Array 1 67694-68251 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBWU01000006.1 Actinomadura pelletieri DSM 43383 Ga0170373_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 67694 30 100.0 35 .............................. ACCAAGCCGGTCACGATCGTGCTGCATGAGATCCA 67759 30 100.0 35 .............................. CGGTTGCCTTCTCGCGCTCGCCGGAGGCCGCGGGC 67824 30 100.0 35 .............................. TCCCAGTCCCGCAGCGGGTCCACGCCCAGTGCGTC 67889 30 100.0 35 .............................. GTCCACGACGTGTCGCGCGGCTTGGCGCCGCGCGG 67954 30 96.7 36 .....................A........ CCGTGCAGCCCCCGCAGGGCGCCGGCGGCCAGACCG 68020 30 100.0 36 .............................. TCCAACGGCCCGGCCGGGTGCTCAACGATAGCCAGC 68086 30 100.0 36 .............................. GAGAGGGTGTCCATGCTGATCGACAAGCCGAGCGGC 68152 30 100.0 38 .............................. CCGGGGTCAGAGAGTCCGCAGCACATCTTGGCCATCTG 68220 30 93.3 0 ......................T...G... | TA [68244] ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.9 36 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : GGTGGATTCCCGTCGTCGTGTTGGTCGATGAGGTCGCCGAGTTGTTCCTGATGGCGGACAAGTCGGAGAAGGATGAGGTGGCCAGGACGGCTACGGCCCTGCTGCGGTTGGCGCAACTGGGGCGGGCGTTCGCGGTCTACCTCGTCGTCTGCGGGCAACGCATCGGCTCTGACCTGGGGCCCGGCGTCACCGCGCTTTCTCTACGTCTTCAAGGGCGCCCGCTCCGCGGCCGCCGGGGGGGCCGGGCGGGGACGACGGGCGTGCGGCCTCTCCGGGCCGGTCCCGCCGTCCCCGCCCGCCCCTACAGGCAGCGAACCCGACCCAAGAGAACACGAAAGCCCGCACCGCTCTGAGATGCTGGCGAGGTGCACGGCACCACCAAGATCAGTCTTGATCGTTTCAGCGACACACCGGGGTCTCACGCACGACCGGAGGTTCGCTGCAAATTCGCGCCCCGTTCGGCCGCCTATGCGGCAGCCAGCCAGCAGCTTTACCCTGGG # Right flank : CCAGGTCAGGAGCCATCAAAGGTGGCTCCAGCTAAAGGCCCCCTTCCGATCTTGGAAGGGGGCTGTTCGCTAAGCCGCTGTGCCTGGCCACGGTCAAGGCCGCCGCTCGTGCCGAGCGCACCGTCTGCACCGCTTGGCCGCAGGGAAGACCGCATGGCCCCCTCGCAGCGGTCTACGACGCGCTGCCTGCACCGCGCCGTCCGCATGATGTGATTACCGTTCCCGGTCGAGGGGACGACGCCGCCTCCAGGCGCCGGACGCCCCGACCAGGGCCAAAGACGATGCGTTGACGGCGCGTCGCTGTTGTTGCTTCAGGGTGGAGGGAGCCGGCCGGGCTAGGGCAACAGCGACTAGGGCCCGTGATCCTATGGACGGCGGGGAAGGTGTGGGGCACGGACACGGTCAGCCCGCGAGCTTAGTCCTCGGTCTGGAGGCCTTGGGCGGTGAGGCCCGGGTGCTGGTCGCTTACATGTTCGAGCTCGTCGAGGGCGTCTGCAAGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 114667-115101 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBWU01000001.1 Actinomadura pelletieri DSM 43383 Ga0170373_101, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 114667 30 100.0 39 .............................. CGCCGTCTCTTTTGACACGCCGTACGCCGTTCGGCAGCA 114736 30 100.0 38 .............................. CGGGAGACTCGTGGCCGTGGGTTGGACGGTGCGACGTT 114804 30 100.0 36 .............................. GGCGGCCGTCCGGCGGGTGGGCCGGGAGCCGCTGTA 114870 30 100.0 38 .............................. TCCACGGCCGCCGGATCCAAAGGGGCCGCGAAGGCGCT 114938 30 100.0 37 .............................. TACCGGTCTTCGGTCCGGCGGCGAGGATCGTCAAACC 115005 30 100.0 37 .............................. CCGCCACCATGGAACTGGAAGGGCTGATGCTGAAGGA 115072 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 100.0 38 GTTGCGATCCCTCGTAGGGGCGATGAGGAC # Left flank : TAGACGGTATTGGGGTAGACGATCTTGTTGGCGAGGGCGTACTCGGCCGGGAACCGGCACCGATAGTAGGCCTGATCGTTGTTCCAATTGCCCTCATCCGGCGTTGCAATACCCGCAGAGCAGACACCCCTCGGGGCGCGTGGGGGCGCCGGGTGCGGTGCGCCATGTGGACCGCAGCGCCGCGCCCACGTGAGGCCAGAATGGCCTGGGCACATTCGAATTCCTCGACCGACACCAGCGGTTCGTGGACTTATCGCTCGGACAGACCCACTGCTCACGGTCGTTCCAACGCAGCTTGGTGGTGTGGCCGAGCGCGACATCGTCGACGTGGAGCAGGACCTCGTCTTCGCGTTGTTTGTGCCGGACTTGCCAGCCGGTGTAGTGAACCCGCGCCGCCGACTTCGACCACGCCACCCGCACCCAGTGCTGGTTCCGTGACGGGTCGGCCGCTGACGGGGACGGAACGCCTTTTCGGTGAGTCCCTCGGCGATGTCGAACAG # Right flank : CCCCAAGGTAAAGGTGCTGGTCATGGGGGGTGGGGCGGGTGGGTTTTGGGGGTGGTTTTCAGCGGGCCTTCGGTAGTGCGGGTGAGGCCGGTGTGTCGCTGAAGTTCGAGGCTGTTGAGGTGTCAAGGAGCGAGGTTAGAAGGTAACAGTGGCGTTCGGTCTGGCGGGTTTGGGTGGTGTTCGTGCCACTGGTTGCTGGCGGCCCCTCAGAGGGACGATGAGTGTTGGGGGTCTCGGGTCTGTTTGACAGGAGAACCAGTCTGTTGCGACCCCGGGTGGGCTCAGGGAATGACTGTGCGTCATGGTAACGGCTCCTCTGGGACCTTTGTCGGGGTTGCCGATCAAGATCGAGACTAGTTTTCCTGTTTCTCGGACATGTCGGGAGTGGGGCGTTAGCGTGGGCGTCGTCACGCAGGAGTGGTTGGTGGTCACTGTTCCAGAGGGTGCCGACATTGCTGTCGAGTGGACGGGGAGGGGCATGTTACGGCTGCGGTTGGACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCCCTCGTAGGGGCGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 123701-123933 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBWU01000001.1 Actinomadura pelletieri DSM 43383 Ga0170373_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 123701 30 100.0 38 .............................. ACGAAACCGCTCCACGTGTAATCAGCCGGCTCCGACGC 123769 30 100.0 36 .............................. ACACGGTGGACTGTGCGCGGCCGATGCGGCGGGCGA 123835 30 100.0 39 .............................. AGCATGATGTTCAGCGGCCCGAAGTCGGTCTCCACCCTG 123904 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 4 30 100.0 38 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : CCCGGTGGCCTACGACGAGCTCCTCTACCTCGACGCCCTGGCCCTGACCCGCCACTGCCTAGAGAACACCACCTACAAGCCCTTCCGAATCTGGTGGTGACCCATGTACGTCGTGGTCGTCTACGACACCGCAGCCGAACGCAACCCCGTGATCCTGCGCACCTGCCGCCAATACCTCCACCACGTCCAACGCAGCGTCTTCGAAGGACAACTAACCCCAGCCCAACTACGCCGCTTCCAAAACGCCGTCCACACCGCCCTCGACCTCACCTACGACAGCGTCATCGTCTACACCTTCCCACCCGGCACCACCCCCCAACGCCACGCCTGGGGAGCCACCGAACCCGAGCCCACCGACATCCTCTAACCCGTTCCTTGACACCTCCACACCGCAAAACTTCAGCAACACACCGGCCTCACCCGCACTACCGAAGGTCCGCTGAAACCTTCCCCCAAAACCCACCAGCCCCACCACCCCTGACCAGCAGCTTTACCCTGGG # Right flank : CTACAGGGCACCGCTCGTGGTCTTCGCGCACCGTTCTCGTACATGCTTCTAACCGGCGCAGTCGGACACAGACCTTTTGCACATGTGGAAGTCGGGACCACTCTGGCTTCCACGAGTTGTTTCTGCGGGTAGTACATCATCCTTAGCCCGAGCTTCCTGTACAGATCCGCCTTGTCATCGGGATGCGCGTCCACAACCGCCCGAGCAAGTTCGCCGGTCCGGCATAGCAGCTCCACGAGCCCGTCACCACTGATCACCTGGGCCGCCAGGACGGCGCTCACCTCGCCTTCCAACCGGGCGCGTTCCTGCTCGGCTTCGTTGATCGCGACCTGGACGCGGTCGGCGCCCGCGTTGAGCGCGGCGCGGTACTGGTTGAGATGTACGTGATCCCCTGGCCGCTTCGACGCCGAAAACGGTGCGGCCGAGGGGGAACTTGTAGTCCTTGCTGTGGATGGCCATATACGGCCCAGATGGACGGAAAACCCCGACACTGTTCGCCC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 373849-373235 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBWU01000001.1 Actinomadura pelletieri DSM 43383 Ga0170373_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 373848 30 100.0 34 .............................. AGGTCGTTATTACCGGCTAGGTCCGCAGCCTCCT 373784 30 100.0 36 .............................. GGGAAGCGTCGAAGGGGCGGATCCGTTTCCGGTACC 373718 30 96.7 39 ......................G....... TCATATATTCCCTCGGGAAGCCACGTACTGAATGATTCG 373649 30 100.0 36 .............................. AATTTGCTGGCGAGGATCGTGGGAATGGTCGGAACC 373583 30 100.0 35 .............................. ATCAAGTTCTTCGGCCTGTGGAGCGCGGAGTTGGG 373518 30 100.0 38 .............................. AGGAGGATGTTGAGGGCGGCGGCGCCTTGTCGGGGCCC 373450 30 100.0 38 .............................. GCGGTGGGGTCCTGGCGGAGGGTGAGGACCTCACCGAG 373382 30 93.3 36 ......T.T..................... ACGCGGCGGTGCCGGGTGACCCAGCCGATCGCGTCG 373316 30 96.7 21 ............................C. CAGGCGACCGTTCGGCCGCTG Deletion [373266] 373265 30 90.0 0 ......................G.T.T... | A [373249] ========== ====== ====== ====== ============================== ======================================= ================== 10 30 97.7 35 GTCCTCATCGCCCCTACGAGGGATCGCAAC # Left flank : CGGCCAGGTGACCGTCCAGGTCGCCGACAACGGAACGGGCGGCGCCACCGTCCGCCCCGGCTCCGGCCTCGCCGGCCTCCACGACCGAGTGACGGCCGTAGACGGCACCCTGGATCTACACTCCGAACCCCACGAGGGAACCGTCCTAACCGCCGTAATCCCCTGCCCAGGCCGCTTCGCACAGCAACGGGACCACTGACCGCGTAACAGCGGACGGCTTCGGAGATCTGCCCTCATACCCCGCGCAGGAGACCGTTCTGACCGCTATGTTGCACACGAGATCCCCGACCCTCCTCACCCCTCCGCGGGCCGCAGCACCAGCGGTACGTACGAACACCCCCAAAGCCACCAATTGCCATCTCCTGAACTCGCTCCTTGACACCTCAACAGAGTCGAACTTCAGCGACACACCGGCCTCTTCCGCACTACCGGAGGTCCGCTGAAAACCACCCGCAAAACCTCCCAGCCCCACCGCCGATGACCAGCACCTTTACCTTGGC # Right flank : TTTCGAGCATATGTAGACGAATGAGGCGGTGTCTTGGCGTGGGTGGTCGCCGAGGACGGTCAACGTGGCGGTGAATTTGCGGCGTCCCTCGCCGTGCAGACGCCACAGCAGTCGGACGGTTGCCCGGGTACGGTCCCGCTCGACGCCGTGGCGGCGCGGTGGTTCGGGGGCGTCCTCGTCGCTGCGCCACCACTGGTAGGTGATCTCGCCGGGCGTGCCATCGGTGGTGAACGTGCCGGTGATGGTGACCTCGCCCCCACAGCGTGGACGCGGGTCGTCCACCTTGACGTCCACCGCGGTCACGACCGGGTCGGCCTGCTCGGCGGGCCGGTTCGCCCAGGCGAGCAGGGCGCCAGCCAGCGCGACCGGCAGCAGAACCGCCCATAGGACGCGGGCGCCGCGCCGTCGCCGCCGGGGCTTCGGCGGGACGTAAACGGTTGTCCCGTCGAAGGCGTCCGGAAGCTTTTTTGTGGTGTGCACATCGGTCGTGGTCCGCTCGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 52186-51550 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBWU01000008.1 Actinomadura pelletieri DSM 43383 Ga0170373_108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52185 29 100.0 32 ............................. GGTCCTCGTCTGCCTTCTGCGGATTTGAGATC 52124 29 100.0 32 ............................. GCCGGGAGTCAGCAGCTCCCGGCCTCTCACGC 52063 29 100.0 32 ............................. CCTAATCCCGGTGAGCTGATCATTACTCTCCG 52002 29 100.0 32 ............................. GTCCCGCTCTCACGGCTCGCCCTGTGCCGGTG 51941 28 96.6 32 .....................-....... GAGTTCACCGACAAGGCCGCCGCGCGGGCCGA 51881 29 100.0 32 ............................. TTCGACTACCGCACCCTCGAAGTGAACAAGAA 51820 29 96.6 30 ..........A.................. GAGCAGAGACCAGCGACGGCTCGATCAGGT 51761 29 100.0 32 ............................. TACAGGTTCGGCGGCGACCAGACGGTCACCTA 51700 29 100.0 32 ............................. ACGGCTCTTGGCAGGTCGTGGAGAGTGCGCAC 51639 29 100.0 32 ............................. AGCAGCGGCAACGGACGATCGAGCGGCACATC 51578 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGCTCCCCACGCCCGTGGGGGTGGTCCG # Left flank : AATCCGCTCCCTGGGAACATCCGGATACCCCACCAACTCGGGGAACGCATCATCCGCCAGAGCCTGGAAGGTAAAGGTGACCTTCCCGATGTCATGAAGCGCCGCCCAGAACATCAACACCCGCCGAGCACGCTCATCATCGACGCCGAGCCCCGCAGCGATGTGCCGTCGTCCGGCAGGACTGACATAGAGATCCCACAGCACACCCATCGCGGCAGCCGCGTCCAAAAGATGACACACCACCGGATAGGGACCCGGCAGACCACGACGCTTTCCCCACAGCGCCAGATCGACACCGGGGACCTCAAGCGGATTCCCCGTCATGACCTCATTCCCTCATAGCCCGTGACTCACGATAGACCGACCGTAGCGACGAGGACTGACAGTCCGGGACCACCAGCCGAGAGTAAGCTCCACCCATGCGGCGGCAGACGGCACAAGAGCCGAACAACCCGAAATATAAACTCCAAGCGCACTTGTGAACCCGCAGGTCACGAAGT # Right flank : ATGACTAGTTGCTCGAACCCGGCGCCGATCCCCAGCCGTCCGCCGGTTCCTGCCAGCTTTCCGTTTGGTCGTCCCAGACCAGCCGCGGAAGGGTGATGTTCTCTCGACGCAGGTTGACAGCCTCCTCCGGGCGTAGGCCGGCGTAGTAGAGCACGGCGAAGAATGCGGCAAGGCGCGGGCCGCTCGGCTGCTGTCCCCGTACGGCCTTCAGCAGGCGCCGGGCCTGACCGTGGTTAACGACCGAGCGCCGGTCGACCTCGGGCGAGGCTTTCGGGGCCTTCCACTTGATGGCCTTGACGGGATTGCCCGAGAGCGCGTTCAACTCGACCGCGTATTCACAGGCGTTGTGGAGAATCGCGCGGTTGCGTTGGACGGTCGAGGGAGCGGCGAGCGACCCGTCAAGCAGCGTCGCCGCCCGGTCGAGGACGGCGCGCATCACCTTGGGGTCGGCCAGCGCCGATACAGGCTTGGTGTTGCGGGCAAGCCACTTGAGGGTCTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCCCGTGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 61469-62957 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBWU01000008.1 Actinomadura pelletieri DSM 43383 Ga0170373_108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================== ================== 61469 29 100.0 32 ............................. CACACGAGTTGTTCGTGTCGGGGGAGCCCCTG 61530 29 100.0 32 ............................. CTCATGACAGCATCGCCCCCAACTTGCGGGCC 61591 29 96.6 32 ............................C CCGCTGAAGAGAACCCACCGCCGACCGGGCAA 61652 29 100.0 32 ............................. ACGCCGGAACCGTGCGTGATCTGCAACAAGCC 61713 29 100.0 32 ............................. TTGGCGATGGAGCTCGGCCTCACCGTCACCAA 61774 29 100.0 32 ............................. CCTGCGCAGGTACCGGTCGACGTCGGCGGGAG 61835 29 100.0 32 ............................. CGGCCAGAGGCCGCGTCCCAAGGTGGGCTTTG 61896 29 100.0 32 ............................. GTGTCTCGCCCTTCCTTGACCACGCGTCCGAG 61957 29 93.1 33 T...........................A GTCCCCGTCCTCACGCTCGTCCTGGCGCTCGTC 62019 29 100.0 32 ............................. ATCGCGCGTAGCCAGTCCGCCAATCCCTGAGT 62080 29 100.0 32 ............................. TTGTACCCGATGTCGTCCCATCCTCGGCCGTC 62141 29 100.0 32 ............................. GTGAGGCAGTGGCAGGCCGCCCTACGCACCCA 62202 29 100.0 32 ............................. CCGGGGCCCGCTCGCCGACGTGCGCGGCGCCC 62263 28 93.1 32 A...........-................ CCGCGGTCCGAGACCTACGCGGGGGTGTGAGC 62323 29 100.0 32 ............................. GACACTCTGACCGCCGAGGACGAGCAGCAGTT 62384 29 100.0 32 ............................. CCTACGGCGGGCTGATGCCGCTGGCCGGGACC 62445 29 100.0 32 ............................. GAGAAGCGGGAGCCGTACCCGACGAAGGCGAA 62506 29 96.6 32 .......A..................... CTCTGGCTCGACCCGGCAAGTGAGCAGCCCGA 62567 28 96.6 32 ................-............ GTCCGGGCCGAAGCGCCTCCCGAAGCGTGGGC 62627 29 100.0 32 ............................. GTTTCGATCATGAGCGGGATTGCGGCGGTGAA 62688 29 100.0 32 ............................. CGGACGGGAGCCCGGACGGTGGTCGAGGACGT 62749 29 96.6 32 ............T................ CCCAGCTCGCCGAGCAAGCCGAAGCCGCGGCC 62810 29 96.6 90 ..............T.............. GTAGACGACGCGGCTCGGTTTGGTTCGGGTCGCCTGCTTTCCACGCCCGGGTGAACCAGTGTCTCGCAGCGCCTGATCCACCTGCGCCGT 62929 29 79.3 0 .G......GG.A......A.......T.. | ========== ====== ====== ====== ============================= ========================================================================================== ================== 24 29 97.9 35 CTGCTCCCCACGCCCGTGGGGGTGAACCG # Left flank : CGCACGCTGGCCAGTTACCAGCGGGCATGAACTACGCGGACACCGTCACACCCGGAGACGACCCATGGGAACAATGATCGTCCTCTCCACGACGGCCGTGCCCGACTACGTCCGCGGCTCCCTCACCCGCTGGCTCACCGAACCGGCCCCCGGCCTCTACGTCGGCACAGTCTCCGCCCGCGTTCGCGACAAACTCTGGGAGGCCGTTAGCGAAGCGGTTGGTGAAGGCGCTGCCGTCCTCGTCCACCCAGCGACGACCGAACAAGGCTTCACCATCCGAACCGCCGGAGAACGCCGCCGCCGCATCGCCGACTTCGACGGTCTCCAACTCGTCCGGTTCCTCCCCCAAGACACCGAAGACCCGACAGCCCCAACAGAACCGACATAGCCACCCGGCCCCGCGAACCAACACACCAATGACCAGACTCCCCAGGAACCAGGCACCCCGAGGAGGCAGTCACGAACTCCAAGTGCCTTTGTGAAACCGCAGGTCGCGAAGC # Right flank : GTGGCCGCGGTTCCATCCCATGCAAGCGTTGCTGAGTCACCGTCGCGTGATGCGAAAGAGCCTTCAGTTGCGACGGAATGACTTCGTCATGGCGGGAATCCGGCCGCTAAACACACGACCACGGCTCAAATTCCGAGATCTCAACTTTACCGCGTAGGCCTGCGCCAAGGAAGGCGAAAACGACCTGGCAACACGACCCGGTCCCCGCCCGTCCAACGTGGCGCGGAAGTATTTCCGCGCCGTAGAGGTGGGCCAGTATGGCGGAGTGCCGGCAGTCAGGTGGGGGCGGCGCCGGGCCGGGTCTAGGACCGCGCTCACCCACGATCGCAGGGCCGACGCCAAGTCGCCAGTCTGTCTGCGGCGGACTCGTCCTATTTGATTACGTGTGTGTCTAGGTATTTCGCGCTGTTATCTGTCCGCACCGGTGCGCCGGGAGGCGTGGTTGCGGTGGGTCTGGCCTTGTTCGTAGAGGTCACGTGCTCGTGGGTTGTGTTGGTGGC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACGCCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 321614-321132 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBWU01000008.1 Actinomadura pelletieri DSM 43383 Ga0170373_108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 321613 37 91.9 40 ....T...............G......C......... ACCCGGCGGGCTGCGCGCGTTCGTCCGCGAGCTCCTCGGC T [321610] 321535 37 97.3 35 ....................G................ TTGTACTTCTCGACCTCGCCGAGCGGAATCACGTC 321463 37 97.3 37 ....................G................ CGGACCGCGACTCGTTGTCCTTGCCCGCCAGCGCGGG 321389 37 100.0 37 ..................................... GCGTGCGCGTGCGGGCTGAGGCTGTGTTGGTTGCAGC 321315 37 100.0 35 ..................................... CTGGAGGGCCTCGCGGTCGACCACGGCGTGAAGCT 321243 37 100.0 38 ..................................... CCCGTAACGACGGTCGCCCGGTCCCCCGGCGTCCACCC 321168 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 98.1 37 CCCGCAATGAGGACCGACCCCTCAGGGTCGGTGACAC # Left flank : CATCGACAAGGCTGTCCCTCAGGTAGGCATCGGCGTACCGGTGCGGGAACTCCAGCGAGGTAAGACGGACCGTCCCCCGACTCGTCGGCGCCTGCAACTCGAACAGCGGCAGCTCGATCTGACCCTTGTCCCGCGCCGCCAGCAGCGCCTCCTCAACCCGGTTCGCCTGAGACGGGACCTGATCCAGCACCACGGTCTCCCGCATCTCCCCGCCAACCCGGCGCCCCTCCATCAGGTACGGCCCCTCCGGGAACGTCGGCGGCATCACCTTGTCCTCACCCGCTGGCCGGTAGACACCGTGGATCGAGACCCCCGCATCGACCCGCTCACCATCGACCGCCACCAACAGCCGCTCAACGAATGCCGACTCCATGAGACCTCCCCGTGACAGTGAGTGCATCGCGTAACGCAGACGCTACGAGGAACCACCGACAGTCGCGGCGAAACGAACAAGAAACTTGGCCACTAACCGAAACCGGCCACGACTACCTCCGAAGGAA # Right flank : GTTCCGAAGCCGAAGCATGCCAGGCGCCACGATCTGCGGGTCAGGGGATTGGGAAGTGGGACGGGATTGTTAGTTGGCAGCGGTGGGTGGTGGGGTTGTGGGTGCAGCCGTGCGCGTGGTTTTCCGTAGGGGGTACACACAGCATGGGCGCGGGCCAATCACCAACGCGCCGAACGGCCAGGTGACGATCACCCGTATGCGCACCGTCGGCGATGCACCGCCACGCACCGTCACCTTGGGGTCCAGTACGGCGGGATGATCACAACCGCTTGCACAGGCCGACCACGACCTCGACCGGCGACGTCTACCGCGTACCGGTGTAGGCCAGCCGGCCAAGCGCACTTTCGTGACCACGATCCGGGCTCGTATGCAGAACACCATGCGTACGGGGCCCAACTGTTGGAAGCTGGATCGGATCGAGTTTCTGACAGCCTGAAGCCTTCTTAGTTCTTGGAATCCCGGGTCAATCCAGGCTCCAGAGTGATCAGAGGAAACTCAAC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCAATGAGGACCGACCCCTCAGGGTCGGTGACAC # Alternate repeat : CCCGCAATGAGGACCGACCCGTCAGGGTCGGTGACAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.50,-14.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 4 329489-328206 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBWU01000008.1 Actinomadura pelletieri DSM 43383 Ga0170373_108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 329488 37 81.1 35 .T......A.........C...A.AG.T......... ATGTCACAGCACTCTCCATGGGAGGAGGAAGAGAG 329416 37 97.3 35 .........................G........... GCGAGCGCGGAGGTGATCCCGGTCAGCCCGGTGAA 329344 37 100.0 37 ..................................... GGTGATGGCCGCGTGAGCATCCGCATCCCCCGGCCGC 329270 37 100.0 36 ..................................... GGGGGACCTGTCGATGCAGGCGGGCCGGGCGCTGGG 329197 37 100.0 41 ..................................... CACCACCGGTGATCAGCCCGCCGCTGCGCGTACCCCGTGTA 329119 37 100.0 36 ..................................... TCGCCGGGGTCGACCTTTCCGCCTGGTAGTTCCCAG 329046 37 97.3 35 .........................G........... GACAGCGAGGCCACACCTCTTTCCTACGCGCAAGA 328974 37 94.6 36 .........................G........G.. CAGGGCACGGGGCGCGTGCTCGGTCATCCTGGTCAG 328901 36 89.2 34 ...........-...T.........GA.......... ACGGACTGGTCGCACACTGGCTCAGCCGCGCAGA 328831 37 94.6 38 A........................G........... AGCCGCACGATGCCGCTGTTGAAGACGGTGTTGACCAC 328756 37 100.0 37 ..................................... GGCCGACGAGCAGGCCGGTGCCGTCGTGGGTGAAAGC 328682 37 97.3 38 ...C................................. GTCGCCATCGCGTACCAGCGGACCGGGCGGAGGACGAA 328607 37 100.0 37 ..................................... CGTTGGCGGCGGCGACTCCCCACGCCATGAGCACCTG 328533 37 100.0 37 ..................................... CTTCATGCGCCTGCGCCACGATCCGGGCCACCCACTC 328459 37 94.6 35 .........................G..........A TGCCATCGAGGTTCTGCTGTCAGGCCGGATGTTCG 328387 37 94.6 35 .........................G..........T CTCCTCCACCTGCGTCGGCGCAGGCAGCGGGCCGA 328315 37 94.6 36 .........................G..........C GTGGTCGTACCCGGCCGCGATACCGGCGCACTCTAT 328242 37 97.3 0 .........................G........... | ========== ====== ====== ====== ===================================== ========================================= ================== 18 37 96.2 36 CCCGCAATGAGGACCGGCTGACGAGAGCCGGTGTTGG # Left flank : GTTTCACCTTCGCAAACTTGATCATTCGCATGTTGCGCTTCGAGCACAACGATGAGCGATCGTAGACCTAGTCTGGCTCTCTGCCTACACCTCGCGGCGCGGCAAAGGTAAATCTTCCTACAACACTATTCAGACCATAGAGGACAATCTCTACAATTTCGGACTGCTATCGCCTACACAAGAGACAACAAGGTCCGCTAAAGCTAAATGCCATTTCAACTTGCCAGCCGGCCCATGAACGCCAATAGCGTGTGTGAGTACGCAACGCTACGATCGGCAGGCTAACTTCACCTGCCACGATAGGCACGGTGACGCCCCCGCAATAAGCACCGGCTGCTACAGGATACGAACGGTTTCACAAAGAACGGCTCACCCTACACCCGGACCTCAGCAAAGGTCGCTCGTCGCTTTGCATGAAGATGGCTGCCAGCCACAATTCGGACAACGAGGGCCGGTTTTGGCACGGAGTCCTCCCCGCAACGGAGATGGAGAAATCAGGA # Right flank : GCAACTGACCTGCGATGATGACCGTAAGTGACCGTCTTCATCGAAGTGACTGTCCGAATTGTGCCCCTGACAAACGCTATGCACTTCGGAACCTCCCGGGGTTTGTGTGGGCACTGGTGGTTCCGAAGTGGGATTTGAACCTCGCCGCTGCCACTCGAAGGCTTGCTGGGCTCACCAGTTCGTTTTGGCCGGTACGAGCACGCGGGCGCTTTTGGGGCCTCTGAGCTGTGTTCGTTCTGCAGCGGCGACTGTGAAGACGTTCATGTTGTGGAGGGTCGTTCGATCGAGTTCGGGGTTGATGGCAGGGTGGTCGAGCAGGGTCGCTACTGCTTGTAGGTCGAGTGGTTCGGTCCACAGGGGCCAAAGCATCAGATTGCGGCGTTGGTGCCGGTGCCAGAGGGTGGCGGTGACGTGCTCGCCGTCGCCAGAGATGCGGAGAAGGCGGAGCGCCTGGGTAGCGAGCCAGGTGGCGCCGGGGACGCCGGCCTCTGTCGATACTC # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCAATGAGGACCGGCTGACGAGAGCCGGTGTTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.40,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA //