Array 1 26-1721 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKBG01000108.1 Acidiplasma aeolicum strain VT contig_197, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 26 30 100.0 37 .............................. TCATTTGCGCCTCCTTCAGTTCTTCCCGTGGATACAA 93 30 100.0 36 .............................. AAAGACCTTTTCATTTCTCCACCTTTTTAAAATATA 159 30 100.0 38 .............................. GCCTTGAATCAAGGTCAATGTCTCTTCTGGATATTCAG 227 30 100.0 38 .............................. GTTTCCGTTGATGTTATAGATGTTTGTTGCTCTACATT 295 30 100.0 37 .............................. GGATGTAATAAGGATCTGTGGCTGGGATGGATATGCA 362 30 100.0 37 .............................. GATCTTCAGGCAGTCTCGATGGCCCGTGTACCCCAGA 429 30 100.0 38 .............................. TTTTGAGATGCAATTTTGCTTAATCTTTGCAATGAAAT 497 30 100.0 38 .............................. TTATATATGGCAAAATATTATCCATCGCAAATTAAATA 565 30 100.0 36 .............................. ATGCGGTATCCCCTTCTCATCATACACAACTCCCTC 631 30 100.0 36 .............................. TGTATCTGCCATTGGGCATGAATCAACAGCAGCATT 697 30 100.0 35 .............................. TGGAAAAAAGTGGGAGTTGTCTTTGATGAAAAAGG 762 30 100.0 35 .............................. CTGTTTTTGTCTCTATATCTTTTTGTCCATTCTCC 827 30 100.0 37 .............................. ATAAGTGCTTTTTAATTGAGTTTCGATGACATAAACA 894 30 100.0 34 .............................. GAGAAGGGAACGAGGGCAAAAAGAAAGCTGGAAA 958 30 100.0 36 .............................. TTAACGGCCTTAAATCTTTTTTAAATTCGTCATAAA 1024 30 100.0 37 .............................. AATCATCTTTACAGGGATTGCGTATAAAACACATTTA 1091 30 100.0 37 .............................. AATTACTTCGGGAATACGTCAGAAATTAAAAAAGCTT 1158 30 100.0 39 .............................. ATATTTTTTTTGAAAAGATAAAGAAAAATATTAAAAAAA 1227 30 100.0 37 .............................. AAAAACTTGGATCTATAAGCTTGTTCCAGAGGACAGG 1294 30 100.0 37 .............................. TCCAAAAGAGCTTTATCAAAATAAAGCGTATTGTCTA 1361 30 100.0 36 .............................. GAATTATCGCCCCCCGGCGGCTATATGGCATGGTGG 1427 30 100.0 38 .............................. TTGGAATATGTTCCTGTGTACGTTCCTTCCATATTGGA 1495 30 100.0 35 .............................. TTTCAAAAGCAAAAAGAAAATTCCGAGAAATTTAA 1560 30 100.0 37 .............................. CTTCTGACACGGTAAATCTCGGCGCCTATTTGATATT 1627 30 100.0 35 .............................. CAAAATATGACAAGACAAAGCACACAAAAACAGAG 1692 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 26 30 100.0 37 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : CTTCAATCATTGTCTCTCACTATAAG # Right flank : ATGGTCGGGATTGTCTCGGCTATTGCGGGAAATTCGTGTTAAAATAGAACCTTAATAGGATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 26-1528 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKBG01000118.1 Acidiplasma aeolicum strain VT contig_205, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 26 30 100.0 38 .............................. GAGAAGGCAACAAGGGCCAAGCGAAAATTAGAAAGAGA 94 30 100.0 36 .............................. TCAAATGGCCCCGACCCGAAATACCACAACAAAGTC 160 30 100.0 37 .............................. TGATAGATGTCCTTTCGTATGCTTGTTACATCCCCGG 227 30 100.0 36 .............................. TTGTTACAGTAACGGATGCGGATGTTGTAGTTCCCA 293 30 100.0 38 .............................. CCGAATCCATCAGATGCAGGGCAAACTGTTGATTTCTC 361 30 100.0 46 .............................. ATTATATTTCCCTCAAGTAAAGGATATCTTTGAATTGGAAGATCTC 437 30 100.0 36 .............................. CCAATTCCCGAGCTTGCGTCTTTGCCAAGAGAAGTA 503 30 100.0 36 .............................. CTTTCAAACACAGGTATGTGTCAAATTTCTTCTTTA 569 30 100.0 35 .............................. TTTTACAACTTTACAGCTCCAAATGCCGGTTCATA 634 30 100.0 37 .............................. ATTTAAAATGGACAGACAAACTGCTTGGAAGAAAATA 701 30 100.0 38 .............................. TTTCATCATTGCCTATATTATTTACCATCCCACCATAA 769 30 100.0 39 .............................. TGTTAAACAACCAGAGCAAAACGTTGTTTTGAAATGTTT 838 30 100.0 36 .............................. TCCGGTCTGCCCGAGGAATCCCTTGTCATGTTCCCA 904 30 100.0 37 .............................. ATGTCGGCAGTGTGTTGGGCCCTCATTGAGCTCTTTA 971 30 100.0 37 .............................. ACAGTTGTTGATTCTGATGGGCACAGTGCATTTTATT 1038 30 100.0 35 .............................. TCCATACAAAATATGTCTGGTCTCTTCCAGATGTC 1103 30 100.0 35 .............................. CACGATTTGCGAACAGGAGTAGAACAGGCTAAAAC 1168 30 100.0 37 .............................. TTGTACACGACGTCAAGGCAGGAATAAACACAGTAAG 1235 30 100.0 35 .............................. TTTTCTCTCTCAAATGGCCCCCGAACCGGAATACC 1300 30 100.0 37 .............................. GAAAGTGGGGAGGTGTACATCCAAAATGGCAATAATG 1367 30 100.0 35 .............................. ATATTCTGTTGTAACCAGAACGAGAATGGAGAATC 1432 30 100.0 37 .............................. TAGGAATATTGTCTTTGTCCGGTTGCCCATAGTACAG 1499 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 23 30 100.0 37 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : GTCTCGGCTATTGCGGGAAATTCGTG # Right flank : ATCTTCATTCCAGGGAAAGGCTATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 1-1366 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKBG01000131.1 Acidiplasma aeolicum strain VT contig_217, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1 30 100.0 36 .............................. ATCTTCATTCCAGGGAAAGGCTATGTAGGCAAAAGA 67 30 100.0 38 .............................. GATGAAAATATAGCCCCAGCCCCACCATTTCTGTATTT 135 30 100.0 36 .............................. CGGTTAGGGAAGTCCATAGCGTGGTGGGAACCTCCG 201 30 100.0 35 .............................. TTAGGCAATCTCTGGCGGAGATAAGCTCTTATCTC 266 30 100.0 36 .............................. AGAAAAAGATGTACAAACCCTAAGAACAGATTTGTA 332 30 100.0 38 .............................. TCGGCTATGGAAGGAACGTATACAGGGACATATTCAAA 400 30 100.0 37 .............................. TAAAGGATTTGAGAAACAGGGTGAAATATAAAATAAA 467 30 100.0 35 .............................. ATCCTTCCAGCTGTCAATAACAAACTGTCTATAAT 532 30 100.0 38 .............................. TCCAGGAGTATACAGGATTTCCATTTGCATATACTTCA 600 30 100.0 38 .............................. GCATTTGCTCCATAAGGCAATGTTATCAAAGAAGAAAA 668 30 100.0 38 .............................. TTAAAGAAATATCCTGCCCGAATTAAAGAAATATCCTG 736 30 100.0 38 .............................. ATGCCAGTGCACTGAGGGAATCTTTGTTGTGTGCCAGG 804 30 100.0 36 .............................. CAATATGTCATAGGGGCTAATAAAATCAATCCGGCA 870 30 100.0 36 .............................. ACAGAATCATTGGAGAAGGTATGCCCACCGATGATC 936 30 100.0 37 .............................. ATTGGGCCTACTCCACTGGAGACCTGCTTCGAATTGA 1003 30 100.0 36 .............................. ATATTTCTCTATTTCAATAGGCGTGGCAAATATCTT 1069 30 100.0 36 .............................. ATGATAGAGATGGCAACAATAAGGAAGGAAGACAAA 1135 30 100.0 37 .............................. CTTGCTCTCCTGTCTTTAAGGCTTCTGGCCTCATAAT 1202 30 100.0 39 .............................. TGGAGTATAGCCTTTATAACTTGTGTTTGTCTGTTTATC 1271 30 100.0 36 .............................. TGTGATTTTCTTATTGAAAATGAAGACTACAGGAAG 1337 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 21 30 100.0 37 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : | # Right flank : A # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 26-1319 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKBG01000119.1 Acidiplasma aeolicum strain VT contig_206, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 26 30 100.0 37 .............................. GGATGGAAAGTTTAATGAGACTGGAGTGTTCACTTCC 93 30 100.0 36 .............................. GAGTAGTACCACAGGGCTGTACGTTATCTGGGGGAA 159 30 100.0 36 .............................. TACTCGACCCTTAAAGCGTAACTCCTTCAGGTGATA 225 30 100.0 34 .............................. GCAGAACTCGAACATCTTGTATACGACAAGGAAC 289 30 100.0 37 .............................. GCTGTTATGCTAACATTAGTATCATTGTATATATAAA 356 30 100.0 36 .............................. ATAATGTAGGACCAAATTCCGGCGTATTGTACTACG 422 30 100.0 36 .............................. TCTACAATCGAAATTTGTTGGAAATACATCACAAAA 488 30 100.0 38 .............................. TTAAAAAAAGGATTTGAAATCCATGACGCCTATAACTT 556 30 100.0 38 .............................. TCTGATTTTCTTATTGAAAATGAAGACTACAGGAAGAA 624 30 100.0 38 .............................. ATAGATAAGAATTATCTAATGGAATCTCATCCAGTCTA 692 30 100.0 34 .............................. TGGACATATCTAACAGAGAAGGAAAAGGCAATGC 756 30 100.0 36 .............................. TGCGATTTTCTTATTGAAAATGAAGACTACAGGAAG 822 30 100.0 36 .............................. ATTCTCCTCTGTTAGGGTATTGCTGCCTGAACTCTT 888 30 100.0 38 .............................. TGTATTCAAAATCTGACCGATTTGTTCACGTATTTTCA 956 30 100.0 36 .............................. TCTAAATTGCCCCAAAAACGCATGAAGTCATAATTG 1022 30 100.0 38 .............................. TCATCCAGTCTATATTCCTTCGTTGAAGGGCTATATAA 1090 30 100.0 35 .............................. TATATAGCAGATGACCCCAAAGACCTGCTAAACCA 1155 30 100.0 39 .............................. TATAAGCTTTTTTATAAGAATTCAATGCCAGAAAAGATA 1224 30 100.0 36 .............................. TAGAATGAAATACCTGAATGCAAACAAGCCTATATT 1290 30 93.3 0 .........................A...A | ========== ====== ====== ====== ============================== ======================================= ================== 20 30 99.7 37 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : TCTTTTATCTCCTCTGGTATCCCTTG # Right flank : CGAAATGAATATTCCACTGGATTATCTTCAGATATATCTGCATTAAAATTAACCCTTAATAGATCTATTCTATATTTATTTAAATCTGTTTAATTTTAAACTATTGTAATAATATAAACACCAGAAAGAATAGTCATTCTAAGCGTTATTTAAATATAACCATTTCCTTGATAAAAAATACGAGGTCAGGAGTCTTCCCCTGCTTAACAGAAAATCATGGTCTGGAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 27-1198 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKBG01000142.1 Acidiplasma aeolicum strain VT contig_227, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 27 30 100.0 36 .............................. ATGGAAGGTATGAACTGCTGCACGGAGGTGTATTTT 93 30 100.0 38 .............................. AAGGAATGAGATCCTCATACTTTCTCCGTCTTCACAAT 161 30 100.0 37 .............................. CTGTTTGCCTGTACTCCTGATTTCTCTATTTTGATTT 228 30 100.0 36 .............................. TGATGAACTATTTGAATATGTTCCTGAGTAGCTTCC 294 30 100.0 37 .............................. ATACACCCTCTCATGCCAGTGGTGCTTTTTATCCAAA 361 30 100.0 39 .............................. TCATTATAGACTAAAGTTGTGCCTGATGGCGAAGATGTG 430 30 100.0 38 .............................. GATATCGCCGCTTTCCACACGGAATGTGACGGGAACAA 498 30 100.0 38 .............................. GATAAAATAGCCCCAGGAACTCCAGCTATGGACTATGA 566 30 100.0 35 .............................. AATAGTTCGATGGATATTCCTGTATTTTATGCCCA 631 30 100.0 37 .............................. GTTCACGATTTGCGAACAGATTTGTATCACACTATCT 698 30 100.0 37 .............................. GTTTTGTGGGATTTTGTGGACTGCCCATCATTTTTGA 765 30 100.0 37 .............................. ATTTATGCTTATTTTTGGGTTTCACTTTTAATTTGAA 832 30 100.0 37 .............................. TAACGATTTTCCCTACTTCGTCCGGGTTTTGAGACAA 899 30 100.0 39 .............................. ACTGGCTTAAACAGATATCTACCTAAAAAGGTGAAATTA 968 30 100.0 40 .............................. TCGTGAACCACAGGATTATTCTCGATTGGCTGTATGATTG 1038 30 100.0 35 .............................. ACGATTTGCGAACAGACGTACACGAGGCAAAATCA 1103 30 100.0 36 .............................. TATATTGGATTATTTTAGGTTATTCGGGGTCGTATG 1169 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 18 30 100.0 37 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : TTTATAATACAGATTATCTATAACGGG # Right flank : AGACCCGGCTTCGGCAAGGAAAACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 1873-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKBG01000145.1 Acidiplasma aeolicum strain VT contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 1872 29 100.0 39 ............................. TATGAAAATGAGTATGATATTGACGTCCCGTTTTCAAGG 1804 29 100.0 38 ............................. TCTGGAGAATATCCAGAATGGTTGATGTCTGATAATTA 1737 29 100.0 42 ............................. TCCATCATAGTCCATAGCTGGAGTTCCTGGGGCTATTTTATC 1666 29 100.0 39 ............................. TCCTCACTGCTTACCACCCTTTGAGTATTTCCTTTCATA 1598 29 100.0 36 ............................. TGATATGTGGACCCGAGAACTGCAATGACATTAATC 1533 29 100.0 39 ............................. TTAAATAGAGATGAAGGTACAATAAGAGGCCAAACACCA 1465 29 100.0 38 ............................. TATATGGTACCCGAATTTTTCCAGTGAGCCTGGATTTA 1398 29 100.0 38 ............................. GCGATGAGGCGCCATATGAGGTTGCCCATTACCATCTA 1331 29 100.0 38 ............................. GAAGCTCGAGCCTGAAGAGCGGAAAAATTCAAAGTATC 1264 29 100.0 36 ............................. GAAGTCCCCCCTGAAATGCTGGATGAAAAGGAAACG 1199 29 100.0 37 ............................. GGTGTAAAAAATGGAAAATGAAAAAATGAATGAAAAA 1133 29 100.0 40 ............................. GCAGTGGAAAAATCAGATATTGATTTAGTTTTTCACAATC 1064 29 100.0 38 ............................. GAAAGAAGAGCCTATTAACATTGGTGCCAGGGGATATA 997 29 100.0 39 ............................. GAGCTACCCTGTATCTTCAATCATTGTCTCTCACTATAA 929 29 100.0 37 ............................. GATGAGCAATACCGGTGATACAGCGGCCACCATACTA 863 29 100.0 39 ............................. GAGGTCAGCAAATAGTAATCCCATTGTCGGCATTACAAT 795 29 100.0 36 ............................. GTGTGTTACAGCAGTTGTTCCATTTGCTTCTGATAA 730 29 100.0 39 ............................. GTATAACCAAGTATCTGTCTTATTAAGTTCTTAGTTATA 662 29 100.0 38 ............................. GAATTGTCTAAGCAAATGAAAGATGATAGTAGATCAAA 595 29 100.0 38 ............................. GGTTCAATCGGTAGTACCTTTAAACTTTCCATCTAATG 528 29 100.0 37 ............................. GTTTGCAAATATTCCCTCAAAAGTGCTTTTTCTTGCA 462 29 100.0 39 ............................. GAGTGTTAAAAAAACTCCACTACCACGATAATTATTTAA 394 29 100.0 37 ............................. GATGCCTACAACAGTTAGCCCCGGCTTCGGCAAGGAA 328 29 100.0 42 ............................. GAAACTTTTCAAAATAATGTTTTACTTTGGCTTTTCAATAAA 257 29 100.0 36 ............................. GGATTTGTATTATTTCCAACAAATTTCGATTGTAGA 192 29 100.0 40 ............................. GTACAACAGGATTATCTGTAATGGGTTTTACGATTGAATG 123 29 100.0 39 ............................. GGCAAATATATATGCATATAATGCCACACTCGAATCATA 55 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 28 29 100.0 38 GTTAAAATAGAACCTTAATAGGATTGAAA # Left flank : GAGGGAAACTGTTTACGTTTCTTCCTTGAGAAGGAAAGTTTCTAATAAGTTTCTAATACGTCTTGAGATATATAAAGTTGAAAAACAGATAATGGAGAATAAACAATACAAACCATATATTATGAGGGATTAAATTGTGGATTATACTTACATATGATATTAATGAAAAAAGGGTTGATAAAATTAGAAAGATTTCATTGCAATATTTAATTAGGATTCAAAATTCTGTATTTATAGGAGATATTGGATGGGCAAGCTTAAGAATTTTAAAAGAAAGATTAAAAAAAGAAATTGTTGAATCAGAGGATTCAATACAGTTTTTTATTCTTAGGGATGAAAAGCTTGTAAAGAGAATAAAGCTTGGAGTGTCATATGAATTCAGCAATATAATTTAACATATGATCAAACCTTTAAATACTCTTTTCCAATTATGAACTTTGAGTACTTTTTTATAAAATTGTCATAAGTTTTTTATTTATAATACAGATTATCTATAACGG # Right flank : AGATCTTCATTCCAGGGAAAGGCTATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 795-228 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKBG01000177.1 Acidiplasma aeolicum strain VT contig_259, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 794 31 96.8 37 G.............................. AATGGAGATATTGTCCAGATACCATTTAAAATAGAAT 726 31 100.0 35 ............................... TCTATTTTATCCTTATTTTCTATAAGGAAATTTAT 660 31 100.0 35 ............................... TGTATTCTTTCGCTGAGGGGCCATATAAAATCCTA 594 31 100.0 36 ............................... AATTATGAGAATATCTGGGAAGATATCCAAGAAAAC 527 31 100.0 37 ............................... CTTAATTTAATAGCAAGCATATTGTCCTTTAATTTAT 459 31 100.0 35 ............................... GGGAAGTCATGAGATGATACATAACCTTTGCGCCT 393 31 100.0 37 ............................... ATTTATTGCCTCCAGAAATTTATTTACCTGTTCCAAT 325 31 100.0 36 ............................... TAATCTCTCCAACGTTGGTTCTTCGCTGGCTATTTC 258 31 93.5 0 ..........................A...A | ========== ====== ====== ====== =============================== ===================================== ================== 9 31 98.9 36 AGTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : ATTGAAAATGAAGACTACAGGA # Right flank : ACGAAATGAATATTCCACTGGATTATCTTCAGATATATCTGCATTAAAATTAACCCTTAATAGATCTATTCTATATTTATTTAAATCTGTTTAATTTTAAACTATTGTAATAATATAAACACCAGAAAGAATAGTCATTCTAAGCGTTATTTAAATATAACCATTTCCTTGATAAAAAATACGAGGTCAGGAGTCTTCCCCTGCTTAACAGAAAATCATGGTCTGGAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 501-64 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKBG01000218.1 Acidiplasma aeolicum strain VT contig_296, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 500 30 100.0 39 .............................. GGCATTACAATTTCAATAATGATAACAGACATAGCTTAT 431 30 100.0 36 .............................. TGGAATTGCCGTTTCTTGAATAACCATATAAGGACA 365 30 100.0 39 .............................. ATTTTTATCGGTTTTGCCATCATCCCCCCGCCACCTTGT 296 30 100.0 36 .............................. TTTTTGGATTTGTTCGTATGTCCAGTTGTAAGGGTA 230 30 100.0 38 .............................. GCTATCGGTGCCAGCGAAGCAGGAGGGGTAATAAACGA 162 30 100.0 39 .............................. GTACTACTCCACATGGAACGGAATTAGATAAGCTTCCAA 93 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 100.0 38 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : GCAAGGAAAACTTCTTTATTTCAT # Right flank : GATGGTCTCGATTGTCTCGGCTATTGCGGGAAATTCGTGTTAAAATAGAACCTTAATAGGATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 26-457 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKBG01000219.1 Acidiplasma aeolicum strain VT contig_297, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 26 30 100.0 36 .............................. AAATCAATCCGGCAGACTTCTTCTTCATTATTCATT 92 30 100.0 37 .............................. AGGGTAGTCCATAGAGCCGTGACCTCCGATATAAATA 159 30 100.0 37 .............................. AATCTATATCAGATGGAGCGTCCTCCTTGATTTCAAG 226 30 100.0 39 .............................. GATGGGATAGCAGAAGCTTTAAAGTTCACAGAATAAAAA 295 30 100.0 38 .............................. AATATATCGTTTAATAATAAGAGTAATATATTACAATA 363 30 100.0 35 .............................. ATAAAAAATGGAATTGATAAAAGGGATACCAGAGG 428 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 100.0 37 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : GTCTCGGCTATTGCGGGAAATTCGTG # Right flank : CTTATTGCCTTCTCTTTTATCTCCTCTGGTATCCCTTGTTAAAATAGAACCTTAATAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 2889-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKBG01000074.1 Acidiplasma aeolicum strain VT contig_166, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2888 30 100.0 37 .............................. AATGATCATGTTCTTATTGTTGGGTCTTCTGGTTCGG 2821 30 100.0 38 .............................. ATTCTTATAGCCTGGCAAATACACCTCTGTGAAATCTA 2753 30 100.0 37 .............................. CGTGTATTTTCTTGCCGCTTTCCGATGTAGATATGTA 2686 30 100.0 35 .............................. AATTGTGTTAAGGGTGTTAAGATTGTTAATAACGA 2621 30 100.0 37 .............................. TTCGGTATCTTTTGACCATCCCTTTTTGTATATTCAT 2554 30 100.0 37 .............................. TCAACAATAGAACCAGAACGACTGACATGATGAAATT 2487 30 100.0 35 .............................. TGATATAAATATAATAGGAATATGATAAGAATATA 2422 30 100.0 40 .............................. CATGCATACCCTGTTGCTTCTATAATCATTTCAAGGCCTG 2352 30 100.0 38 .............................. ATGGTCAAATACGAATTCCGATTTGTTGCCGCAAAATG 2284 30 100.0 37 .............................. TGGTAAGAATGGCTATAAAAGAGTACAGAAAAAAAGT 2217 30 100.0 35 .............................. CCTGAAGTTATTTCCAATCCGTTCTCATATATCTT 2152 30 100.0 39 .............................. AAATGAAAAAACAGAATAGAGTGACAATAACATTATCTG 2083 30 100.0 37 .............................. AGTCATGAAATGATGCATAGCCTTTGCGCCTATAATA 2016 30 100.0 36 .............................. AAAAATAAAAATTAAGAAAAAAAAATATTAATAATC 1950 30 100.0 38 .............................. TTGCATGGGCCGCCAATACCTACACTGTTGATATGATA 1882 30 100.0 37 .............................. GATATTAAATAGTGATTTTAAAAAAGTAATGTCTCAA 1815 30 100.0 36 .............................. TATCAAACGGAATATATAATGTATATCATATCAACA 1749 30 100.0 37 .............................. TTTTATACGTCTGTTATATGGAGTATTTTCTTGATGG 1682 30 100.0 36 .............................. GATTATAAAAAAATTAAATATGTAAGACTATTAACA 1616 30 100.0 34 .............................. CTTGTAGGGAATTCCTTTACGCTTTCTATTTTCA 1552 30 100.0 36 .............................. GAACTTAATTCTTTGCTAAAGGAGACTAAATTTAAA 1486 30 100.0 36 .............................. AAAAAATGCTGGAACAGCTGGAACAGTTTTAGAGAC 1420 30 100.0 36 .............................. TGTATTCCTTCTCTAAGGGGTCATAGAGAACTCTGA 1354 30 100.0 37 .............................. TTTGAATGGTTTAATTCCGTTTGGTGCTATGAATAAG 1287 30 100.0 37 .............................. AAAAAATACTGGAACAGCTGGAACAGTTTTAGAGATA 1220 30 100.0 38 .............................. ATGATTATTATTTATGACTAATTTAAAAAAGATTTAAG 1152 30 100.0 36 .............................. ATCTAACTCCTGGCATGTTGAATAATTTTGGTTATA 1086 30 100.0 35 .............................. TATATACAACTTAACAATACTATATTAAGTATGCA 1021 30 100.0 37 .............................. TGTATACACTTTTCCATCTTCTGTTGACAACACTTCG 954 30 100.0 39 .............................. CTTGCTTCTCTTCAACATAATTTGCTTCGCCTTCGTATG 885 30 100.0 38 .............................. ATTTATATGCCTTATTATAGTTATAGCCAGGTTATTCA 817 30 100.0 36 .............................. ATATCTTGTCTATCCCTTTTGTTTGCCTTGCTTTGT 751 30 100.0 39 .............................. TTCCAATTGCTGAAGCATCAGGCTAAACGGTATTGTATA 682 30 100.0 35 .............................. TAGGAGACCAAGAAAACGGGTTTTCATCGAATTCA 617 30 100.0 36 .............................. AGGTATTCAGCCCATGCGTTGACGAAAAAACCGGTA 551 30 100.0 36 .............................. TTTGCACTTATTTAATGTTTTTTTAAGTATTATTAA 485 30 100.0 35 .............................. TTTCCCGTAAAAAAAATTAAAAAAAAAAATTAAAA 420 30 100.0 37 .............................. TTAACTTATATCCAATATCGGATAAATGCCTTAAATT 353 30 100.0 37 .............................. CATTAAACGATGTTTCTGCAACGATGGCTAGGTCATT 286 30 100.0 36 .............................. GCGGATTTTCTTATTGAGAATGAAGACTACAGGAAG 220 30 100.0 36 .............................. GGCATGAGCGTAACGTGGTATTGGGCGACTATCCAA 154 30 100.0 36 .............................. ATAAGCTTCTCCTTATCTTGTAGCGAGATAATTAAA 88 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 43 30 100.0 37 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : TTTATAATACAGATTATCTATAACG # Right flank : GCCAATTGCCTTCTCTTTTATCTCCTCTGGTATCCCTTGTTAAAATAGAACCTTAATAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 26-2663 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKBG01000076.1 Acidiplasma aeolicum strain VT contig_168, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 26 30 100.0 35 .............................. GAGTTGTGGGCATATACTAAAATATCGGGTAGATG 91 30 100.0 37 .............................. GGATCTGAAATAGGTCATGCACTTGTTTCCTCATCAG 158 30 100.0 38 .............................. CGATGTAATCATAATAAGACATTATCCAGAGTTATTTA 226 30 100.0 39 .............................. TATATCATATTTTTATGATATAATATATCATATAATATA 295 30 100.0 36 .............................. TTCTTGCTCGAAAGTATTCAAAAGTAGTAAAGTTTA 361 30 100.0 39 .............................. TGTAGACCTATTTAACTACTTTTTATTTTTTTTTATCAA 430 30 100.0 36 .............................. CCCTATCTGGGGGAAATTGGTTTTACGGCGAGCAGA 496 30 100.0 37 .............................. TGTATGCGAACGTGCATATAACAAAGCAATCTTCATT 563 30 100.0 37 .............................. ATTCCACAAGATACTTTCCGTGCATGGGCGCACGAAA 630 30 100.0 37 .............................. TTGCTTGCGTCTTTGCCGAATGAGTCTGATATTATCA 697 30 100.0 38 .............................. GTTTATGCTGACATTTATCGAATATTATCCACACAACC 765 30 100.0 41 .............................. GTTATTAGGATATACCACATTCTATCCTATATACATTTAAA 836 30 100.0 35 .............................. GATTTCCCCTAATGAGCAAGAATTATCTAATGGAA 901 30 100.0 37 .............................. CAGATAGTGATGTAATATATGTCGATTTGGTACTAAA 968 30 100.0 37 .............................. CTTATGAAAAACGCTAATAAATCGCTTTTCAAAATAT 1035 30 100.0 35 .............................. TTTATTTTCGGTCTTCTTCATTCAACACCCTTATC 1100 30 100.0 37 .............................. TACATCCAGAACGGAAATAACGCGGGACCAAACTCGG 1167 30 100.0 36 .............................. TGCATATTCGTATTTTTGGATTTGTTCGTATGTCCA 1233 30 100.0 38 .............................. CTGGTTTCGTATTTTGTTGATTTTGTGATGTATTTCCA 1301 30 100.0 36 .............................. TTATGATTTTTGCGAATTTTTCTGGGTCTGTATTCA 1367 30 100.0 37 .............................. ATGGTCTCGATTGTCTCGGCTATTGCGGGAAATTCGT 1434 30 100.0 36 .............................. TCGGGCAATGATTCTTCCTGTAGTCTTCGTTTTCAA 1500 30 100.0 35 .............................. ACTGCAGGAAATGGCGAATTCCCCCTAACTCCAAA 1565 30 100.0 37 .............................. TTTAGGGATACCAGTAGGGGATATACATCTGTTCCTT 1632 30 100.0 37 .............................. GAAGGGCTGTACAGAACTCTGAAAAATTTCCCTTCTA 1699 30 100.0 37 .............................. AGAAAAAATGGAATATGAAAAAGATATAGAATTGATA 1766 30 100.0 38 .............................. TTTGTTGAAGGTCAAAACATTAACAAATATTCCATAGG 1834 30 100.0 38 .............................. ATATTTTTAATTCGTTTATTTGTTTCTCTATTGAGGCC 1902 30 100.0 36 .............................. AAAAAACAGGTTTTCGATATCATATACCAAAGTATG 1968 30 100.0 38 .............................. CAGGAAGATTTGCAATTATTCCATCCGATAATTTCAAA 2036 30 100.0 36 .............................. CTCCTAACACCGAATATATGCCTATTATTATTATAT 2102 30 100.0 36 .............................. CTTCCTGTAGTCTTCATTTTCAATAAGAAAATCATA 2168 30 100.0 35 .............................. TCAAATGCCCCCCGAACCGGAAAGTTCTATGACTG 2233 30 100.0 36 .............................. CGGATAGTTTTTACCCGTATTAATTGATAAAAAAAA 2299 30 100.0 36 .............................. AATACGGATAGTTTTTACCCGTATTTGCCGTAAAAA 2365 30 100.0 36 .............................. ATGAAAAAAGAGGCGGAGTTAGAAGAGAAGTATAAG 2431 30 100.0 38 .............................. ATTAAAAATGTAGCACTGTTCCACTTTTTGTTAAAAAA 2499 30 100.0 38 .............................. GAAGGAACAGATGTATATCCCCTACTGGTATCCCTAAA 2567 30 100.0 37 .............................. TTAATTTTATAAAGTGTTCCAATAATTATATGGCTGG 2634 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 40 30 100.0 37 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : TAGATCAAACATACAATTGTGTCCAG # Right flank : AATATACCAAGCCCAGCACAGTTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 26-5912 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKBG01000291.1 Acidiplasma aeolicum strain VT contig_94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 26 30 100.0 35 .............................. TTGTCTGAAACATTTCCCAGTATATCTAATTTCAA 91 30 100.0 35 .............................. GCGATCGGCGCCAGCGAAGCAGGAGGGCTAATAAA 156 30 100.0 36 .............................. AGAAATCGATCTTTTTAAATTTACAGAACCACCTAT 222 30 100.0 38 .............................. ACAGTTTTGGCTTATCCAGTAGCTTCCATCATCGTTTC 290 30 100.0 35 .............................. CCAGGTGCCCTTGTCATGGGAGATAATGGAATAGT 355 30 100.0 36 .............................. AATTTAAAAAGATCGATTTCTAACTCCTTTAATTCA 421 30 100.0 37 .............................. TGCAAGTGGAAGATGGAAGAACTGGTTCCAGTTCTTA 488 30 100.0 38 .............................. TTGGAATGTGGACATCGTAAATGGTTTTCCGATATTTT 556 30 100.0 40 .............................. AACATTGAGCAACAACATGTCAGGATCCTTATTTTTTTTA 626 30 100.0 38 .............................. TTTTCACGCCATCTGCCATCTTTTTACGGACGCCACCG 694 30 100.0 37 .............................. GTGATGTTGACGTGTTTACCCGCACGTCCACAGACTT 761 30 100.0 37 .............................. AGGTAAATAATGCATCTGGAGAAAATCTTGCATTTTA 828 30 100.0 36 .............................. TCATTCCAAAAACAAAAACGCCTGCTCCTATTCCTG 894 30 100.0 35 .............................. AAAAAATGGAATTGATAAAAGGCATACCAGAGGAG 959 30 100.0 36 .............................. TTCTTTTTGTTTTCATTAATAGATGTATATATTAAA 1025 30 100.0 39 .............................. CTTGATACGCTAACGTTTCCGTAATATTCATAATCTATG 1094 30 100.0 36 .............................. CTGGTGCGAGGTAGATCAAACATACAATTGTGTCCA 1160 30 100.0 36 .............................. TATTTTGTTTGTGTAAATATATATGAACAGGTTTGA 1226 30 100.0 37 .............................. GTCCATATTTAAGCCATTTTCATATCCTTTATTAATT 1293 30 100.0 34 .............................. AAGAGTAACCCAATACTCCTTTTGTCCTTTTCAG 1357 30 100.0 37 .............................. AACATCAGCCAAATTAAGCAATTTTTGAATTTCATCA 1424 30 100.0 37 .............................. AAAGAAAGAAGTTTCAATTTGTATGCTATGTCTGTTA 1491 30 100.0 37 .............................. ATGACTGCTGGGCATGATATTGAAAAAGGAGCAACTA 1558 30 100.0 38 .............................. GCCATTGAAAATTTATTAATCGTCCATTTGCTGTTATC 1626 30 100.0 34 .............................. GGGGGTTATTGGGGAAGTGGTGGGCGTTATTCCC 1690 30 100.0 38 .............................. GAGATCGCCACTTTCCACACGGAATGTGACGGGAACAA 1758 30 100.0 37 .............................. ATCATAATAAGAGATTATGTAGAGTTATTTAATATTA 1825 30 100.0 38 .............................. GGGAAAATCCATTGCTGTGCTATCCCCAACATAGATAT 1893 30 100.0 39 .............................. TTCCTTACTCTAACCATCGACCCGAAAAAAGTAGGATGG 1962 30 100.0 36 .............................. AGTGAGGCAGGAGGAGTAATTAACGATATATCGGAT 2028 30 100.0 36 .............................. TCATAATTTAAACCCTCCAAAGAAATGTTTAATAGC 2094 30 100.0 36 .............................. TCAGCAGTCCAGCATCCACCGCCTCCACCCGATCTA 2160 30 100.0 38 .............................. TTTGCCCTGCTTGTGGAGAGGAATTATAAAGGTGATTA 2228 30 100.0 37 .............................. ATAGTATTCCTGTCGCTGGTTTCAGCCGTATTTTTGG 2295 30 100.0 38 .............................. AGTACCCCTTTTATTACATTCTTTTCAACATTGCTTGC 2363 30 100.0 37 .............................. AATAATTATTACTCACAGTAATATTTTTGAAAATTAT 2430 30 100.0 35 .............................. ATCTTCAGAGAAATAGTATATGTGCCCGGAGAAGT 2495 30 100.0 38 .............................. CTTATATGGTTATTCAAGAAACGGCAATTCCAAACAAG 2563 30 100.0 36 .............................. GATGTGTCTACTGCCTTTTTGAACCCCGGAATTAAA 2629 30 100.0 35 .............................. ACTGTCAATTCTATATCGAATTTTCCTGGATTTGA 2694 30 100.0 37 .............................. AAATGGTAAAATGAAAAAACAGAATAGAGTGACAATA 2761 30 100.0 38 .............................. GATGGCGATATCGCTTCATTGTTTGAGCCATGGGCATC 2829 30 100.0 38 .............................. TTAGTAACAAAATTAGTATATTCACGTTTCTCAAATGG 2897 30 100.0 36 .............................. GTATCGGCTATGCAAGGAACGTATACAGGGACATAT 2963 30 100.0 36 .............................. ATAAATCTAGGGGCGTATTTGCTATTCTATTACGAA 3029 30 100.0 37 .............................. GCAATAGGTGCGTCAGAAGCGGGGGGTGTCATCACTG 3096 30 100.0 36 .............................. GGACCAAACTCGGGAGTTCTGTACTATGGGCAACCG 3162 30 100.0 37 .............................. TTGGTACGTTTTGTATATAAGCAAATGCACCAATACC 3229 30 100.0 37 .............................. ATTGTTAAGTTTTCACTAATTACATCACCATTACTAG 3296 30 100.0 35 .............................. TAAAATAGACTTAAGGCACTCATCGAGTGGCAATA 3361 30 100.0 35 .............................. GGGAATTCCTTTACGCTCTCTATTTTCACACTCAT 3426 30 100.0 37 .............................. ATTTCGTCCGGGTCTTTGACCGGCAAAAAGAATATGC 3493 30 96.7 36 .............A................ GCGATAGGGGCATCCGAAGCCGGAGGGGTTATCAAC 3559 30 100.0 34 .............................. CATGTTCTTGCTACTATATTCTGGGGTCTATTTG 3623 30 100.0 36 .............................. CTGAGAGTAATATATTATTCACACTCATTTTTTATT 3689 30 100.0 35 .............................. GATGTAACCGATGTACCGCCGATCGTCCATGAATA 3754 30 100.0 37 .............................. TGTATTTAAGTATTCCAGGATTCCCCGGGCAATATCA 3821 30 100.0 37 .............................. TCCGTAGCCTACGAAGTATGGAACTACATGGCATATT 3888 30 100.0 36 .............................. CCGGCAAGTGCATCGAATGAGGTAGTGAACACTCCA 3954 30 100.0 36 .............................. GGTAACATGGTAGAAAAGGCAACAAGGGCAAAGCGG 4020 30 100.0 37 .............................. ATATTACACCTCTTCTTTTTTCAATGGCAATTCTATG 4087 30 100.0 36 .............................. TTCATAGTAAAACCCTTCAGCGAATGCAAGAACAAG 4153 30 100.0 37 .............................. ATATTATTAAATACGGATTCTGTGTCTGCTAAATCCA 4220 30 100.0 37 .............................. ACTGTTACTGTAATGGTTTTCTTCCCCACTGTTCCGT 4287 30 100.0 35 .............................. AATACTTAGAAGCACGGAAGAAAAGGATGATGAAA 4352 30 100.0 36 .............................. GAATTCCCAGGGCTTGTAACGTTCAAAAAGAACGTG 4418 30 100.0 36 .............................. TTCTAATGGTTCTAAAGTTTCTTCTTCCTTAATGCA 4484 30 100.0 37 .............................. TAGCTACATCAAGGACCCCCCCGAGGCCGTAACCCAA 4551 30 100.0 35 .............................. TTATTCCTGGCACTAGCGGCAATGCCCAAAGCCTA 4616 30 100.0 37 .............................. TGGATTGCCTTTAATCGGCGTTGCTCTTAATCCATCG 4683 30 100.0 37 .............................. ATGGATTGTGCTGAAGTTGGAGACTGGGTTGTAGAGG 4750 30 100.0 38 .............................. ACTTCTCTTGAAGGATATTCCATTTTTGCTATTTTCTT 4818 30 100.0 38 .............................. TCTGTCTCGAAAGTGGCTTTTATGCCTGCCATTGATTC 4886 30 100.0 37 .............................. TATACTAAAACATTCTGACAGAAAATTCCAGAAATTA 4953 30 100.0 35 .............................. CAGTTACCTCCTCCTTTACCCCGACAAGTGATCTG 5018 30 100.0 37 .............................. AATATACCAAGCCCAGCACAGTTATATCCTATATTAA 5085 30 100.0 36 .............................. TATAAAAGAAGAAAACTAATAAACCGAATTAAAAAA 5151 30 100.0 37 .............................. TGTTGTTGTATCTGGATTATAGATAATTATTTGAAAA 5218 30 100.0 37 .............................. TAATGCTGTCTGCCCCAAATATATCCATTTTATTCCA 5285 30 100.0 37 .............................. TATTGATATTGGGTTGGCATAAAATGACGAGTATCCT 5352 30 100.0 36 .............................. TTATTCCAACTATGGAAAAAGAAATAAATAAAAAAA 5418 30 100.0 36 .............................. CTGGACCTGTGTGAGATTGTTAGGAGAGGCTGACAC 5484 30 100.0 37 .............................. CCTGTCTCCAGCCTGCCATATTGTTCCTATGAACTTG 5551 30 100.0 36 .............................. TAGATAATACCTTGCTTTTGCTTCCCCAATTCCATA 5617 30 100.0 36 .............................. TTCTATGGCATTGGTGCACCACAACCATGGATGGGC 5683 30 100.0 36 .............................. GATTATACAGCCTCACAGTGGCAGAGCATCTCGCAT 5749 30 100.0 38 .............................. TTTCTAATCTTTCAAGATTTTTTAAAGATGTTTTATAA 5817 30 100.0 36 .............................. AAATAAAATGCTGATACAGGTACACTTTACAAAAAA 5883 30 93.3 0 .........................A...A | ========== ====== ====== ====== ============================== ======================================== ================== 89 30 99.9 37 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : GCAAGGAAAACTTCTTTATTTCATTG # Right flank : CGAAATGAATATTCCACTGGATTATCTTCAGATATATCTGCATTAAAATTAACCCTTAATAGATCTATTCTATATTTATTTAAATCTGTTTAATTTTAAACTATTGTAATAATATAAACACCAGAAAGAATAGTCATTCTAAGCGTTATTTAAATATAACCATTTCCTTGATAAAAAATACGAGGTCAGGAGTCTTCCCCTGCTTAACAGAAAATCATGGTCTGGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //