Array 1 1170093-1169391 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE340297.1 Propionibacterium sp. oral taxon 192 str. F0372 acKdT-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1170092 29 100.0 32 ............................. TTCCTCATCGGAGGACGACCCGGTGAGCAGAT 1170031 29 100.0 32 ............................. TGATTCGCCGTGTCGAGGTAACGCTCTGAGCC 1169970 29 96.6 33 ............................G GAGTGTGCATTTGACGCCAAATATGACACGTAG 1169908 29 96.6 32 ............................G TCCCGGTAATTGTCTGCCCATGTGAGCATAAT 1169847 29 100.0 32 ............................. TCAGCCCCGAATACAATATCCTGATAACGAAC 1169786 29 96.6 32 ............................G CCCCGTCCGATTCGTGCATCCTCGACAAGCGC 1169725 29 100.0 32 ............................. GCCGCCAAACGCATCCTCGGGATCCACTCACC 1169664 29 100.0 33 ............................. ATCATCGGCTTCCATCAGCGCATCCGGGAAGCG 1169602 29 96.6 32 ............................G GGTCGCGTGACCTTCTGTGGTGTCCTGGAAAC 1169541 29 100.0 32 ............................. TATCCAAACCATCTCCGTGCCCAGATGGGCGC 1169480 29 96.6 32 ...................A......... CAGACGCGCGGCACCTTGGACTGGCGGACCGA 1169419 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.6 32 GTGCACCCCGCGTAAGCGGGGATGATCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AGGGCGACGACGTCACGGCGCGAGAGGTTGCGGCTCACCCACTCGATCTGGTCCGCGTAGACGTTGGGCGTAGCGCGATCGACGGTGGCGGGCAGGTTGAGGATGATCTCGCGGTCGGCCTCTGGCTGCCACACGTCCATGACGGCCTCGCAGACCTCAAGGGAGTACTCGCGCTCGGTGTCGACGAAGATCTCCGGGGAGTACTCGAAGCCGAAGACGGTGTCGTCGGTGAGGACCTTATCCGCCCGGGCCATGACCATGCGGATGCCGTCGACGGCGAGCTCGTGCACGTCCTGCCGGCTCATGCGGAAGACGACCTCGCGGAAGAGCGGGGACAGCGCGTTGTACAGGTGGACGGTCGCACGCGGGAGACCGACGCAGGCGTCGAGGGTGCGGTCGATGAGGTCCTCGCGGGACTGGGTCAGGACGCTGATCGCCACGTCCTCGGGGTTGGCGTCGTCCTCGACGAGTGGAGCGCACGAAGTCGTAGTCGGTCTGGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACCCCGCGTAAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1172967-1171838 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE340297.1 Propionibacterium sp. oral taxon 192 str. F0372 acKdT-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1172966 29 96.6 32 ............................T GTGCGCTGGCCAGCGGTATCAGCCGGAGTGCC 1172905 29 100.0 32 ............................. TTAGCAACAGAATCAAAAGCCAAAATCCGACG 1172844 29 96.6 32 ............................C TCGACAGGATTCGACAATCGCCGACCGAGCAG 1172783 29 100.0 32 ............................. AACAGCGCATGAAAACGGTATCTACAGACTCC 1172722 29 96.6 32 ............................T AATTCCAGCAGGAGCAGCGCATAAAAACAGTA 1172661 29 96.6 32 ............................T TTTAGTAGCATATCGTCCGACGTGGTGGGCGC 1172600 29 96.6 32 ............................T AGTCGATTACCTGGTATGCGTTCCCTAAGTCC 1172539 29 100.0 32 ............................. AATAGCCCGCCATGGTCATGTCCCGCGCCATC 1172478 29 100.0 32 ............................. TAGGGACGCGGCACTGGAAAACATGGCTCAAT 1172417 29 96.6 32 ............................C ATGGGTGGGGTCAAACACGGGGTCCGCCGGAA 1172356 29 96.6 34 ............................C ACGGTATCGTAGACGCCAGGAATGTAACCACTGC 1172293 29 100.0 32 ............................. CCGGGGATTTGGCACATTGAGCGAAAGGATTT 1172232 29 96.6 32 ............................C AATGAACTCGTCGTGCATGATGGTGTGAACTT 1172171 29 100.0 32 ............................. CAATCTTCGTCGAGTTCGTCGGGTAATCCGAA 1172110 29 100.0 32 ............................. TCGTACCCAACCTCGGCAGGATGCTCCGATGC 1172049 29 96.6 32 ............................C AACAACCTTCCTTTCAATAAACCGCGCCTGCG 1171988 29 96.6 32 ............................C GCATTGCCTAGCGGCACACCCTGCCACGGGTT 1171927 29 100.0 32 ............................. GCGCACCACTTACTTTCTTTTAGCTCTTTTTT 1171866 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================== ================== 19 29 98.0 32 GTGCACCCCGCGTAAGCGGGGATGATCCG # Left flank : GCGTAAGCGGGGATGATCCGATTTTCACTTCCCCGTCGGCGAGCGACCGGAAGTGCACCCCGCGTAAGCGGGGATGATCCCAATCAGGTACTGTCCCATGGCGGCCCAGGGAAGTGCACCCCGCGTAAGCGGGGATGATCCGACAGGATGTGTGCGTGCAAGATCAATATAGCAGTGCACCCCGCGTAAGCGGGGATGATCCGCAATCTGGACGGATTTTTGGATGGGATATGTTGTGCACCCCGCGTAAGCGGGGATGATCCTTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGTTGTGCACCCCGCGTAAGCGGGGATGATCCTTGACGCGCAGATTCCAATTTTCCCATACAGAA # Right flank : CAGAGAGTCTAGCCGCGCAAGAAATAAATCAAGTGCACCCCGCGTAAGCGGGGATGATCCGACTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAAGTGCACCCCGCGTAAGCGGGGATGATCCGACTGAGAAAGCTTGAACTAGACGCAGCAGGTCGTGCACCCCGCGTAAGCGGGGATGATCCTTTAAGTGACAGGCATTGGGGTAATTGCGGTGTGTGCACCCCGCGTAAGCGGGGATGATCCATAAATCAAGCAACTCCCCGGGTGTGCCACCAAGTGCACCCCGCGTAAGCGGGGATGATCCCTCTGTCACATAATCGGCAAAAAAGCCGGTCATGTGCACCCCGCGTAAGCGGGGATGATCCGGCGACAGCTGTCGAAATCCGAATCAACGGGGCGTGCACCCCGCGTAAGCGGGGATG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACCCCGCGTAAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1175616-1173264 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE340297.1 Propionibacterium sp. oral taxon 192 str. F0372 acKdT-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1175615 29 89.7 33 ..........................AGA TGTCGCGGCCAATGTGGTCTGTGCCGAACCAGT 1175553 29 96.6 32 ............................A TGGAACCGACTTTTGAGGTCAACCTAGCACGT 1175492 29 93.1 32 ...........................TC AGATGACCCGGTGAACGGCCCGGGCAATGAGT 1175431 29 93.1 32 ..........................GT. AACCCTGCCACGCCAGCATCGGGGCAACCAGT 1175370 29 93.1 32 ..........................TT. TGTGGCCCACCGGAACCACCGTCGCTGGTGGT 1175309 29 93.1 32 ..........................GT. GCTCCGCAGGGGCCGAACCAGCGGGAACGCGT 1175248 29 100.0 32 ............................. TTGACCATGGCATAGATCACGATGACGATGGT 1175187 29 96.6 31 ............................T CCGTGCTGGCTGCGGGTGCCAAATTGATCGT G [1175161] 1175126 29 89.7 33 ..........................TAT CGGGGACCAACTCCTCGGCATACATCTTGGGGT 1175064 29 93.1 32 ...........................TC TGGTTCTGATTCAACCCATTTAGGTTCACCGT 1175003 29 96.6 32 ............................T TACAGTTTCTTCGTGTGCTCCAATTAAAGCAT 1174942 29 96.6 32 ............................T ACGCAATGCCGATTTTGCTTCTGCTTCGGTTG 1174881 29 100.0 33 ............................. GAGCTGATCTCGTCAGGATTAGTCGTATCAATG 1174819 29 100.0 32 ............................. GCATGACAACCAACATGGCAACAAGAAATATA 1174758 29 96.6 32 ............................T AACACTTGAATCGATATAATACAATCCGGCGC 1174697 29 100.0 33 ............................. CTCATCGATTATCTGATCCACCGCGCCGATCCA 1174635 29 100.0 33 ............................. GCGGTGCGTGACGCCCTGTGGGATTTTGTTTGT 1174573 29 96.6 32 ............................T TCCTCCGTTTGGCGCTGTGCGGTACATGGTAG 1174512 29 96.6 32 ............................C TTGACAAAAGGCAGATTGTGTGCGTGCAAGAT 1174451 29 100.0 32 ............................. GGAGATGTCTACGCAATCCTTGCCGCGCTCAA 1174390 29 100.0 31 ............................. GTTTTTCCCGGCCCACGATCTCTGAGTAAAA 1174330 29 96.6 32 ............................T CCTCCTCTTCGCGCAAAAACGGCTTCTCGACA 1174269 29 100.0 32 ............................. GCGCGCGAACAAAAGATCAAGCAACTCGCCAG 1174208 29 96.6 32 ............................C CGATTCCTCGATAAAATCGGGCTCGGGGCATA 1174147 29 96.6 32 ............................C GATGGGTCACGTGAGGAGCCCGGCGTGTGGGG 1174086 29 96.6 32 ............................C ATGGCGTCCACCACGTCAGATGATATGCTATT 1174025 29 96.6 32 ............................A ACCACGTCAACCATACGCGTTACCGCAACAGC 1173964 29 96.6 32 ............................T GCGCGTCGAATCATGTCATGATTGACGGTGAC 1173903 29 96.6 33 ............................C GCCCATTTGCTGCTGTAGTCGCATACTGTCGCG 1173841 29 100.0 32 ............................. TCGTACACACCAAAATAGACAGAGTAATTCGA 1173780 29 96.6 32 ............................T ATTTTGGTTTCACCATTCGCGAGTGATCGAAA 1173719 29 96.6 32 ............................C TATTGCGCGCCGGGACGCAATTAACGGATTGG 1173658 29 96.6 32 ............................C TTGGGTGGGCTCAAATACAGGGTCCGCCGGAA 1173597 29 96.6 32 ............................T TAATGCTCGAATTGTGGAAAGGGCGATAATGA 1173536 29 96.6 32 ............................C TATTGCGCGCCGGGACGCAATTAACGGATTGG 1173475 29 100.0 32 ............................. ATTTTCACTTCCCCGTCGGCGAGCGACCGGAA 1173414 29 96.6 32 ............................C AATCAGGTACTGTCCCATGGCGGCCCAGGGAA 1173353 29 100.0 32 ............................. ACAGGATGTGTGCGTGCAAGATCAATATAGCA 1173292 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 39 29 96.8 32 GTGCACCCCGCGTAAGCGGGGATGATCCG # Left flank : TAATCAGCGGGGGAACGAACCACGCTTCGCCCTTTGACGAACCCGAGGATGCTGAGCCGCCATGGTAGTCATGATTCTCTCAGCGGCACCCGCCGCTCTACGAGGTGCCTTGACCCGCTGGCTGCTTGAAGTGGACCCCGGCGTATATGTCGGCCACCTGTCTGCGCGAGTGCGGGACCAACTGTGGGAACTGGTGCGCTCCAGTATCGGAAGCGGTCGGGCACTGCTCATCTACTCAAACCGTTCAGAACAACGCTTCGCAATCGAGTCGTTCGGCCACGAGAAGATCCCCACAGACATGGATGGTTGTCTCGTCATGACAACGCCCTATGAACGCGGAGAGACAGAGACAACGCGTCTTCCGGGTTCAGTCAAAGCCCCCAAGGAGGCTTGGTCCATCGCTGCTCGTCGGCGTCGGTATCGCAACTCGGCAGAACGGAATCTAGGTCGGCATTGAATGAAAACGCTCCCCTCTTGAGATATACTCCCTAGTGAACTGT # Right flank : CAATCTGGACGGATTTTTGGATGGGATATGTTGTGCACCCCGCGTAAGCGGGGATGATCCTTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGTTGTGCACCCCGCGTAAGCGGGGATGATCCTTGACGCGCAGATTCCAATTTTCCCATACAGAAGTGCACCCCGCGTAAGCGGGGATGATCCTGTGCGCTGGCCAGCGGTATCAGCCGGAGTGCCGTGCACCCCGCGTAAGCGGGGATGATCCGTTAGCAACAGAATCAAAAGCCAAAATCCGACGGTGCACCCCGCGTAAGCGGGGATGATCCCTCGACAGGATTCGACAATCGCCGACCGAGCAGGTGCACCCCGCGTAAGCGGG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACCCCGCGTAAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //