Array 1 18751-16930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAACU010000009.1 Streptococcus dysgalactiae strain iSDSE324 NODE_9_length_79177_cov_56.762, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 18750 32 96.9 33 ......T......................... ATTTATAATCAGTACGTCGTGCTCGTCATCTGA 18685 32 93.8 34 ......T.T....................... ATTTTCGCACAGATATAGATGCGCCTTCCTCGGC 18619 32 96.9 34 ......T......................... TTGTACTAGATTTGCCTCACGCTCTCCTCGCCAA 18553 32 96.9 33 ......T......................... CACAACAAGCATCTAAAATCTTGATGTCTGTCA 18488 32 96.9 35 ......T......................... AAACATTTTTCTCCTTTTTAATTCAACTTGATAGC 18421 32 96.9 34 ......T......................... ATGGAACTCTATCAAAGTATAATAGACCTCTTTG 18355 32 100.0 33 ................................ ATGATTAAAAATTCCTAACAATATTATATCATG 18290 32 100.0 36 ................................ TATTCATCTCGATTGCTGCACGAATTGTTGAGCCGC 18222 32 100.0 35 ................................ AAGGAAATAACCGAGATTCTCTGTATAGTGCTTGT 18155 32 100.0 38 ................................ TCGTCTAATGTTAGCTCATTCCAGCGACCGCTCTCAAT 18085 32 100.0 33 ................................ TTTTGCCTGATTAGAATACTGTGTCAGCTTATC 18020 32 100.0 35 ................................ CTCCAGAACGCTTCTCGCTCCACCCTTTGCTGTTT 17953 32 100.0 33 ................................ AACTTAGCTTTAAAAAAAGCTAATGAAAGATTG 17888 32 100.0 34 ................................ TTTTGTTAACTCATTGTATATATGTGAAACAAAT 17822 32 100.0 35 ................................ ATCACCAGTGAGCACTTTATAAATAGGGTCGATAA 17755 32 100.0 35 ................................ ACTAAAGAAACGATTTCACCTAGCAAAGAGTTGCC 17688 32 100.0 33 ................................ TTGAAATTAGATAAACCATCGTATGAAGAAGTT 17623 32 100.0 33 ................................ TTTGGTGGCTATATATAATTCTAATGATGCCCC 17558 32 100.0 34 ................................ AAATAGCGGGAACTTGCTTGAAAAATGCACGCCC 17492 32 100.0 34 ................................ ACTCAATTTATTTGTCTTAGCTTCGGCATCTGCT 17426 32 100.0 34 ................................ AAGAGCTTATAAAGCAGCTCGAAAAATCCTTGAA 17360 32 100.0 33 ................................ TAAAGATGCCTTAAAAAATCACGTTGATAGTGA 17295 32 100.0 35 ................................ TTTTTATCATAATGCCAACGTACAAAAGCAAGCGG 17228 32 100.0 36 ................................ CTTACGTCTCAACAACTCTCTTCACATTTGCGACTT 17160 32 100.0 35 ................................ GATAAACGAGAATACTTTTATGATTTCGTCTGTGT 17093 32 100.0 34 ................................ GTCGTATGTTAGCATAAGTACCTCCTTATCTTAT 17027 32 100.0 34 ................................ GTTCTGATTTTGGCATGTCCGTCAAGGATGTCAT 16961 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ====================================== ================== 28 32 98.9 34 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATTATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGAATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGATGCGTTTGGCTGGCAATGGCGAGGTTGTGGCGGTATCCAGTCGGTCACTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACATCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAGGCTCAGAAGGCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18019-18450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAACU010000015.1 Streptococcus dysgalactiae strain iSDSE324 NODE_15_length_55102_cov_51.4584, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18019 36 100.0 30 .................................... AAAAGGAAAAGGTAAACGCTAGATAGTGAG 18085 36 100.0 30 .................................... ACTATGTCAATCAAGGCTATCTTGATGGAT 18151 36 100.0 30 .................................... TAGAGTATGGTCGAAATATCGTCAGCGTAG 18217 36 100.0 30 .................................... TTCGGCAAGATTCCAAAGTTATCTAACTGT 18283 36 100.0 30 .................................... AGGTTTATTGATGTATGGGTTGTTTTTGTT 18349 36 100.0 30 .................................... ACTATGGACCAGAACCAGACTTACCATTTT 18415 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.2 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCTGAAGTGAAATCGATGATTGAAAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGTGGAGCTTTTCTAACAAAAGATGAAGTGGCTAATTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CAATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //