Array 1 1413-118 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXZZ01000032.1 Veillonella atypica strain KHUD_V1 NODE_13_length_76321_cov_528.994439, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 1412 36 100.0 30 .................................... TATTTTGCAAGATATTTAGATATTCCATGT 1346 36 100.0 30 .................................... TTTGTTTCGTGCTATGGATCTGATTAATCA 1280 36 100.0 30 .................................... GCTCGTTGTTATGTTAGTATCTTCCCGCAA 1214 36 100.0 30 .................................... TACTCCATTTTCATACACCAAAGCGTTGTA 1148 36 100.0 30 .................................... AAACTCTATTTGCGCCAAGCCATTTTGATA 1082 36 100.0 30 .................................... GATATGGAGGCTTTAACCGATTATAAGGAA 1016 36 100.0 30 .................................... TGCAACATTAGTTGATAATTCCAAAGCAAC 950 36 100.0 30 .................................... TTTGTTTCGTGCTATGGATCTGATTAATCA 884 36 100.0 30 .................................... GCTCGTTGTTATGTTAGTATCTTCCCGCAA 818 36 100.0 30 .................................... TACTCCATTTTCATACACCAAAGCGTTGTA 752 36 100.0 30 .................................... AAACTCTATTTGCGCCAAGCTATTTTGATA 686 36 100.0 30 .................................... TTCCATGATGCGCTGGCGTGGTCCTTGAAT 620 36 100.0 30 .................................... TCATATTTCCTCCTTTAACGAATATAACCG 554 36 100.0 30 .................................... ATACTAAAATCACGGCTATCAGGCCCTTTA 488 36 100.0 35 .................................... GCATCTTTGTTTCTTTTAACGTAACGCCTATTGTT 417 36 100.0 30 .................................... AACGTATAGCTGATGAGTTGAGTAAGAACG 351 36 100.0 30 .................................... AAATAGTTCATCTGTAAATTGTTTGTTATT 285 36 100.0 30 .................................... GTTCATCTTGCCTTTAAGAGCGTTTTCGGT 219 36 100.0 30 .................................... CTCTGTCTGTCTTGTAAATAATAACGGCAA 153 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 20 36 100.0 30 GTTTGAGAGTAGTGTAATTCTGCAAATCTCTAAAAC # Left flank : AACTAAATTACAAAATCAACTGACAAAAGAGGCCTTATTAATGACTGAAGAGGTAGCTGATATTGTTAATCGACTTCATGCATTTTATTATTCCTTAGAATTTGGATATCCTTTATCAATTCAACATAAAATGGAAATGGGTGCTGCTGAGATTATTAAATTAGGTAGCTTTAATTTCGAGTTTAATCGTAAAGGAGATGTCATGGATCTTATGTCTTATATAGAGGTGGTAGACACATTATTATCTCCTATGATATTTATTATGATAAATTTAGATTTAGTATTAAATGATGATGAAATTAATGCATTTTACCAAAATATGTTAAGCCGACAATTACGATTAGTTTGTTTCACAACAGGATCTTTTAATAGAGAAGCCCTTGATAAAAGTCTTATTAATAGGTATATTTTAGATAATGATTTTTGTATTATTTAAAGAGAATATAGAATTACACCTGGTGGTAGCCCGAGTTACTCTTAAGCTTCAAATTTAATTTGGG # Right flank : CCTATATCTTGCACATCATACACGTAGTCAAGTTTGAGAATAGTGTAAATGATACTCTAAGAATGTACAAAAATGATGATATAAGAATGTACAATTTTAATTGTATCACCGATACTAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAATTCTGCAAATCTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 392-2080 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXZZ01000007.1 Veillonella atypica strain KHUD_V1 NODE_3_length_175223_cov_522.164029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 392 36 94.4 30 A...A............................... GAAACGGAAGAAGAAATTCAAGTAATTCAA AC [395] 460 36 100.0 31 .................................... AGGCAATCAAGAAGGTATGTAAAGAAAATGA 527 36 100.0 30 .................................... CTCACCGGACACCCTACGAATCACTTGCTA 593 36 100.0 30 .................................... TTAAGGCTATATCTTCAATCATGTAAAAGT 659 36 100.0 30 .................................... AGTTCACTTTCACGAGCCATCAATCGACGT 725 36 100.0 30 .................................... GTCAGTAGTTGCAATAGTATCAGATACTAC 791 36 100.0 30 .................................... CTTTATAACTTCCCTTACCTTTGTCTTTAT 857 36 100.0 30 .................................... AGTACTGCTCAACTAGATGGCATAAGCGCG 923 36 100.0 30 .................................... AGAACTTAAATTGTTCCTCAGCTACAGTAA 989 36 100.0 30 .................................... TATTAGACCGTGGCCAAACATTAGGTAAGA 1055 36 100.0 30 .................................... GTATGAAACAGCATAAGCGGAACCCTCAGC 1121 36 100.0 30 .................................... TCTGAAATAACTACATGATCATTGTTGCCA 1187 36 100.0 30 .................................... AAACACTTGCGCCGCACTAGGTTGGTTCGT 1253 36 100.0 30 .................................... CATCAGTGTTATCGTGTTCCTGAAGTTTCT 1319 36 100.0 30 .................................... AATTAAAATCGATGAAAACGCTGACTTCCC 1385 36 97.2 30 ......................T............. TTGCGAACATCAAAGAGTTGTTTCTTGGAA 1451 36 94.4 30 ...................T..T............. GTGAGCTTTTTCTAGCATTTCTGCTCTAGC 1517 36 97.2 30 ......................T............. GACGGTGTATTACTACTAACTGGTGCCGTA 1583 36 97.2 30 ......................T............. CCTGTGTGATGTATGTTTGGCATAATCCGT 1649 36 97.2 30 ......................T............. AATATAGGCTAGCTGTTCTTCAAAGGTATC 1715 36 94.4 30 ......................T......T...... GTACTTTTGAGCGCTAGTAAATCCACCTTT 1781 36 97.2 30 ......................T............. GGTGCTTGAACGCTTGCTTTAGGCAATGTG 1847 36 97.2 30 .............A...................... AAGGAACTGAGTTCTTATGCTCAATATCTT 1913 36 97.2 30 .............................T...... ATAACAGCTTAACACTTCGATAGGTTGGCC 1979 36 97.2 30 ......................T............. ATCAGGTCCTTTACGTACTGGATAGGGTCT 2045 36 97.2 0 ......................T............. | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 98.4 30 GTTTGAGAGTAGTGTAATTCTGCAAATCTCTAAAAC # Left flank : ATTAAATGCCATGATTTAATTCAAAACCTTAAGAGTGCAAAAGATGAAGGACGATTAGAAACTCGGCTCAAGCATTACGCACGCTACCAATTACTCATCATTGATGAAATTGGCTATTTACCGTTACAACCAGGTGATGCTAACTTACTATTTCAAATTATTGATAGACGATACGAAAAGAAAAGTACCATCGTAACGTCTAACATTAATTTTGATGAGTGGGCTACCATTTTACATGATGAGCGAGTAGCTAATGCTATTGTTGATCGATTACTTCACCATGCACATGTGATTAGCATAACTGGAGATTCATACCGGTTACGAAACCATATGCAACAGAAGGAATAACTGTACATTGTACATCGTCAAAATTGTACATTCTTATATTGACA # Right flank : CTACCGCAATGATGATATAAGATTGTACAAAAGTAGCATTACTATACATAATATAGGGCACCTAGCATATGCCATCTGTGTCTATACGTTAGTAATGCTACTTTTATTCTGATATTGAATTTATTCTGTTAAATATTTTATTACTTTAATTTCGTTAGATATGCATTTAGCATGTCTAATCGCTCAGCAAATAATGTTTTCATCATAGTAAGACGATCTTCCGTAATATTTGAATTTTTTGTATATATGGAATCCATCAATTCCATTGCTGTTTTAGACAATGACTGCTGAATTGTTAGTGGTGTTGTTACATACTTTATTTGCTTATCATGTTTCGATTTAAACGGTAATGATGGATACGTATGGAATGGTCTATGTGGATTAATCGTCATTTCGTTGTACCATAGGGTATTGCCATTATCGAAGATGGGGGCCATGCCAAGGAATTCAAGTGTTGTAGAATTCCGTAAGAATCCAAAGTTACCGTAGTGACGGTCGTC # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAATTCTGCAAATCTCTAAAAC # Alternate repeat : GTTTGAGAGTAGTGTAATTCTGTAAATCTCTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //