Array 1 160245-155946 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQLZ01000003.1 Citrobacter amalonaticus strain S648 scaffold3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 160244 29 100.0 32 ............................. CATTTGCGCAATTAGTTCCACCGCAGATTGTT 160183 29 100.0 32 ............................. GGTATAGCCGGAACGTACTGCAAAACAAAATA 160122 29 100.0 32 ............................. AACCTTTGACGATTCTCTTAGGTTCCAGCATG 160061 29 100.0 32 ............................. ATGATGAACATGTTCACGGATGACATACTTCC 160000 29 100.0 32 ............................. CGCAGAACTGGTTACATGGTCACGCTGACGTA 159939 29 100.0 32 ............................. ATATCGCAAGAATAACTACCCTTTCCTTCCAA 159878 29 100.0 32 ............................. CGTCTGGTGTTTGTGTTGGTTTTGTTGTCGAC 159817 29 100.0 32 ............................. ATTTAAACATTGTATTATATATTTTAGGGCGC 159756 29 100.0 32 ............................. TTTTCGCAGTATCGCTACCGTTATCCCCAGCA 159695 29 100.0 32 ............................. CGTCATGCGGTGTCGTTGATGTGCGCAACGTG 159634 29 100.0 32 ............................. AAAACGCGCGTAAGCAGCGCGATCTGGCTCAA 159573 29 100.0 32 ............................. GCTGGCACGGGCAGGAACCGGTCCAGACTGGT 159512 29 100.0 32 ............................. TCCATCTGTGACGAATCGCTGTTTCCGACAAT 159451 29 100.0 32 ............................. TTACATTGAATTTGTCCTCTCTCAGAACGACA 159390 29 100.0 32 ............................. CCAGCAACATGATGCGCGATGAACGCATTCAG 159329 29 100.0 32 ............................. CAGTAACTATTGGAACCCATTGACGCGTAACT 159268 29 100.0 32 ............................. AACCTGATTCTGTCTTATATCTATGTCGGGTA 159207 29 100.0 32 ............................. ATTTAAAATTGCTGGGTCGTGGCTGCAATGAC 159146 29 100.0 32 ............................. TTCTTGTTACTGCATATATTTTTGAGGTTCAG 159085 29 100.0 32 ............................. GGTGATTTCCAGATCCGGGCGCACACGGATTT 159024 29 100.0 32 ............................. CGGCTTACAGGCTCAGGAGAGCCGGAACAACA 158963 29 100.0 32 ............................. ACGGTTTCATGTTTCTGGTGATGGGTTTTACC 158902 29 100.0 32 ............................. AATACCCAGCCTACCCTGGGTTGCCCGACACG 158841 29 100.0 32 ............................. AAGGCCGCCAGGTTGAAAGAGGCATACATCGC 158780 29 100.0 32 ............................. TTCATAAAACTCGGTCTGATGACTTCCCACGT 158719 29 100.0 32 ............................. ATGCTGACCGAGCGGGCCGACGCGATGGACGA 158658 29 100.0 32 ............................. CTCACAGAGCCCGTGCGCCAGCGTATAGAAGA 158597 29 100.0 32 ............................. CGCATCCTCTTGACGATCTAACTTTTGGTCTT 158536 29 100.0 32 ............................. CGCATCCTCTTGACGATCTAACTTTTGGTCTT 158475 29 100.0 32 ............................. CGGTATGATGTGATCAACGTCTATTGCTGGTA 158414 29 100.0 32 ............................. ATGATTCGTGCAACTCATAAAACCCCGCTGGG 158353 29 100.0 33 ............................. CCCTTGTTATGCAGATCCATGACGTACTCACTG 158291 29 100.0 32 ............................. GCGAACAACCAACTGGCAGGTATCAGAATGGT 158230 29 100.0 32 ............................. CGATCGAGGCGGGGAAAGAAGTTAAAGGTGCG 158169 29 100.0 32 ............................. TTACTGCAGCAGTTGTGACATACGTCACCTGG 158108 29 100.0 32 ............................. TCTATACTGCTCACTGGTATTCAGTCGGCATG 158047 29 100.0 32 ............................. CCCCTCCATCACGCGGGGCTTTCTTTTGCCTG 157986 29 100.0 32 ............................. CTTTGACGGCACCACCCGTTTCAACGGGGAAA 157925 29 100.0 32 ............................. ATGACGACTGTAACTATCAGGAAAAAGCGGCT 157864 29 100.0 32 ............................. CACCCTCGTTTTTTCTTTGTGACAGGCGTGAA 157803 29 100.0 32 ............................. GCTTCGTCGGGACTACTTAGATCGCGGGATGT 157742 29 100.0 32 ............................. GCTTGTCGATTACTATACGAAAATGTTATCCA 157681 29 100.0 32 ............................. CCCACAGTTAGCTATTTGTCGCGCCCTGGCAT 157620 29 100.0 32 ............................. CCGTCCGGAGAACTCAACATCGAGGGTCTGCC 157559 29 100.0 32 ............................. CGATTGCCGCTCAGGTGGCAGATGAATACCAG 157498 29 100.0 32 ............................. GCAATTGTAACTAGTGGTATTTTTGAAATCCA 157437 29 100.0 32 ............................. ACATATTCATCGTAGTAGCCACATACAACAAC 157376 29 100.0 32 ............................. GCTATATGCGTATTTGCAAAAGCGCAGGTACA 157315 29 100.0 32 ............................. CCGAGCCAGTGCAGCCATGCCTTCGCTACGTG 157254 29 100.0 32 ............................. GGTGTTGTATCTAAAATATCAATGTCGCGTAG 157193 29 100.0 32 ............................. ACTTTATTTTTCAATCCATGATTCGGATGAAA 157132 29 100.0 32 ............................. ATAATATAACTTCATATATTCAAACTAGCGAA 157071 29 96.6 32 ............................T CACACATGGACGCGGGAAAGCAGCGCCAGGAC 157010 29 96.6 32 ............G................ CCCCTTCCCAACCTTGGCGCGGGCAGTCCCAA 156949 29 100.0 32 ............................. TTCGGTGATTTCACACGCACCCGCCCAAATAC 156888 29 96.6 32 A............................ AGCATCGGCATTAGAAATGGCAAGACCTGTAG 156827 29 100.0 32 ............................. CCAGTAAAATCCACAAAAGGCGCACCGAAATC 156766 29 96.6 32 .............T............... CAGAACGCTTCCCCGGGGACGTTCCTAAAAGT 156705 29 100.0 32 ............................. CGCCGGACCTCAGAGAACCGGCGCATGTTTAC 156644 29 100.0 32 ............................. TTTATCTAAACGAGAATCATGAGACATTTTAA 156583 29 100.0 32 ............................. TATCTGCTGTTTGGATTCTGGTCCGTTACCAT 156522 29 100.0 32 ............................. AAATCTCCACCGTTAATATTTCCGTTGTTGGT 156461 29 100.0 32 ............................. TTGTAGAGGAAATCGGGATCACGCTCGTCACG 156400 29 100.0 32 ............................. CTGAATATTCAACGATAACAGCATCAGGAAAT 156339 29 100.0 32 ............................. GGTACGGAACATACTCCGTTGGATAATCATAC 156278 29 96.6 32 .............T............... CCAATCGCGGTAGCAAAAGTCCCGGTTTGAAC 156217 29 100.0 32 ............................. AGAGAGATCGGGCAGCGATTGCAGCAAAAGAG 156156 29 96.6 32 ............T................ CGGGTTTTGAGTCCACGGTATGACCGCAATGA 156095 29 100.0 32 ............................. CGGGCGCTGGTGTGCTATCCGCTGAATATCGT 156034 29 100.0 32 ............................. CCGCGAAAGCGGCTTGAAGGGCGATCTTTAAA 155973 28 89.7 0 ...........A..C..........-... | ========== ====== ====== ====== ============================= ================================= ================== 71 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATTGATTGAAGAAGTGCTGGCTGCCGGGGAGATTGAAATCCCTAAACCTTTTGAAGATGCCCAGCCTCCGGCGATCCCTGAGCCTGTTTCATTGGGCGATGCAGGGCACAGGGGGTAGCGCATGAGTATGCTTGTTGTTGTCACCGAAAATGTTCCTGCTCGTTTGCGCGGTCGTCTGGCTGTCTGGTTATTAGAAGTTCGCGCAGGTGTTTACGTTGGCGATACCTCACGTAAGGTGCGAGAAATGATCTGGCATCAGGTCACTACCCTGGCAGACGAAGGTAATGTTGTCATGGCCTGGGCGGTGAATAATGAGTCTGGTTTTGATTTTCAAACATGGGGTGAAAACAGGCGCATGGCGGTGGAACTGGATGGATTAAGGTTAGTGTCATTCCACCCTTCGTAAAATCAATGGGTTATAGTTCTTTAATAATGTGGAAAATTTGGTGAAATTTTTCTACGGCTATAATCCCTTTTAGATCAGTGATATAGTTTTAGA # Right flank : CGAATGAAGTCTTTTAACCAAAATTAAGACGCTTTCTCTGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATAATGCGCACTACGTCGCGGCTGCGGCGCTCAATTCTGTCGGGTAGCGCTTTGTCGATATGCTGCTGGTTATCCAGACGCACGTCGTGCCAGCTGTTCCCTGCGGGGAAGGCGGTGGTCCGGGCAAGCTGCTGATAACCGTCTTTCTTGCCCAGCCCCCAGTTGGTGGCCTCGACGGACAGCACCGAAATCCCGGCTTTATCAAACACCTCTGCGTCGTTACAGCAGCCCGTCCCTTTCGGGTAGTCCTTGTTCAGTCCTGGGTTTGTGCTGGCGGCGATGCCGTGGCTGTGGGCGATTTTCAGCGCCCGGTCACGCGTTAATTTCCGCACCGCTTCCGGCGTATTCTGCCCGCTGTTGAAATAGAGTTTGTCACCCACGATCAGATTATCGAGGTTGATCACCAGCAGCGTGTTTTTCTTCTCTGTTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 828189-829058 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQLZ01000002.1 Citrobacter amalonaticus strain S648 scaffold2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 828189 28 100.0 32 ............................ TGGCTAAAGAAACTGTTTTTCCGGTTCTGAAG 828249 28 100.0 32 ............................ TGTCAGGTTGCGCATATCAGCCTCCGTTCGAG 828309 28 100.0 33 ............................ GCAAAAAGGCGCATTAAAAAAGAATGCTGAATT 828370 28 100.0 32 ............................ CCATGCACGAATCGGCGGCGACCTGAAAACCA 828430 28 100.0 32 ............................ ATAAACCTCATAAACCATTTGCGCGTTTTCAT 828490 28 100.0 32 ............................ AGTAACAGTCAAATCACCATCGATTTCATATT 828550 28 100.0 33 ............................ AGCACCTCGGCTACATCCTTCGCCACAAACCAG 828611 28 100.0 32 ............................ CCTTTAACTAATTAAAAATTAAGATGCTTTGG 828671 28 100.0 32 ............................ TCCGGACAGTTGTGTTTGTGTCCGTTGTACGT 828731 28 100.0 32 ............................ TTTACGACAAGCGCCGCGCAGATGAAGTTATG 828791 28 100.0 32 ............................ GGACGCAGCACGCGGCAAAAAATCGGCTTAAA 828851 28 100.0 32 ............................ AAAAGCGCCTGGCGCTAACCGAGCAGGAAATC 828911 28 100.0 32 ............................ TAAATCGTGGTTTGACTCTCAGTCAGACGAAA 828971 28 100.0 32 ............................ TGGAGGGTGGCGCGGTCTGCTGCGATGATAGC 829031 28 82.1 0 ..G.....................TTTT | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGAGCCAGGAAGCGCGTAACTGGCTGGCGGAGAAGGGTTACGATCGGGCAATGGGCGCACGTCCGATGACGCGTGTGATTCAGGACAACCTGAAGAAACCGTTGGCGAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGGCAGGTTACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACGTATGGCTTCCAGAGTGCGCAGAAGCACAAGCCGGAAACTGCACATTAATTTTTACTCCCGCGCCTGACGTTGAACTTCAGGCATCGTTAAAATCCGTAACCTCTTTTGAGGCTACGGATTTTTTTTTATCCCATGTTCAAAGACTGACGGGCCAGGCGCTCAGTGTCAGCAGCGGATCTGTCAGCGACCCTTTTTTTAAGCCAGATTGTAATTTATTGATTTCTTGAAGAAAAACAGAATGGCGATAAAAAGGGTCAGGCGCATATTTATTGATATTTATCTTTATCGACAACGGTATAGCCATGTAATATTCCA # Right flank : TTCCTTCTGGATGATAATGCCTGGGATTGATATTTACGGCATGGATAATTTATTTATTACATTATTCATAAAATAACATTCATATTTCATATGAGCAGAAAGATAAAGTTTGCCAGTTATTGGTTTGTTGATTTTTGTCAATTTCAAAATTAAGTTCGATTCTGTACTATCGTTGCAATCCCGTCTTACTAATTATTATTTGAATAAATATGTCAGCGAATTTAATCACGCCAACGGATCTTAAAACCATTCTGCACTCGAAAAGAGCGAATATTTATTATCTTGAAAAATGTCGAGTGCAGATTAATGGTGGGCGCGTTGAATATGTGACGAGTGCTGGCAATGAATCTTATTATTGGAATATTCCAGTCGCGAATACGACGGCGATTATGTTGGGAATGGGGACTTCCGTTTCTCAGGCCGCAATGCGCGAGTTTGCCCGCGCTGGCGTCATGGTTGGGTTTTGTGGTACGGACGGCACGCCGCTCTATTCGGCCAAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 840617-841003 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQLZ01000002.1 Citrobacter amalonaticus strain S648 scaffold2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 840617 28 100.0 32 ............................ TAATCTGATGAGGCTTAATCATCTGTTCTTCG 840677 28 100.0 32 ............................ AATGACTGAGGAGCGGAAAAATGGCAACGGAT 840737 28 100.0 32 ............................ TTCGACTTTGCGGATAACGTCGTCTTTGCTGT 840797 28 100.0 32 ............................ AAGACGAACCGTTGCAACTTTTGCAAAATAAC 840857 28 100.0 32 ............................ ATAGCAACAGAATCAGCCTCTAATGCGGCCTG 840917 28 100.0 32 ............................ TCTGTTGCAGTGGACGTATGACGAGGTGGTCG 840977 27 78.6 0 C...........G.......-..G.C.G | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AACTTAACCGCTGGCCTGGGCTTAGTCTTCGCGCCGGGAAGCATGTACATCGCTGGGTGCTGTTTGGACCGGAAGGCGCAAAAGCTGACGTTCAGTTCACACCCCGGTTTATTACCACTGACATGCTGGCGCTGCGTGAAGCGGCGGTTGCCGGCGTCGGGGTGGTGCAATTGCCGGTGTTGATGGTAAAGGAGCAACTTGCCGCAGGCGAGCTGGTCGCACTACTGGACGGCTGGGAGCCGGGAAGAGAAGTTATCCATGCGGTATTTCCTTCACGGCGAGGGCTATTGCCCTCTGTGCGCACGCTGGTGGATTTCTTAACGGAAGAATATGCGCGTATGGTGGAGGATTAAAAGAGAAAGTGGGATTAACCCTTTTTTGAATGCATAACTTAACGCATTGATTTTAAAGTGGTTTTATTTTCGGGCTGAAAAAGGGGGTTGTCAGTGAAATTCTGGACTTTTATCGAAAAATCAAAAAGGTAGTCTGTTATTATTTCA # Right flank : GTAAAATTTGAGGTACAAAAAAGGCCGGAAGAACCGACCTTTTACTATCTGTACGCCATTCGGGCGTGAAAACAAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATATAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGTAACGTTTCGAGCACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTTTTAATAAGTAAAGATTTGTGCGTTTAAAACGCAGCAAATGAAATTTGGCGCATTACTCCGAAATTCTCCAAAAGCACACGGCAAAGCCGCACTTGAAGCGCAACGTATTAAGGGAGCGATGAGATAAACGATGGCGTTACCTGACG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //