAGCTCTTAATATCATATTAAGAG 18510 36 100.0 36 .................................... ATTAGGACCATTAGCGTGACATTCCTGCGCGCTCTG 18582 36 100.0 32 .................................... GTTACAGCGTCCTCCGTTTTGCTGAGGCGCTA 18650 36 100.0 39 .................................... CTTTGCGATAGGCACCGGTTGTTCTTTGGATTCATAATC 18725 36 100.0 34 .................................... TCGTCTGTGGGGTTTCCATCTGTATAGAGAACAA 18795 36 100.0 35 .................................... CGTATGATGCAATGCGTTGCTCTGGATCGTCACCA 18866 36 100.0 35 .................................... ATTTTCAGGGATTTCGACCTCAAATTGAGGTTCAA 18937 36 100.0 39 .................................... CTCGAAATCGAATCAGAGCAAATTTGGGGTAACCGTGAA 19012 36 100.0 31 .................................... TTAAAGTTACGAATATTCACACTTTGCCTGC 19079 36 100.0 39 .................................... CTTTAAGACCGCCAGAAATTGCAGATGCAAATTCAAAGT 19154 36 100.0 29 .................................... TTGCTCTCCAAATCTTGTCAGCCCCTCGA 19219 36 100.0 38 .................................... AATAAACAGTCACTTCCGTGACTGTTGTGGGGTCTATA 19293 36 100.0 30 .................................... AATCTTTCGAGCAATGAAGAAGAAAAACCT 19359 36 100.0 39 .................................... TTTCAATGGAGTTTCTGTCACCACAAATGGTTTGACTTC 19434 36 100.0 39 .................................... CTTTTTGGATTAGAGCGGGAAATGACCTGTTGGCTTACT 19509 36 100.0 38 .................................... GTTATTTGGCTGCACGAAACCATTTGGAGATTGATTTC 19583 36 100.0 35 .................................... ATTGTACCCAGATTCGCATGCTGAACTGGCAGAAG 19654 36 100.0 38 .................................... ATTGTACCCAGATTCGCATGCTGAACTGGCAGAAGCTT 19728 36 100.0 32 .................................... AATCAGAGGAGAGTTTGATAAAACCATTGAAG 19796 36 100.0 36 .................................... TATTCTGTTGATTTATGCCATTAAAATTTCCGCTTT 19868 36 100.0 36 .................................... TTGAATTTAGCGCAAATTCAACTTCAGAAGAGGAAA 19940 36 100.0 38 .................................... AAAAAGATTTACTTTAGACTGAGCGTTAAGTAAAACAC 20014 36 100.0 37 .................................... GGTGGAAGTACCTGTGGATTCCATTTTCAACATACCT 20087 36 100.0 36 .................................... ACGTAGAACGTGTGCAGACCATGGTGTAGTCCGCGG 20159 36 100.0 38 .................................... TCACAGGAAGTGTTGCTGATCCGTTACCAACTTAATGT 20233 36 100.0 38 .................................... GACTGAGGTTGCGGCTTGGTAAGAGCAGTCGGTTATTG 20307 36 100.0 36 .................................... ATTACGACGGATGGTTCTGGGTTGGACATATTGTCT 20379 36 100.0 32 .................................... TTTATTTCCAAGGGCGTAACGGCAGCTGTATC 20447 36 100.0 37 .................................... TTTCCACAGTTTGCACCTTGACGAGACGCAACTGCTA 20520 36 100.0 38 .................................... AAAAATTTGATCTTTGACAATGTGAAAGAATCCGACCC 20594 36 100.0 35 .................................... GGGAATGCTGTTATCAACGGCGACGTTGACAACTT 20665 36 100.0 35 .................................... TATACTTTGGGTCGCCTGGTTAGAATTGGCTCCCA 20736 36 100.0 36 .................................... CGAAATAAAGGCGAGAGAACTTTTTCTGAGCACGAT 20808 36 100.0 32 .................................... GTGGGGCGGGAGCTGGATGCTCCCTTGGAGGG 20876 36 100.0 41 .................................... CTCTTGTTGCAACGAGAGCGTGGCACTCGTGCGACAACTGC 20953 36 100.0 39 .................................... GTTTGTTGTGGTTCGACTTAATTGCTCATTATCTTGAGC 21028 36 100.0 38 .................................... CTCGATTGTTGGAGCAGGGCGGGAATTTCCTGGAACAA 21102 36 100.0 40 .................................... TACCCCTTCTCCCCGACAGGAGGAGGTGAAACTATTTACA 21178 36 100.0 37 .................................... CCTGAATTTTTTGGATTCCGAGCAAAACTCTTAAGCG 21251 36 100.0 37 .................................... GAGCTTGAAGGAGAATTGCCGATATTCTCATTACGAC 21324 36 94.4 0 ...............................C...A | A [21355] ========== ====== ====== ====== ==================================== ========================================= ================== 57 36 99.9 36 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : GATTGGGAAATGCTTTCAGTTTTTGATGTTTAGAAAAACGCGCAGTTTATTTTTTCTTGCATCTTGCACCAATTTTTATTGGTGTAATTTATTTTTTGTATTCTTTAAGTAAAAAAACTTATATTTACATTAATTATTAATTCTTACTCCTCAAAGAGTTGGTGATTTTTGCATATAATATTCGTGGTGATAAAAGATGCACGCTTGTTATCCAACTTTCTAGAGGGCTATGGGCAAAGGCTGGAGGAACCAGCAGCACAGCCAAAGTATTACGTTATATAGGTTTTAGGATTATGAAGGAGGTTTTGTAACATGGTCATCGACACCACTCAGCAAATCGCTGAAATGCCTATTATTTCGTTGAGTGGTGTCGATTACTTACTGGGCAAGGGTTTGAGGTATGTGTTTGAGTCAATTTTTGGGAGAATGTACTATACTTTTAGCAGTGGTGTCGATTTGGTGGCTGAAATCCTTACTGGGCAAAGGCTCCTAGACGAACT # Right flank : AAAGCCCTCTACAAATTCGAGGGCTTTTTTATTACTAACAAAATGTGATATTTAGCGATTATTTTGCCAGTGCTGACGATTATTTTTAGAGATGCGAACAACTTGATATTTTAATTAATGTTTTACTTAAATATCAAGTTTGCTTAATTACTTATCATTAGCAGAATCGGAATCTTGTTCTTCTTGAAAATCAGATTTTGCGGAATTGTATATTTCCCTGATAAAATCCTTATCTTTCGTCACTTGCTTTGTTGCAACTTTTAAGTTTTTTTCATTAATGGGCGCATCTGAAGAAACAAGAAACATGATTACTTTCAAGTAAGTCCAACCCATAACAGTCGAAAGAGCATAGAACGTAGTACCTGTTATTGCCATTCCTCCAGCTGTTCCTAAACCGGGCACTATTTTTAAAATAGAACCTCCGACTGAACTTAATATCATTCCAGGAATGATTGACAAGATATTTGTTCCTATTGCTGATGCAACTGATTTTAAAATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 31687-30920 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTA010000031.1 Scytonema hofmannii FACHB-248 contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 31686 37 100.0 36 ..................................... ATAGATGTTTAGTTAGTCCTGTTAACTTAGGGATGT 31613 37 100.0 35 ..................................... ATTCAATAAAAACCCGATTTGCCGCTTCAAAGGGA 31541 37 100.0 35 ..................................... ATTGAGACTGAGTTTCTTCAATAGGTTGTCCAACT 31469 37 100.0 37 ..................................... CTATTCCAGATATTCTTGTTCCTGATGCGATCGCTTG 31395 37 100.0 35 ..................................... AATCTATCAACAACTCTATATACTTTCTTTTGAAG 31323 37 100.0 37 ..................................... TCTTCTGCCGATATAAAATAAATCAAATCGCCGTCAG 31249 37 100.0 36 ..................................... CAATTCATCCAGGTTTGCAGAAGCTTCCTCAAAACT 31176 37 100.0 36 ..................................... ACTGTTCACATCTGTAAAGCGAATCTTCTTCTTCAA 31103 37 100.0 35 ..................................... ACGTTGCGCTTGGAAGAGATTTTTCGCAATTTCTG 31031 37 100.0 38 ..................................... ACCCAGGTGTGTTTTTGCAGACTCCAGGCGACATTCGT 30956 37 97.3 0 ....A................................ | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 99.8 36 CTCGCGCCGACTGCGTTAAGTCGGATTAGTTGGAAAC # Left flank : TTGTTGCATAAATGGAAGATAGGAAAAACCTCTCCCTCTCCCAGCCGTGAGGCTGTAATCTTTGTATTAAAATTTATCCTTGCTCTATTCAAAAGCGCGATTTTATGCATGAAGTACTTATTATGTCGGCATAGCAGCGTCGGTGAATGTGAAAGCGATTTCTAGCATTCAGTTATTGTAAAATGGGACTACAATGTGCAGATGCGATCGCCTCCAATGGTAATAATTATTTAGGGAAAAACCATAAAAACATCGACAAAGACAAGCGATCGCAGTAATATTTTGTTATCAGCTTGATGTTTGGCAGAGCGAAGCGGGGGCTAAAAGCTGGGGGGTTCTGCCAAAATCGCCAGAATCTAGACAGGGAAATGGTTACAGCCGTTGAATGTTGGAGGTAAATAGTAATTTATGTCAATAAGCGCGGCTGAAATCGACCTGTTTTTGAGGTCTGCCAAAATCTGTTCTGGAGTACTTGCTCTGCAAGGGTTTCAGGGGACGGA # Right flank : ACAACATATCCCCGACTTTTTCAAAAAGTCGGGGATATTAGAATTAGGGAGAAAAAATTAGTCAAAGTAAAAATCTAATAATTACTAAGGATTATTATTTACTTCCGGCTCCAAACCATAGCGACGTAAAATCAATTTACCCTGAGAAATAGTATTACTTACTCGCGTATCTTGAGTTACCCGAAAATGGTCAATATTTCCCTTATTCACATATCTGTCATACTGTATTCCTCCATGTTGCCTCAGAATAGCAGTATCACCATTAGACTCATCCAATAAACGTGTAACCGTGGCTAAAGTTTCTTGTAATTTGACTCGTTTATGCTTTTCTTTAACTCTATTGTAGTCAGCCCTAAAAGTATCTTGATATTCTAATCTAGAGAAAGGAATTAAATCACCGCAAAGTAAATCATCTTTACACTGATTCCAAATTAACTGTCCCCAGGTTGAAAGGGTCATTTTCCCATAAGCTTCTCCTAACATCGTTTCGGGAATTCCTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCGCCGACTGCGTTAAGTCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 3879-3489 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTA010000005.1 Scytonema hofmannii FACHB-248 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 3878 35 100.0 36 ................................... ATTTGGGGGTTGCTTCAACATTATCTTCTTTTTTAG 3807 35 100.0 35 ................................... AAGTGAATTCAGTCCTGCTCTTTCTACCAAAACGT 3737 35 100.0 36 ................................... GTTTGAGCGGTAGCAGCAGATATACAGAAAATCAAA 3666 35 100.0 36 ................................... ATTGGATATGCTGGTTCCAGCATGGTATGAATTTGA 3595 35 100.0 37 ................................... CTCATCAAAACAACGATTAGGATACCAGCGTAAAGGA 3523 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 6 35 100.0 36 CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : GTCGGGTTAGCATTTCAAATTCCCGTGATTCAACTGTTGCTAGGTGCTTTAGGAATTATTTCTTCTCAAAAAATGCTTTCTGGTTGGCGTTATGTAATTATTGGATCGGTGGTTTTAGGAGCTATTCTCACACCTTCTACAGATCCCTTTACCCAAAGTCTTTTAGCCGGTGCTGTCTTGGGACTTTATTTCGGTGGTATCGGTTTGGTTAAGCTTGTTGGGAAATAATAAATATCATGACAGACTGATCGCACATACTGTAGAGACGTTCCGGTGGAACGTCTCTACGAATGTAAAGAAATGTAAATTTGCGGGGGGTAGGCGATCGCTGAAATGCTTATTCTATCGTTACCCCCCGCGAATCGCTTTCTGGATAAGGGTTTGAGATATTTTTTCGGTGGCTTTTTCTCAATAAACTAGGGTTGTTGACAGGTCATCTTGACCCCCCGCGAATTTGGCTATATATAATTAGGACAGGGTAAGGCTTTCAGAAGCCAAGC # Right flank : CTGCTTCGTCTTGTTTCCAGTCTTTTTCAGTCCACTCCTTTAAATTATTTTATTAAAGAAAAAGTATTTAATGAAGCTATCAATTTAGGAAAGATAGTTTAGTTTATCTGATTCATATTCGAGATTGGATTAATAGAATTAAACAATATAGCATTTCCCAATAAGAGTGAAGTACACCCTTAAAACCTCACCCCCAACCCCTCTCCTTAGTAAGGAGAGGGGAGATAAAGCGCAGCTTTATCGGGGTGAGGTTAAGTTGTACCTCACTCAATCGATAACCGCTATAAGTGTAGACCTCAATATAGTTTGGAATGTAATTGAGAACTATTTGCCAGATTTAGAAAAAACGATTGAAGCAATGGCAGGAGAATTTTGGAATTTTAGGTAATTAGCCTCAAAATCTCTGTATTAAAATTTCTGGAATTTAAAATTTTGAATTGTTATTTAAATGATAAACTAATCAATTAACCATTCCGAAGCGCGTTCACCCAGTTCTAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 114114-113431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTA010000006.1 Scytonema hofmannii FACHB-248 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 114113 35 100.0 35 ................................... TTTCCACTGGTCCAACAGGCAAGCTGTCTTTCCAA 114043 35 100.0 35 ................................... TTTCTGATTCAGCACTTGTTTTTGCATTAGCTATT 113973 35 100.0 37 ................................... TCGTTAAACGGATAATATCCTGATTTTTCATCAAGAC 113901 35 100.0 38 ................................... AATACTCTGGCACGCCGACGCGTTTGCCGTTGTAGTTT 113828 35 100.0 36 ................................... TGAGAACCACCGCCATTTTTGCCTGTTCCGTCATAG 113757 35 100.0 34 ................................... TAAATCCTCTATTCGTAGGGGTTGCATACTCTAA 113688 35 100.0 40 ................................... CAGTAGGATTCTGTCGTAAATCTTCCTTCAATGTATTAAT 113613 35 100.0 35 ................................... CATCGTAATGATTGTCATAGCATTCTACTATTTTT 113543 35 100.0 43 ................................... TACCATTCACAAAACACTGGACACCTTGCGCGGAAAGTGCATC 113465 35 88.6 0 ............................CAA...A | ========== ====== ====== ====== =================================== =========================================== ================== 10 35 98.9 37 GTTTTCAACCAATTACCCCTCACGGGGATGGAAAC # Left flank : TGAAATAGCCACAAAATGGGCGACAATATTAGCACGGCGAGAAATGGGAGAATCGTTGCAAGTGGTAGCGCAAGATTTGGGAATGCCTTATGAAACAGTGAAAACTTATGTTAAATTAGCGCGACGGGCGCTCAAAAATCAGGAGTAGTTTGCTATACTCATCGAATGTGTAGCGGAACCTCGAAAAGTTAATATTGCGTTTCCGAATAAAGGTGAAAGTGTTTGTTTTTACTTTTTACATGCAAGTTTTTAGTGGGGAGTAGAGCGATCTTATATTTACTTTATATTTCCGCTCGCTTAATAATCACCTGAGGGGGAAGGGTAACACCTGAAACCCTTATTCTTTCGTTGACCCCCTCAGATAACTTGCTGTGTAAATGTTAAAAGCTTGTCAGGTTAAAGGTAATTGATAAATAGTCTCAATTATTTGCTTATGACAAACACCCCCTCAGATTTACATCCCTCAAACCTTGTTATTTCAAGGTTTCTAGTCAGGTAGG # Right flank : GACGCCTTTCAAGGATATTATGATCGTCAAACACTATAAACTAACTTATGGATTGGCTACCCTCAATTGACTTATCTCACCTTTGGGATTTGGTTATTGCCCAAACTCCAACACCTACCCGTACATCTTCACCGTTACCAAATACGGCAAAAATTTCTAATGATATCGAACTATTAAAAAGTCAAATAGAGCTTCTTAAAACTACAAATGCCAGCCAACTAGAATTTCTCAAAAGTACAAACATCCAACTAAATGAAAACTTTAATAGATTTGTTGCAGCGATGCAATTTGTCTTAGTTGTATTTGCCTTTTTGGGTGGACTTTTAGCTTATGTTGTAGGTAAAAATTTAGATGATGCGAAGAAAGTAGCCAGTCAATTAATTAACCGAGAAGTAGAGAATAAAATTACAGATTTAGTTCAATCCGAAGTTGAGAGTGTCAAGCGTTCTTTGCAGCGTGAAAGGGTAATTGGTTCAACAATTGTAGATTATTATTTACCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCAACCAATTACCCCTCACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 116651-116035 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTA010000006.1 Scytonema hofmannii FACHB-248 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 116650 35 100.0 42 ................................... GATTATTCCAATCGTGCAGCACGTGAACACCACCAACTGAAA 116573 35 100.0 39 ................................... AACTGGCTATTGCTGGTTTGATGGCGTTGAATGGCGTTG 116499 35 100.0 36 ................................... GGGTGGCATTCTCCCCAATTGCCTGTGCCGTACTGT 116428 35 100.0 38 ................................... TGGTAAGATTTGGCGAGCAGAATGGACATTTCAAGAAA 116355 35 100.0 36 ................................... TGATGAGGACACAAAACGCCTCGTTATAAGAATGGT 116284 35 100.0 39 ................................... TTTCAGCTTCATCTGTATTTGCAAATGAGTGTGGAAATT 116210 35 100.0 37 ................................... AACTGGAGACATAGTTGAGAAAGGACACGTCAACGGG 116138 35 100.0 34 ................................... TTATTGCCATGTTCACCACTGTAAACATGGCTAA 116069 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 9 35 100.0 38 GTTTCCATCCCCGTGAGGGGTAAGAGATTTAAAAC # Left flank : AAGAGGTTCTACACTGGTTACACCTCAATAATTTAGAGAATTCACTTAGTTAAATCACAACTAAGTCAATTTGTCAATATCACCTCGACCTGTTTTGAATAATATTCCTCAACTAAGGTGATAGTAGTCAATTTAAAAGCTGATTTTTCAGGTATTTATCAGCATTTGTGAGGTGGTAATTATGACCTATTTTAAGCAACTGCATCCGTGGTGCATTATTCGTGTTTTACCTAATAAACAACAGTTGGATAATTCTGGTGTGCCGTTACACCCCAGAAGCATTTATACAGAGTGCCAAGAGTCTAAAGTTGTTGCACGATTTCGTCGCCGAGATGATGCAGTTGCTTACTTGCAAGTGTTGCAACATTCAATCAAAAATACAAGTTTTCTGATTATTTTTGATGTGCAAGGAGTGCGAAAATTACCTGATAGTAAAAAGTAAAAAGATAATCTCCATAAATAAATAGAAGTTTTAAAAATTTAGCGCAATAAATATACTG # Right flank : CCCACTCTTACAGAAAGCTTACCAAATAAGGATTACAGAACTGTAAAACTGAGGGGGGTCTATTTTACCTGTCAACAGACCATAATTATTGACAATAACTACAGTCTTCAAGACCCCAAACCCTTATACAGTAAGTCATCTGAGGGGGTCTACGAAACAATAAGCCTTTCGGACTTTGGACGACCCCCTCAGTTTACATTTCTTAACAAAATGGCTTTAGGAAACTAACCATTAAGTTACACATTAAAGAAAATGTAGTTATTAAATTGTCAAGGTGCATGTGTTGGTATAAACAGTACCATAGCAACCGACAAAATGCAATCTCTCTATTAAGGTTTCCAAATCGACTCTTATAGAGACGCGATAAATCGTCGTCTCTACATCTGACTTATTAAATCCCCATAAGGGGATGAAAACTTGATAAGATGCAGAAAATATAGCTTAAATGCTACCATGCCTCGACACTCTCAAAAAAAGCTAACTACATCATCTTCTGAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAGAGATTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 3 120455-120636 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTA010000006.1 Scytonema hofmannii FACHB-248 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 120455 35 100.0 39 ................................... TTATGTAGTCCAAGCTTCTCTGGAGCGTGGAAACATTAA 120529 35 100.0 38 ................................... ATCTGCTATTGGTTTCTTCTTTTAATGTTTCCAAAATT 120602 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 3 35 100.0 39 GTTTCCATCCCCGTGAGGGGAAGAGGAATTAAAAC # Left flank : AGTGGTAGCAGTGCTGGATTATTGAGAAACAAGGTAGAATTTTCTTCCCACAAGCGTACAACTCGGTAACGGTGAGTTGTTATTTCATCAATATACTCTTGAGTGAAAGCAATTTCGTCACGTGTTTCCTGCAAAAATATAACAACCTGTGTAATTGGAAACTTATACTTACGTCTCAATCTCACGGAGTAATCCAGCATTCTAAAGGGTAGCGGGGGTTTCGAGATAGTACGGGTCTGGAATTCGATGTGTAAAATTCTCTCTTGAGTTTGCACAAAGGTAACGGAATCTGCGCGGATTGGTTCTAAAGAAAGTTCCGTTTTAAGTATTTTAGCTTCTGTGGTTTGAGATGTTAATAACCAACGAGCAAATTCGAGTGGATATTCTTCTGCTAACAGCTTACAAATGTTGTCCGTGTTCAATTTTTACACCCTGAAATGAGGCTATTTTTGTGACGAGTGTAAATACTTTATCATCATTGGCAAATGCGATCGCCACCC # Right flank : CCCTTAGTAAAATCAAAGAACTGGTAATCGCGCGCGAGTAGCAATGGAACAGGAATGTACGCTAAGGCTACAAGCTTTGTCTACACAAGTTTCTAGCTATAGGATTCGCCAAAGTCCTTTGGATCGCGCAGAGGACGAAGTTCACCCCGCTTCAAATGTTCAGCTAAAGCAAACTGATAACGTCCTAACATATTGATATGCTTGTATCCCAAAGGAGAGAGCCGCGCCAAATCCTCAGATTTTACTTCCACCCCCTGGTCTTGCAGTTGCTTTACCGCTACATCTATGTAGTTCGTATTCCATAGTACCAGTGCATTCACTACCAGTCCCAGAGCGCCCAGTTGGTCTTCTTGACCTTCACGATAGCGTTGACGCACTTCACCCCGTTGTCCGTGGAAAGTTACCCTGGCTAAACTATGGCGACCTTCTCCTCGGTTAAGTTGGGTAAGGACGCGACGGCGATAGGTTTCGTCATCAATATAAGGTAGCAAATATAACGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGAAGAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 123937-124265 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTA010000006.1 Scytonema hofmannii FACHB-248 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 123937 35 100.0 36 ................................... CGACAACTATACGGATGCCCAAGATGCTTGGTGCTA 124008 35 100.0 38 ................................... GTATTTGCAAATGAGTGTGGAAATTTCACGCAAAATGC 124081 35 100.0 44 ................................... CTTTCAGCCTTGACCAAATTATTGAGCAACAAGGACTGCGAATT 124160 35 100.0 36 ................................... CTTTTTCACCTTGGTCTCATTGAAGAATGGAATCAA 124231 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 5 35 100.0 39 GTTTCCATCCCCGTGAGGGGAAGAGGAATTAAAAC # Left flank : CTGGATATAAATATGGACCTCTGTTCCGAGCCTTTAAGAATTTTAGGGGTGGTTCTCTACGTTACCAATCAGTTCAACAGAAGTGGTCTAGTTATTGTAAAAAAGCTGGTATAACCTGTAGTATTCATGACCTAAGACACGCACACGCAACTGAACTTATCAACAATGGGGTAAGCCTAAATACTATCCGCAAGCGTCTTGGTCACAAAAACTTGCAAACTACTATTTATATCAAAATCGGTGGCGTTTTCAGCCTCGGCGCAAGCGTCTTGGTCACAAAAACTTGCAAACTACCCTCCGTTACGCAGAACAGTCAGATGCTACTGCTGACGCAGAACTGCGGGCTTGGCGACGACACCATGAACAAGGTTATCAGTAGCGATCGCAGTAGCGCGTGATTGCTCCCGATTGCCGTTGTCTAGAGTCTAGTGATAGTAAGCTTTTCGGGCTTAACGTACATTCCTGTTCCATTGCTACTCGCGCGCGGTAATTTGTGCAAA # Right flank : CCCTACCTTTCTGAAAGCTTTACCACAAGAGTGTTTTAAGGGTGCAAATCTGAGGGGGGTGTATTTTACCTGTCAATAATCTACAACTATTGACATAAAGCAACATACTGAGCCACTTCAAATCCTTACAAGGTAAACGTTCTGAGGGGGTCAACGTAATAATAAGGGTTTCAGCGATTGGGCTACCCCCTCAGATCAACTTTCTTCACAAAAGAATTTTGGAAAAATTACGCCTTATATGAATCTTGACGATCAACAGGCTTAATTTGGAACTGCATATTTATGAAATTGTCAAGGTACAGCAGCGATGTACAAAATATACCACATAAATTTCACAAAGCGCAATCCTTAAGTTTCTGTTTGCGTATCAAATTCAAAATTATCTTTCTTTTGCCTTTTGACTTTTGCCTTTTAACTTTTAACTTTTTACTTCCTTCCATAGCTAAAGTTTCCAAATCATTGGTCTATATAACTCCACCTCTCCCATCAAACAAGCGACA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGAAGAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 5 129840-128729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTA010000006.1 Scytonema hofmannii FACHB-248 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 129839 35 82.9 36 T...G.G.AAG........................ GAGAACTAACAAGTAGATAGCTAACTGTTGCGAATA 129768 35 100.0 36 ................................... CAGTTGTCGGTTCTACTAACCAGACACAACAAACAG 129697 35 100.0 38 ................................... CTAAGGGATATAGGTGGGAAAACCCCATATCGCACATG 129624 35 100.0 39 ................................... TCCTAATCTTACAAAAGGTGGACTACGAGAAGCAGCTAT 129550 35 100.0 33 ................................... TTTTTTTTTTATGGCTCTTAAAAGATTTATAAT 129482 35 100.0 40 ................................... ACTACGATATCAGTATCAAGGCAATGCGCTCTTCTAAGCG 129407 35 100.0 38 ................................... TCAGTAGTATCTTTCATATTTGCACCATTATGTGCATC 129334 35 100.0 36 ................................... ACAAGTTCCAAGAACAGCCTCCGCACAGGGACTCAA 129263 35 100.0 36 ................................... TAATAACTAGAGACAGATTTCCTACACAAGTAACTT 129192 35 100.0 40 ................................... CTCTGAAAGTTACCGTATCCGCTGCGTTTATTGCTCAAGT 129117 35 100.0 37 ................................... TCAGCGGAATTGTGCAGCCACACCCTGGCGATGTAGC 129045 35 100.0 36 ................................... GAGAATACCAAATCACGGGATTTGGCACAACTGAAG 128974 35 100.0 37 ................................... CAATTTGCTGAGAGAATTGTGCGAATTGACTCTGGAG 128902 35 100.0 33 ................................... CTGCACCTTCTGCTTTCAGCCTACACCGCAAAA 128834 35 100.0 36 ................................... CTATCGGTGTCCCAACTGAATTCAGGGTACAAGAAT 128763 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 16 35 98.9 37 GTTTCCATCCCCGTGAGGGGAAGAGAAATTGAAAC # Left flank : TAGCGTCCTTGCTCTCGATAAACTTCTGCAATATTTTCGAGATTAGTTGCAATCTCTGAATGCTCTTTACCCAGATAATGTTTCCAAATATTCAAAGCTGCGAAAAAGTTACTTTCCGCTTCTAAGTAACGTCCTTGTGAGACATAAAATGCTGCAAGATTGTTTAAACTTTGTGCAACATCGGGATGTGAGCCAAACAAGCGTTTTCTCATATTTAAGACTTCGATATACAAGGGTTTTGCTAACAAAAAACGTCCTTGCATTCGATATAATTCTGCTAAGTTATTTAAGCTATCTGCTAGAGCAGAGTGTTCTTGAATATTTTCTCGTCCTAGCTTTATCGCTTGTTGTGTAACGATTACAGCTTGCTCAAAATTCCCTTGCTCAACAAGTTGCACTACTTCTCGGTTGAGTTGATTTAATTTTTCTATTATTTCTTTCATCTGCTGATTTGAGATGCTTATATATTTTTTGGTTCTTAGTTGTTATTTTATGCAAAA # Right flank : CCTACCCTTTTGAAACCCTTTTCAGAAGAGACTTTTAGACGCCTAAATCTGAGGGGGTAATCTAGATAGGCAAATAGTTGATAATAAGTCTCAATAAAACTTAGAACAACCACCCTCAAACACTTGTGGAACAAATCATCTGAGGGGGTCAACGAAAGAATAAGGGTTACAGCCATCGGGATACCCCCTCAGAAAATTTAAGTATCCAAGGGAAGAATGAGTACTTTTACTCTCAATTAAAAACTTGAGATTCAATTTTCAAGGTTCTGTAATTATAAACAGTAGTATAACAAAGTACTTGAAATTTGGAAAGCCTGAAATATTAACTTTTCACCAAACAAGGCAAAAGGTAAAAGAAAAAATGGTTTGAGAGCAACTAAATTTACTTATGGAAAGAAATAAAAAGATTTGTTTCTAGACAAGCAGTCCACTCGTACAAGGTGTCCTTATTAAATCCCCGCTCCTGCAATTTATCGGGATTATCTTTTGACTTTTGACTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGAAGAGAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA //