Array 1 2958-2716 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWYR01000027.1 Neisseria meningitidis strain INS-Nm1174 NODE_27_length_30278_cov_50.5566, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================================== ================== 2957 26 100.0 50 .......................... CGGCTTGTACGGTTTCGGTTTTTTTTTTGAGGTTTCGGGCAACTTCTAAA 2881 26 100.0 42 .......................... CAGACCTTGGGATAACGGCAATATTCAAAGGTTATAAAAGAC 2813 26 100.0 46 .......................... TAGAACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATG 2741 26 96.2 0 ..............T........... | ========== ====== ====== ====== ========================== ================================================== ================== 4 26 99.0 46 CCGTCATTCCCGCGCAGGCGGGAATC # Left flank : GTCATTCCCGCGCAGGCGGGAATCTAGGTTTGTCGGTGCGGAAACTTATCGGGTAAAACGGTTTCTTTAGATTTTGCGTTCTAGATTCCCACTTTCGCGGGAATGACGAAGAGTTGCGGGAATGATGGAAAGCTATGGGAATAACGAAGGGTTAAAGTAATCACGGGATGGTGTTCGCGGGAATATAAATTTAAATAATTCAAAAGGGTGTTATATGCAGCCTGCGGTTTATATTTTAGCAAGCCAACGTAATGGCACGTTATACATTGGCGTTACATCTGATTTGGTGCAACGTATTTACCAACATAGGGAACATTTGATTGAGGGATTTACATCACGGTACAACGTTACTATGCTGGTTTGGTATGAACTGCATCCTACGATGGAGAGCGCAATTACTCGGGAAAAACAGTTGAAGAAATGGAACAGGGCTTGGAAATTGCAACTGATTGAAGAAAATAATGTTTCTTGGCAGGATTTATGGTTTGATATTATTTAGC # Right flank : TAGACTGTCGGGCATCTGCAGCGGTTTGCTAAAAAACGCTTTACCGTGATCAGTGTGCAAAGTTAAAATGGGGAGGTAAGCTTTTCAATCAGCAATTCGGCGGGCGCGGAATCGGGCGGTTTACCGAACCCCGGCGTTCGCGGCGCGCCGCCCCGTCCCGTGAAGGCAAACTCAAGGAATAAAAGATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGGCGGGGGGGGGGAGGCGCAAGCGCAAACGTATCCATACGCTCTTGTAATGAACGGACAACAGCTGCCTGAGGTAAAGTGGGGGAATTCATATAATCAATTGACGCACAAAAACAATACCCGCCAAGCTACCTTTCATTCATATTTTCAGGGAACTAGAAAAAAAACTACTTTCTCATTCAATAATACCGATGAAGTTGTTGCTCAAAAAAACGGTGTTACCGTTTTCGGCGCGGCG # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCATTCCCGCGCAGGCGGGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 21846-20028 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWYR01000038.1 Neisseria meningitidis strain INS-Nm1174 NODE_38_length_22348_cov_55.1157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21845 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 21779 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 21713 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 21647 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 21581 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 21515 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 21449 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 21383 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 21317 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 21251 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 21185 36 97.2 30 ............A....................... ATAGAACCTATGGCTGCTACGGCGTTGACA 21119 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA 21053 36 100.0 30 .................................... AAGCATTGACGATATTTGTGTGGCGTTGCA 20987 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA 20921 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 20855 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 20789 36 100.0 30 .................................... CATCAAATCATCCGCCGCGATTCGATCGCA 20723 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 20657 36 100.0 30 .................................... GCCTGATGCCGTGTCGTGCGACACCTGAGA 20591 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 20525 36 100.0 30 .................................... GCCTGATGCCGTGTCGTGCGACACCTGAGA 20459 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 20393 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC 20327 36 100.0 30 .................................... AGTCAATGAATCACTAAAAGCCAAGTCAGA 20261 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTCCTTTACA 20195 36 100.0 30 .................................... TTTTTCGATTTTTTATATTGAGCGTTTTTG 20129 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 20063 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCTCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //