Array 1 289455-291584 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906448.1 Pasteurella dagmatis strain NCTC11617 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 289455 28 100.0 32 ............................ GTTCGCTCCATCAAAACTTTTATAGAGTTCAA 289515 28 100.0 32 ............................ GCGAATCGCGTCCATTTTGCTAGAATTGAAGC 289575 28 100.0 32 ............................ ATTTTGAATCTGATTTATAAAACAAGAGACAA 289635 28 100.0 32 ............................ GCTGGTGGAATTGCGCAAATGCTAACTAAACC 289695 28 100.0 32 ............................ TTTTTGTTTTAGAACAAACCTCACAAAACACT 289755 28 100.0 32 ............................ AAAATATTATATTTGCTCAAGCACAATAAAGT 289815 28 100.0 32 ............................ ACGATACCACCGACGCCCGCGCCGATTTTTAT 289875 28 100.0 32 ............................ ATAATAGCACCTCATAATAGATTAGATTAATA 289935 28 100.0 32 ............................ AGCGATCTTGGGCTTATTGGGAAAGTGGAGAG 289995 28 100.0 32 ............................ GGTGATGTTGCGCAATGGTTGTAAAGCGTTCG 290055 28 100.0 32 ............................ TGCGTGAGACAGTTCTCTTAAGTGTTGAATGA 290115 28 100.0 32 ............................ ATATAATAATTAAAGGTCAACACTTTTTTATT 290175 28 100.0 32 ............................ AAATGATTTAAACGAAATCTTCAGGGGGTAAA 290235 28 100.0 32 ............................ TGAAGATAAACAGCTTGAAGTTAAGCGTAGTT 290295 28 100.0 32 ............................ GCAGCGATGAAGCTGCTTGTCAAATAGTCAAA 290355 28 100.0 32 ............................ TCAGGTGGAATCATGCCGTCTGACATATCACC 290415 28 100.0 32 ............................ ACAATCTCAAAGTTGCTTTTTGTTCACCTTGA 290475 28 100.0 33 ............................ TTGCTGCTGTGGGCTACCCGCGGCGCTGATTGT 290536 28 100.0 32 ............................ GTTTTGGATGGACAAAGGGGAATTAAATAAAA 290596 28 100.0 32 ............................ TTTTTAGTTTGTAGAACTTAAGGGCTTATCCC 290656 28 100.0 32 ............................ TTGCACCGCGCCGATCAGCTTATTGAACTGTT 290716 28 100.0 32 ............................ TCAAAATTTTAATTTCGCGGTTGTAAAAATTG 290776 28 100.0 32 ............................ GTCCAGCGCGACTAATGTGTAAAAAAACGGAT 290836 28 100.0 33 ............................ AACTTTAACAATTAACACTAGCGGATTCAATAA 290897 28 100.0 32 ............................ TTGTTCTGATTGTGGTTGTGCTTGTGGTGCTT 290957 28 100.0 32 ............................ TTTAACGTTTGATAACTCTTGAATAGACCCTT 291017 28 100.0 32 ............................ GTGAGCAGTTAAATGCGGGGTGATAAATGACT 291077 28 96.4 32 ...............T............ GTTTTTACGAGGGATCTCTGTGTAAACCTCAC 291137 28 100.0 32 ............................ TTTCTCATCTTTGACCCCCGTATAATAACTTA 291197 28 100.0 32 ............................ TACGCCATTTTGTTGAGCATCGGGCGATATAC 291257 28 100.0 32 ............................ ATATACGCATCGCAAATTTTCCAAACCCACAC 291317 28 100.0 32 ............................ AGCTTGCCGCGTTGGAACGCGTTAACATACGG 291377 28 100.0 32 ............................ CAATCCGGATATATCAGTCTTGTGTATGTATC 291437 28 100.0 32 ............................ CACGAAAGAAGCTACTGCTAGACTTGGTTTGG 291497 28 100.0 32 ............................ CATAAAACTCAATTGTACCGTTTGCATTATCA 291557 27 85.7 0 ....................-.C..G.G | G [291579] ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGTTATATCAGCAATTATTGCAAAGTGGACTAGAGGATTATGCTTTGATTAGTCAGGTCAAAGTAACTCCAACTAGCACTGAGCATCGTTGTTATAGTCGTGTTCATCGTAAAGGACAAAGTTGCATCCGACGCACAGAAGCATTTCTCAAAAGCATTAATAAATGGAATGAGGGTATTCGAGAGGAAATGCAGAATCGTCATCAAAGTACAGCCTTTTTTCCTCATATTCACTTAAAAAGTGCAAGCACAAGCCAACGTTTTATCTTAGCAGTGAAAGAACGAAAAATGTTAAAAGCTTGCGAGGGCCAGTTTGGTAGTTATGGTTTAAGTAAAATAGCAACAGTACCTCATTTCTAAATGAGTTTATAACCCTTTTTTCTTATTGAAATTTTTATCAAATAAGATCAAAGGGTTATAAATATTCTTGTAAAAAGGGTGATAAACCAAAATGTTCTTTAACAATTTGAAGAATAAACTTATTTTCGTTACACTAACATA # Right flank : GTTTAACTTGTTAGTAGTGTGGTTTAACAGTAGAAATTCATTTAAAAATTATTTAAACAGTGTTTGAATATTATTCATTACTTATCAAGGGGGAAATATGCTTAAAACACCTTATATTACGTCTTCTGATTTAAAAACTATTTTGCATTCTAAACGAGCGAATATTTATTATTTGGAGCATTGCCGAGTGTTACTAAATGGTGGGCGTGTTGAGTATGTGACAAATCAAGGTAAGGAGTCGTTATATTGGAATATTCCCATTGCCAATACAAGCTGCTTGCTTTTGAGTAGTGGAACATCAATCACTCAAGCGGCAATGCGTGAATTATCGAAAGCAGGCGTAATGGTTGGATTTTGCAGTGGTGGCGGTACGCCATTATTTAATGCAACGGAAACCGAGATAGGTTGTGAGTTTTTTAGTCCACAAAGTGAATATCGTCCGGTTGAATATTTACAACAATGGTGCAGATTTTGGTTTGATGATGAAAAGCGTTTGAATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2134750-2135078 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906448.1 Pasteurella dagmatis strain NCTC11617 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 2134750 29 100.0 31 ............................. TGCATTGCATAGAACACAATCGCCAAGTGGT 2134810 29 100.0 31 ............................. ACTGCGTTTCACGAAATCAAGGGCGGCAAAT 2134870 29 100.0 31 ............................. TTCTTGCCGTTGTCGAGATTGTGCCAGTACG 2134930 29 100.0 31 ............................. ATAAGCACTTGAATTTCTGCCAGCGGTTGAT 2134990 29 96.6 31 ............................A TTGGTATTCCCCTGTTCTCATCTCAAACCAG 2135050 29 89.7 0 ....................T...A...A | ========== ====== ====== ====== ============================= =============================== ================== 6 29 97.7 31 GTTCACCGCCGCATAGGCGGCTTAGAAAT # Left flank : ACCATATAGCGCAGACACTTATTTACACCGTATTGGGCGTACTGCGCGTGCAGGTAAAAAAGGCGTTGCGGTGTCTTTTGTCGAAGCACACGACTATAAATTACTCGGCAAAATTAAACGTTATACCGAAGAATTATTGAAAGCGCGCGTAATTGAAGGCTTAGAGCCACGCACTAAAGCCCCGAAAGATGGCGAAGTGAAGACGGTCACTAAAAAGCAAAAAGCACGTATTAAAGCGAAGCGTGATGAGAAGCAAAAACAAGAGCAGAAAAAGAAAACAAAACTGCGCCATAAAGACACTAAAAATATTGGAAAACGCCGTAAACCAAGTTCAGCAACGAACAGTGCAGAATAATTAACAACCTATCTTTAACCCTTTTTTCTTAAGAGATGATTTATCGAATAAGATGAAAGGGTTATTTTTATGCCAAAGAAAAGGTTTTTCACCGTCTAAGCAGCCCTTCCTTGATGAATAAATCCACATTGATTAGACTAGTCTA # Right flank : ACTCGCCGGTTTTCAAGACCGGCGGTGCCTTTATGTTTTAGATCGACCTCTTGAATGCCATTCATGCGCTCTTCTGGAAGGTAGATTATGGGGACTAATCGTTTTGGGGCTTGCCGATTATAAAAGTGCGGTGAGTTTTTGCAGAATTTCATTGGCTTGAATTTTGTCCATACTTTCAGCTACTAAATAATGTTGGTTTTTACCGTAAGCGCCGATTAATTTTGGATCAGTTGCACCATATAAGGTGATATTGGTTTTATCTAAAGCCGCGGTTAAATGCGCCAAACCTGTATCAACGGACACCACTGCTTTGGCATTGACAATCTGTTGTGCGAGTGCAGAGAGGTTCGATTTTGGCAGAATTTTTACCAACGCCAGATCTTGAGCGATCATTTCTGCACGCTGTCTTTCTGATGCATTGGACCAAGGTAAGCGAATTTCCAAACCAAGTGCGGTCAATTTTTCTGCTAATTTTCGCCATTGTTCGTCTGGCAAGAATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCATAGGCGGCTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //