Array 1 211931-209722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBJ010000005.1 Salmonella enterica subsp. enterica serovar Reading strain HA5-SE10 YZU1229_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 211930 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 211869 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 211808 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 211747 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 211686 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 211625 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 211564 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 211503 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 211442 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 211381 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 211320 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 211259 29 100.0 32 ............................. GCCCCTTATTACTCCGAAAATCCCAAAGATCA 211198 29 100.0 32 ............................. AAAAATCGGCTAACGAGGAAACGGCCTATAAC 211137 29 100.0 33 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTGC 211075 29 100.0 32 ............................. CCGTCGGTGTTGATTTTCAGCTCTTTAGCTTT 211014 29 100.0 32 ............................. GAAATATTTGCATGGATAGTTGCGCTTTATAT 210953 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 210891 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 210830 29 100.0 32 ............................. TGATATCCCTCTGGTGATAGGCGTTGAGGTAG 210769 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 210708 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 210647 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 210586 29 100.0 33 ............................. ATTTAAACCACATTGAAACGGCTATTTACTGGC 210524 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 210422 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 210361 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 210300 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 210239 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 210178 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 210117 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 210056 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 209995 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 209934 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 209873 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 209812 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 209751 29 96.6 0 ............T................ | A [209724] ========== ====== ====== ====== ============================= ========================================================================= ================== 36 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 229929-228192 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBJ010000005.1 Salmonella enterica subsp. enterica serovar Reading strain HA5-SE10 YZU1229_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 229928 29 100.0 32 ............................. GCGTGCAGCGTGTTTTAAAGGGGGTTTAATAG 229867 29 100.0 32 ............................. CCATCGCAGAAAACAAACCGGGTTTTATTGCG 229806 29 100.0 32 ............................. CCCGCCCGCACAGGGAGGCGGTAACAGCTCAA 229745 29 100.0 32 ............................. GAAACCGCCCGATTCAAAAAAACGGCCTTCTT 229684 29 100.0 32 ............................. GGCACGCTCAAACAAATTTTTGTTGGTTTCTC 229623 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 229562 29 100.0 32 ............................. GCCAGCCCAACACCAGCAATAGCAGCAGCTAC 229501 29 100.0 32 ............................. ATGAGGCCGCGATGCGCGGCTGGTCAGGTGAG 229440 29 100.0 32 ............................. TAGGTTTCTTCCTGAAGGCGAAGCATTTTCTT 229379 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 229318 29 100.0 32 ............................. CGGCGGGCTCGCTATCAGCCTTGCGGCGTTCC 229257 29 100.0 32 ............................. TTATTATAAGCGCACTCAGGCCGGAAAAGTTA 229196 29 100.0 32 ............................. GCTATTTAGCACCTTGCGGTGTTCTGCTATGC 229135 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 229074 29 100.0 32 ............................. AATTCCTCGATAGCGATCTGCACCAGGTTGAA 229013 29 100.0 32 ............................. TCTCAATGGGAAAAATCAAGTCAGATGCTTCA 228952 29 100.0 32 ............................. CGACGGTGGCTGAGTTAAAACAGGCCTGGAAA 228891 29 100.0 32 ............................. ATCGACGCTGGTCTGGTGTGGCGCGACGGACG 228830 29 100.0 32 ............................. AACGCTTTTATTTTTTATGACCCCCCAATTTG 228769 29 100.0 32 ............................. ACCGAGGTCGATCTGCTGTCTGACGTGCAGCA 228708 29 100.0 33 ............................. CACCCCATCATCTTCCGCAATCCACATTCCAGC 228646 29 100.0 32 ............................. ATTGAACCCGCCTACGCGCGGGTATTTTTTTC 228585 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 228524 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 228463 29 100.0 32 ............................. CGTTCGAACGCTACACCCTGGCAAGGGCAACT 228402 29 100.0 32 ............................. TCGCCCTTTCGTTTCGTGGGAATGTTCAACGC 228341 29 100.0 32 ............................. GTCTGCATCGCGTACAATGCGCCCGCATCGCC 228280 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 228219 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCAATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //