Array 1 154462-151946 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027570.1 Megasphaera elsdenii DSM 20460 strain ATCC 25940 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================= ================== 154461 23 100.0 50 ....................... TTGTGACATAATCACGTTGACGTTCTACTAACATGTCTGATAAGAACCAT 154388 23 100.0 52 ....................... TCACCGGCGATTCTAACGGCGTCTTCCGGGCTTTGCGCTTGATAAGAACCAT 154313 23 100.0 48 ....................... AGGCCCCTTCTTTATCTAGTTTGCTTTTTGCATTTTGATAAGAACCAT 154242 23 100.0 48 ....................... ATGAGACAAGCCAACTAAGAAAGAGAGGTAATTTACGATAAGAACCAT 154171 23 100.0 50 ....................... ATACTTGCATAGGAAACATTAATTCCATAGCGACAATAGATAAGAACCAT 154098 23 100.0 51 ....................... GACAAAATCGACGCCTACGAAGCGTTAGCCATACAGCCAGATAAGAACCAT 154024 23 100.0 53 ....................... TGAAAATTACTCTTAGTGCTATGATGCGGCGTTCCCTCACTGATAAGAACCAT 153948 23 100.0 49 ....................... TGTCACCGCTGTAGTAAGTTACAAGGTGGTCGATAATGATAAGAACCAT 153876 23 100.0 52 ....................... CCTCCCTTGATAATGACATAGTGCCTGTTAGGGAAAGCCTGATAAGAACCAT 153801 23 100.0 51 ....................... TTCTCTGTAGCTACTTCTTTTTGTTGACTACATGTTACCGATAAGAACCAT 153727 23 100.0 51 ....................... TAAAACTAAAAGCACATAACTTGCAAACGCGACGCCTAAGATAAGAACCAT 153653 23 100.0 52 ....................... TTCCTCAGCATAAAACGCTGCTAATTCATCGGCGATTTGAGATAAGAACCAT 153578 23 100.0 51 ....................... GTCGCAAGAACATAAGCAACCGCAACAATCATAATAGAAGATAAGAACCAT 153504 23 100.0 50 ....................... AGCTTGAGAAGCCCCATAGCTTCACATTCATGAAATTCGATAAGAACCAT 153431 23 100.0 53 ....................... ACGTTCTACGCGTTCTTTCAAAACGGGGAAGTTATCAATTTGATAAGAACCAT 153355 23 100.0 48 ....................... TTCAATATCGTCACGGTATTCTGGCTTGCTCTGTTTGATAAGAACCAT 153284 23 100.0 51 ....................... TAGCTTAATAGCTTTGTGTTCGTAAATCTTCATTGTCTTGATAAGAACCAT 153210 23 100.0 49 ....................... AACAACCATACCCGACCGTTTGGAGACGCTTCTAACCGATAAGAACCAT 153138 23 100.0 51 ....................... TACGTTTCTGCTAGGTGGTTCATAATACCTTGACCTACAGATAAGAACCAT 153064 23 100.0 49 ....................... ATTTTGGTATCCCTAAGGACTCTTGCATCTTTTTTGCGATAAGAACCAT 152992 23 100.0 49 ....................... ATCTCACGAAGTCTATCCATAATAGCAGATTTATTACGATAAGAACCAT 152920 23 100.0 50 ....................... TTTCTTCTACTTTGTTTTGGTCAACTTCATTGACCGTCGATAAGAACCAT 152847 23 100.0 50 ....................... ATAATACGCGTTCGTTTGAACCTTTTTTTCTTCTTTTAGATAAGAACCAT 152774 23 100.0 48 ....................... CTAATCATCCATTTCGTCTATGATGTAGGCTGTTTTGATAAGAACCAT 152703 23 100.0 50 ....................... TACCTGCCTAAAATCTATATTCAGTTGTCAAAGAACATGATAAGAACCAT 152630 23 100.0 50 ....................... TTAGAGGTTCAAGGATTCAAACGGGAAGATGATGAATTGATAAGAACCAT 152557 23 100.0 49 ....................... TTTCGAGACTTTCTGCTTCATCGGAAAGTTCTTGCCAGATAAGAACCAT 152485 22 95.7 49 ...........-........... CAACCTGCCTACTGATGAGACAAGCCGCAACGAAAAGGATAAGAACCAT 152414 23 100.0 47 ....................... ATCAGACCAGATGAGATTATGCGGCCATTCAAATTGATAAGAACCAT 152344 23 100.0 55 ....................... TTCATGCCTGCTTACCCATGTATGAACACCATGGGAGTAAGTTGATAAGAACCAT 152266 23 100.0 53 ....................... GTGTCAAGATTGACTTTACGTAAAGTCTGCTGTTCTACAATGATAAGAACCAT 152190 23 100.0 50 ....................... TTCTTGTTCAAGCTTTAACTGTTCTTGCATCGTTCCCTGATAAGAACCAT 152117 23 100.0 51 ....................... ATCTGCTGGCTTGTCGTGGTCAATCAAGTTGACAGAGGAGATAAGAACCAT 152043 23 100.0 51 ....................... CTGGCGGTGTAGAGCTTACGGGTCTGTGAAGACCTTGCGGATAAGAACCAT 151969 23 91.3 0 .............A........A | T [151948] ========== ====== ====== ====== ======================= ======================================================= ================== 35 23 99.6 50 AATCCCCGTAAGGGGACGGAAAC # Left flank : TTCCCCTGTGAATCGCCAACGCATGGCTTATAAGCGATTGAATCAATGGATTGGAGAATCATTGTTGATAAACCTGTGATTACTGCATTATGATCATGTGCCGTTTGTCATACATTCCGGCTATGCCTAGAATTCGTGCGGGACGCCCTTTGGGCTAGGCGTCCCCTACGAAATCGCATATAGGCGATGGAAAGGAACTCAGACCGCAGCCCATACTTGTCTAATGGCAGATCTTTACGAATCATGAACTATAGTTTTTGATAGACTTATGATATAATATAAATTAGTTAGGTAATACCGTATTTATGCGCCCAACTTGCTTTTTGAAAACATAAAAAGAATCATTCCGCCCCGCTGGCTTAAAAATCAGCGATAGGACGATTTTTGAAAATCATTTTCCACAAAAATGTGAAAAATGAGGAGAAAAGAAAATCCGCCCCGCAAAAGGCATTTTTGATGGCTCTATGAAGCCATTTATAAGGGGTGCGGATAAGAACCAT # Right flank : AAAAGCAGTCTAATTTTCGTGTTTTCCTTTTTTGTGGAAAACTTTGATAAATTAGGCTGCTTTAGGCAGATAATGTATAAAAAAAGAAGCTGTCGTATTTGAGCTGTGAGCTGACCCCCAATAGTTAGATGTTAGGTCTAACAATTGGGGGTTACATCAACTTCTGACCGTCAGCCCCCATAAGAACTCACAGGTCATCAATGAAGTCGGCCTGGACATCGAAGACCAATACGGCTACGCTTATTTGCCGACGGATTTCAAGAAAAACAACGGCTTCCTTACATCGACGAAAATGACCGAAGCCTACCACCTCTACCGCCAGCCCTATTGCGGTTGCATTTTCGGTGCCCGCGACCAGGGCCTGGATTTGGGAAAAATTCGCCAAGATGCAGAAGCCTTTTTGGCCCAACAGGAATCGACCGTAGGGGGATAATTAGCTGGAGGAAGATAAAAAGAACTGACGCAAGCTTAGGTAGAATCCGGCTATTCATACAAAAGGA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 164493-164175 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027570.1 Megasphaera elsdenii DSM 20460 strain ATCC 25940 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =================================================== ================== 164492 23 100.0 51 ....................... TATAATGAAGGTTTGATCATGACGACAGCTTGTATTGCTGATAAGAACCAT 164418 23 100.0 51 ....................... ATCATCTTTAAAACATATAACTTTTTCATGATAAACTCCGATAAGAACCAT 164344 23 100.0 50 ....................... TTAGGCGGAGAGCCATTGTGTAATGACAATGTCTCTATGATAAGAACCAT 164271 23 100.0 51 ....................... CATGGTACGCGGTTAGCACTCAACAAGCGCCACTTGCTGGATAAGAACCAT 164197 23 82.6 0 ..................T.TCT | ========== ====== ====== ====== ======================= =================================================== ================== 5 23 96.5 51 AATCCCCGTAAGGGGACGGAAAC # Left flank : CATGTTGACGAAATGCCTCAGGGAACTGGAACAGGACAAGTTCATCACAAGGAAGCAGTACAGTACGATACCGCCAACGGTTGAGTATTCACTAGCAGAACGGGGAAAGACATTGATCCCGGCACTGGAGTCGGTATATCAATGGGCTGATGATCAAATGAAGAAAGAAAACAAAATTCAAACATCTGACAGTCTCTCATAAACAACACAGCCCATGCTTGTCTAATAGCAGATCTTTACGAATCATGAACTATGGTTTTTGATGGACTTGTGATATAATATAAGTTAGTTAGGTAATACCGTATTTATGCGCCCAACTTGCTTTTTGAAAACATAAAAAGAATCATTCCGCCCCGCTGGCTTAAAAATCAGCGATAGGACGATTTTTGAAAATCATTTTCCGCAAAAATGTGAAAAATGAGGAGAAAAAAATCCGCCCCGCAAAAGGTATTTTCGATGGCGCTATGAAGCCATTTATAAGGGGTGCGGATAAGAACCAT # Right flank : ATTTGAGAGGTGATGTGAAATGAGCTTTGCTTATATTACGGAAAAAGGCGCTACGATTTCTAAAAAGGACGGACGCTTTGTTGTTGGACGAAATCATGAAACCTTGTTGGAGATTCCAGAAGAAACATTGGAAGGCTTATTAGTAACGGATACGGTCCAGCTTACATCACATGCCATAGTGTCTTTATTACATTTGGGAATTCCCGTTACATGGCTTTCTTCCCACGGTAAGTATTTTGGCCGATTAGAATCGACAAGACATGTTAGTGTATTTAAGCAAAAGCAGCAATTTCTATTGCAGGACCAGCCTTTTTCTTTGGAAATGAGTCGCCGCGTCTTATTAGCTAAAGTCCATAATCAGTTGACCTTATTGCGTCGATACAATCGGGACCGGAAAATACCGTCAGTCATGATAGATATTCATAATATGATGACTATGGCTGATCACTTAAAAATAGCAGAAGATTGTGAATCCTTGATGGGGTATGAAGGGATGGCTG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.37, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1937904-1941599 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027570.1 Megasphaera elsdenii DSM 20460 strain ATCC 25940 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1937904 32 100.0 36 ................................ TAAAGTTGTCTTGATTCTTAGTTTATCATGGATAGG 1937972 32 100.0 36 ................................ TATACATCAGGAGGCTCTAAATTAAATGAAACGAGC 1938040 32 100.0 34 ................................ CTGAATGGGACCTGGAAAAATGCGTCCAGTGTAC 1938106 32 100.0 35 ................................ AATGAAACCGATGAAACGGTCAACAAGAAGACCAA 1938173 32 100.0 37 ................................ GGCATGGACACGCTGACGGCGGACGGACCGGCCAAGC 1938242 32 100.0 35 ................................ AATGAAACCGATGAAACGGTCAACAAGAAGACCAA 1938309 32 100.0 35 ................................ CCGGCAGAACATCTCCTGACCAACGACGATATGGA 1938376 32 100.0 35 ................................ ACCTTCCTCAGCAAGGAAGAAATCGACGCCCTGGC 1938443 32 100.0 37 ................................ ATCGGCTGGATCACGGGCATCGAAGGGGTCTACTTCC 1938512 32 100.0 34 ................................ TTATAATTACAACGCAGAGGAGTAAGGTGACCAC 1938578 32 100.0 35 ................................ CTCATGGCTTGCGACAAGGCCCTCGTTGAACCGTC 1938645 32 100.0 36 ................................ TTTGAGCCAGAAAGATTATGCGTCGGGACAAATGGG 1938713 32 100.0 37 ................................ GGCTTATGCCTGTGCCCGCGGTGCTGACCGCATGAGC 1938782 32 100.0 36 ................................ TGATCAAGGCCGCCGCGATTTGCAGGCCTGGTGGAC 1938850 32 100.0 35 ................................ ATATAGAACATCCTGAAAGAGATACTTTGGTCATC 1938917 32 100.0 38 ................................ GTGTATTAGTTAACGGTGCCGATGGCCGCATGGGCAGC 1938987 32 100.0 36 ................................ CAGCAGCAGCTGGGCGTCTTGCAGGACCGGCCGGAC 1939055 32 100.0 34 ................................ CCGGAAGTCGTCTACTGTGCCGGCAAGACCGTCC 1939121 32 100.0 36 ................................ ATCATCATGGCGACAATCGGCGTCCTCGTCGTCCTC 1939189 32 100.0 36 ................................ TCGCCTGCAGACTGAAGGACGGGGCCATCTGCGCCG 1939257 32 100.0 37 ................................ TGCATGTGTCCCGGTGGCGTCGTCGTCGGGGCGGCTT 1939326 32 100.0 36 ................................ TCGATTTCAATCATACGGGGATGAGCATCGTCGAAA 1939394 32 100.0 35 ................................ GCATGATACGCTGGAAACGTATACGGCTGTCAGTG 1939461 32 100.0 36 ................................ CAAGACAGGCGTCATCTTCAAGGCCGCTATCGATAC 1939529 32 100.0 34 ................................ ATTTTCCTTGTGGACGGCTTCGGCTGTTTCCTGC 1939595 32 100.0 35 ................................ AGTAAAAAAGAAATCCGGTCAAATTTTGTTTACGG 1939662 32 100.0 36 ................................ CCGATGCCATCTGCTTCGTCTCGGAAAAGGGGCGGG 1939730 32 100.0 36 ................................ TATATACGCGTAAAACGTATAACCAAAGCTATATCA 1939798 32 100.0 33 ................................ CCAGAAGGCAGCCGCCGAAGGGAGGTCAGTCCA 1939863 32 100.0 36 ................................ CTGTCGATGAATTGATCAAAACGTTGGAAAAGCTGT 1939931 32 100.0 36 ................................ GACACGGCGCACGGATACGCCGGCCAGGTACATCTC 1939999 32 100.0 38 ................................ TGGCCATCGCTCTGAGCCTGCTGTGCACCGGCCTGGGC 1940069 32 100.0 36 ................................ ATGCGACACCACAAGACGCCGGCAGTGGCACGGGAA 1940137 32 100.0 35 ................................ GGTAATGTCGCAGCGCTGGTCAAGTACGCGCTTGA 1940204 32 100.0 34 ................................ TTACAAAGAAGCGCTGAAAGACGCTCGTAAGCAA 1940270 32 100.0 36 ................................ GTGGAATAGCTATTACGGTTTCCCCCAGCAGTCGTG 1940338 32 100.0 36 ................................ TTGCGTGGCTTGACTACATGGACGAGGACGAAAAAC 1940406 32 100.0 38 ................................ GGACATACGGAGCCAATATTCGTCCTGGTGATTACTGC 1940476 32 100.0 36 ................................ GAACGTCTCCGCAGGCTGAATGACCCGAAACTTACT 1940544 32 100.0 36 ................................ CAGCTTAGCATAATGCCAATCGTCCAGCACGTGCTT 1940612 32 100.0 36 ................................ AGAACGAAGTGCAAAACCCTGGCCGATTACATTAAC 1940680 32 100.0 36 ................................ GCTGTATCAACGAAGAACTGGATATCTTCCGCTGTC 1940748 32 100.0 36 ................................ AACGCAAACTTCGAAATTAATTGCTTGAAGAAATAC 1940816 32 100.0 35 ................................ GTTTTTGCAATATACGTCGCTATCCCTCCTCGTCA 1940883 32 100.0 37 ................................ GTGAGGTGGCTAGTCAATCCGCTGATTTTCCCGGCGC 1940952 32 100.0 35 ................................ GTGGATTCAAAAAGCAACTAATATCGACACTAAGC 1941019 32 100.0 37 ................................ ACTTACATGGATATGATAAATACATTGATGAAGAAGC 1941088 32 100.0 37 ................................ TTTGTAGCTTAAAATTATAGTCAACTAGAATAGAGGC 1941157 32 100.0 37 ................................ TTCTATTATTATCTCTTTTATCTCTTTACTCTTATGC 1941226 32 100.0 38 ................................ AAGTAGGATGCGGAACCGTTCGTCTGAGATTGTGGAGC 1941296 32 100.0 36 ................................ CGCAGCAGGTTATCCGGCTGATTGTATCGCCGTCAG 1941364 32 100.0 36 ................................ TTGTATCAAGATGAAAAGAAGGTGGACTAATTATGC 1941432 32 100.0 37 ................................ ATCGCCCCCATTTTGGATTGTCAGCTCATAAGTCAAA 1941501 32 100.0 35 ................................ AATGAAGCTGTCTAAGAGCTGCTGGCCGGCCTTCT 1941568 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 55 32 100.0 36 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : AGACGGCTATGTATCAGCCAACCTGGCACGGAAAGTGACCGGTTTCAGTGAAGACGATTTACAGTATTTATGGAAAGCCATCATTAATATGTTCGAATACGACCATTCCGCTGCCAGAGGGAATATGGCTGTGCGCGAACTCATCGTATTCAAACACGATAGTGAATTGGGAAATGCTCCAGCATATAAACTTTTTGATACTGTTCACGTCCAGAAAAAAGAAGGCGTCGTCGCGCCCAGAAACTATACGGACTATGACGTAACCGTAGATGAAAGCAAAATCCCGGAACACGTTACGTGTACCCGGATGATTTAAACGTAGGAAAGAGGGGGTGCGAAGCCGTATCACACATAAAATATATCAGAGCTTCGCACCCGGCTTGATTTCTATAAAAATAAGCAATACCCGGAGAATTGACTCAAAAATTGAACTGCTATTCAATCAGTTCGCAATATGATTGATGAGAGAGCAGATAGTGACTGAGCCAATTTGCAGGCTC # Right flank : TAAAATGCATCGCTCCTCAGGAACGTTCAGCGGGAAACGAGTCCGGCGCGGCCTGTACCGTTTCGCCGACGGCAGGATGGCTAATGCCGACATCAACGGCGCCGCCAACATACTCCGCAAAAGTAAGCAGAACCTCGATTTCGAGGGACTGTGTAAGGGGCTTTTGGACAGCCCTTTGAGAATAAGGCTATCCTGATTTCAGGAGGAAACTTAAACAGCAACCTTCTCAAGAATCTCTCGCTTCTATAAGCGGGAGAGGTTCAAAGGCAGTATTTCAAATCTTCAAATCCGATTCTGCATAGAGTGCCGCATAGCCAGCCAGGGCGATGCGGCCTTTTTCTATGTGGCAATAGAGTTCGCCGCCCCGTTTCGAGGCCTGGTAGGCGACGAGGTCGGTTTTGTCGAGTTTGGCTGCCATGACGGGGATGATGTGGCAATGGCCGCTGCCGCAGACCGGGTCTTCCGGGACGGCGAGTTTCGGCGCAAAGGACCGGCTGACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2183298-2184107 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027570.1 Megasphaera elsdenii DSM 20460 strain ATCC 25940 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2183298 28 100.0 32 ............................ ATCATCATGTCCCGAATGGCCATACAACATGG 2183358 28 100.0 32 ............................ AGCCGCAAAACGCGCCCACAACGGCAAATAGC 2183418 28 100.0 32 ............................ TCTTTGATGCAGCGGATCAGTCCTCTTTCATC 2183478 28 100.0 32 ............................ ATTACGCTCACCGCCTAAGCAAAGCACGTATC 2183538 28 100.0 32 ............................ GACTTTTCGGCGACATTCTTTCGGACATTCTT 2183598 28 100.0 32 ............................ TTCTGATGGCACCCCTTGCGGTGCAGACGAAC 2183658 28 100.0 33 ............................ ATGTAGTACAAAGGAAAACTTAAGAGAAAACAT 2183719 28 100.0 32 ............................ AGCCGGTGTCACCACATAGTGGATGCGGCGCC 2183779 28 100.0 32 ............................ TTATTGGGTGCGAAGCCTCGCGGTGTACGCCT 2183839 28 100.0 32 ............................ ATAGGCAAAATCCCAGCCCGGTACATCGACAT 2183899 28 100.0 32 ............................ ATTATTCGAGCCGCCGCCGACAGCGATACGGA 2183959 28 100.0 32 ............................ CATAACTGTATCGGTTGGTTTGTCTGTTAATC 2184019 28 100.0 32 ............................ TATACCATGCTGAAAGCGTGGAATACAGGCCA 2184079 28 92.9 0 .........................T.T | A [2184100] ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.5 32 GGTATCTGCCGAGTAGGCAGTTTAGAAA # Left flank : GTACGTTGAAGTGGTTCTGGTAACCGGATGTCATGCTGTCGTGGTTGCCGATGCTGCTGGCTTCGGGCAGATTGCGCAGGGCTGCGGCCGAAAGGTAAGCGGCATACTGGATTTCCTGTTCGTTCAGCTTGGTTGCCGACTGGTCTTCCGCCGGCTGGTTGATTTGGTCGCCAGGAGAGACGAGGAAGTTGATTTCCGGATGCTGCGCGAGGGCGCTATTAAGGGTCTTGTTCCAGTTAGTCTAGGCGCCGTTTGTAAGAAAAAAGAACGAAAAAATGTCAAAAAGATGTAAAGAAATTACTGAAAAAGCTGCGGCACAAAATCTGGAATCATGTAATGATTAATAGTCACTGCAACCTGCATAAATTTTACCAAAAAAATAAGATGTTTTTCAGATGCAGGAAACATGCGGCCTTATAAGGCTATTTTGATTTTTGGGGAATTTTGTTTATAAGCGTTGCAGTTAGGTAGCGACGCGGTTCAACGTATGATATAATACT # Right flank : TATATTCCTTTAAAAGATAAATAATATTGAATGGGAATTTCAAATGTGGTATAATGAGAATAATTAATTCGGTATTTAATATAAGGAGGCATTTTCTGTGGGAATATTTATGGATTATGTCGTAGAAAATTCAGCGAAGAAAAAGAAAACACATAATGCTTGGCTGCAAAGTGTGGTTGATCGTATTCCTTCTTGTACCTTGTCGACGCATGTCGGTAAATTTACGAATCCTGAAGTAAAAGTAAATATTCTTGATAGAGGACAGGGAACAAATAGGGAATATGTGAGTACCGATACGGTGACACATGATATTGATATCGTTGTTTCTTCGGCAGCTTATTTAAGTACGGCGAGTTTATTGATGCTGCCTTTAGAAGATAGACAGTTGGTGCTTCTTCATCTCAAGCAGCGTGATTTAGCATTAAAAAAAGATTTCACTTCTCTCGGTATTGATTATGAAAAAGTTTGCACAGATGTTGATGGACTTTTTCAAGCCGCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTATCTGCCGAGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTATCCGCCGAGTAGGCGGTTTAGAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 2187990-2189637 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027570.1 Megasphaera elsdenii DSM 20460 strain ATCC 25940 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2187990 28 100.0 32 ............................ TGTTATTGCCGATTATTCCGCAAATGGGCAAC 2188050 28 100.0 32 ............................ AATCCAAGATTCCGTTGCGGTATATTCTGAAC 2188110 28 100.0 33 ............................ AAATACGTTGTTGATGTCGCATCACTGCATAGC 2188171 28 100.0 32 ............................ TTTCAAGTACTTCCGACTGGAAATCATGTTCA 2188231 28 100.0 32 ............................ GGTGCAAAGGTCCGCGGGTTCTCGATAGTAGC 2188291 28 100.0 32 ............................ AAAGCCGGTTGATTTCTCGAGCCGTGAAAGGC 2188351 28 100.0 32 ............................ ACAAAGACCGATAAAGTAGTCCAGTAAGGATC 2188411 28 100.0 32 ............................ AGAACCAGGAGAAAAGTGGAAGCACTTCAAAG 2188471 28 100.0 32 ............................ AGATAAATGCCACAATTAGGAGCTTCTAGGCC 2188531 28 100.0 32 ............................ TGCTAAGGGGTACTGGTATATGTTGCTGACTT 2188591 28 100.0 32 ............................ TTAAAGTCGGTGCTTATCACTATGACTACAGC 2188651 28 100.0 32 ............................ TATGGCGGCTGTTACCGTCGGCAGGGGTCCAA 2188711 28 100.0 32 ............................ GCAGGCCGACCCCGTGGCAACGACCGTCAACG 2188771 28 100.0 32 ............................ ATACAACTCATGACTGCCGGCATACAGTGGCT 2188831 28 100.0 32 ............................ AGTTCCGCCACAATGTCCAGATGGCGCATGAA 2188891 28 100.0 32 ............................ ATAAGCGGTTGATTTTCTGCCGGCTGAACGTA 2188951 28 100.0 32 ............................ TCTATCGTCATAGGAATGAATACAGCAAAAAT 2189011 28 100.0 32 ............................ ACGAAAGGACGGCGAAAAGAATTGCTGGACCA 2189071 28 100.0 32 ............................ TGTGAGATGAGAGTCAGCCCGGGGTCTAACAT 2189131 28 100.0 32 ............................ AAAAGGGAAACGGATGGCTGCACCCAAACATT 2189191 28 100.0 32 ............................ AATTCGCAATTAAGCGTGAGATGGCCACGACG 2189251 28 100.0 32 ............................ AGAACTTCAAAGCTTGGCTTTCGTTTGCCATT 2189311 28 100.0 32 ............................ TGCATGATGAGCATGGACTTCATACCGTAACC 2189371 28 100.0 32 ............................ TTCTCAGCTTAGGGAGAAGCAAACGAACCCGA 2189431 28 100.0 32 ............................ TGTCCCATGTCACTAAAGCCATTGTCTGCATA 2189491 28 100.0 32 ............................ TGTACCATGACCGGTGTTCCCTTGAAGACGGC 2189551 28 100.0 32 ............................ ATTTTGTCCGAATATGTTGTAGACAGCTCTTT 2189611 27 92.9 0 ......................G.-... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.7 32 GTTATCTGCCGCACAGGCAGTTTAGAAA # Left flank : CTGACATTCCTCAAGCCTTGCGTTTCTTGCAGGATTACATCCATCTTACGGCGATTCGAGAGGTGGCCGCTCCTCGTATCAAGGGCTATGCCGTATATCGCCGCTATCAACCGGACAGCTCCCGCTTTCGAAAAGCCAAACGTTATGCAAAGAGAAATGGTATATCTTATGAAAAAGCCTTTAAATTGATGAAAACAAAAAAGCCTAGACGACTTCCGTACGTGCAGCTGAAAAGCAAAACGACTCAGCAGAAATTCAGCCTTTTCATTGAAAAAATAGAAGCTCCTGCTTGTGAGGGTAATTTTAACGCCTATGGTCTGAGCCAGCAGGCGACAGTACCGGAATTTTGAGGAAAATCATGTTTGATTGCCCCAAAAATTAATAAGTATCTTAAAATCAAGGAAACAAGCGGATCTTTGCCGTCTCAGAAAATTTTTGGTAAAATGAAAAAGAACGCTTGACAGTAAGTGGCTGTGCGAATTTGCGCATGTTGTCCTACA # Right flank : ATTTACTGTTGGATAGAGGTGGTTGTATGAAACAGCAAGTCGAGACCGCAGCTTTGAAAGCTATTTTACATTCTAAGCGGGCGAATATATATTATTTGGATAAATGCCGGGTCATGCAGAAGGATGGACGGGTTGTCTATTTGACGGAAGGAAAAAAGGAAAATCTTTATTGGAATATCCCTATTGCGAATACAACGGTTATTTTGTTGGGAACCGGCACTTCTATTACGCAGGCGGCGATGCGGCTTTTGGCGAGTGCCGGCGTCCTTGTTGGCTTTTGCGGCGGCGGGGGAACTCCTTTATTTGCAGGCACTGAAGTGGAATGGCTTAATCCGCAGAGTGAATATCGGCCGACAAGCTATGTACAGGGCTGGCTTTCATTTTGGTTTGATGAAGCCCGGCGGTTGGCAGTAGCAAAACACTTTCAACAACAGCGCTGTTCATTTTTGCAGCGCACTTGGGAGAAAGACCGGGAACTTTCCGATTACGGTTTTTATTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCTGCCGCACAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 2373477-2370894 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027570.1 Megasphaera elsdenii DSM 20460 strain ATCC 25940 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2373476 32 100.0 33 ................................ CCGTTCCTTACAGGCTATGCCGCCCTCTGCTAC 2373411 32 100.0 35 ................................ AAAGATACCCAGTATCCCCTGGCGGACATCAACGC 2373344 32 100.0 36 ................................ CGGAAAGCGATATCTTTGAAGACGTCCCGTCGGCCA 2373276 32 100.0 36 ................................ AAAGTTGATGCCGTAGCTGATGGCGCCCAGGCCCAT 2373208 32 100.0 35 ................................ ACTGGATATATCCTTGAAAGGCCAGCTGGTCCTGG 2373141 32 100.0 35 ................................ TCGTCAGCCGCGGCTTGTCTGAGAGCCGGGAAAAG 2373074 32 100.0 36 ................................ CAGGAAGATGCCCTGCGGTTGTTCCGGGCCTGCCGC 2373006 32 100.0 36 ................................ CCGATATGGTGAAGCGGGCCAAGGAGTTGAATATGC 2372938 32 100.0 36 ................................ GATGAGGTCCATCTGGTCGACGTTCATGCCGGTCTT 2372870 32 100.0 34 ................................ CTCAATGGGCAGGGCATCGACGTCGGCCCGCAGG 2372804 32 100.0 33 ................................ AAGCACGTCAGCCCGGCTGGGGCCGCCGTCGCC 2372739 32 100.0 35 ................................ TACAGCGGATATGAGTACGCGGCAGTTGGCGACCC 2372672 32 100.0 36 ................................ ATGCTCTCTGCTGCTTCGACGATGTAATCAAGGGCT 2372604 32 100.0 36 ................................ AAGTTTTGCTAACCACTGCTCATAGACACGAATCTT 2372536 32 100.0 34 ................................ CGGTTCGGGCTGTTTAGTGGTTGCGGTGGCCGGG 2372470 32 100.0 35 ................................ GCATTGACATCTGTAAAAGGGAAAAACTGGCTTAC 2372403 32 100.0 35 ................................ TTCACGGCGCCTGTGACGCCATGCCATGCCTTAGA 2372336 32 100.0 36 ................................ AATATCAAACAGAACACGGCTGCGGCCTGGCTGGAA 2372268 32 100.0 35 ................................ ATAATTATCATCTACAAGGCACTGCTTCTGGGTAT 2372201 32 100.0 34 ................................ TGAAACCATGACGGATTTCCTCACAGATGCATAC 2372135 32 100.0 35 ................................ TGGTTGGCTGTGATGCTTGAAGAAAGCGGCACGTC 2372068 32 100.0 34 ................................ AGTTGAAGTACGACTTTATCCGAGTCTTGATGAA 2372002 32 100.0 35 ................................ CCGTGTGCGTCCGCCGGATGAGATTTCCGCGCCGT 2371935 32 100.0 35 ................................ GTTGCTGATAAAAGCTAGTTCCACTAACACAGCAG 2371868 32 100.0 36 ................................ ATCGGGCCAGGGCAAGAAGAGCTGTCTTTTAAACTG 2371800 32 100.0 35 ................................ ATGAGGTAGACCCTTTTCATACGACCGTAAGCATC 2371733 32 100.0 35 ................................ GAGGACCGCGGACGACGTTTCACGCGAAATCCGAT 2371666 32 100.0 36 ................................ GCAAGCCGGGCAGATCTGTGTTTCCAGCCATTTTAC 2371598 32 100.0 34 ................................ GGAACTCATCCAGGAAGACGCCGGTATCGTCCCG 2371532 32 100.0 36 ................................ TGGGCAGTACTGATTGGCGTCCTGGTATCGGCCGCA 2371464 32 100.0 35 ................................ CTTGCGGGTCACAGTCAATCATGAGTACTTGCGGT 2371397 32 100.0 36 ................................ ACGCTGGAGGATTTAGACGGTCGGACACCCGAACAG 2371329 32 96.9 36 ........T....................... GTCGGCATGGCCGCAGATGCCCTCGACGCCATCTGC 2371261 32 100.0 34 ................................ TACTGGCGTACTTTGAATAAGCGACAAATCACAT 2371195 32 100.0 35 ................................ GTTGCTGATAAAAGCTAGTTCCACTAACACAGCAG 2371128 32 100.0 36 ................................ TCCGATGCCGTGGCTAAGTACCTCGACCGGATTGGC 2371060 32 100.0 36 ................................ GCTGTCTACCATCTCCCATAAGTCAGCACCATTGAC 2370992 32 100.0 35 ................................ TTGCTGGTTGTCGCCGAAGCTTTTATCCGGCTACT 2370925 32 96.9 0 ..................C............. | ========== ====== ====== ====== ================================ ==================================== ================== 39 32 99.8 35 GTCGCACCCTTCATGGGTGCGTGGATTGAAAT # Left flank : ACTTAAACGAAAACTAAGTCGCGTCGATACTGGATTTTATGGTATAATATAATTGTCGTTTTTGTGGATTCCACAGGGACGTGGATTGAAATTGTAACGTTGAATAGTAAGTGAGGTGGAAACCTGCCGTATGCTAACCCTGCGGCAGGTTTTTTCTATAGCTATTAAATTACTAGTCAACATTACAGAATTATATATTGATTTTCTATGGTGAAAGAGGTATACTAACCATATAAAATAGATTACCGAATTAAGACAGGGCATCTTGGCTATCCGTATATGTAACCAGGTCATACCGAACTCTGTCAAGACTGATTTATAGAGAGAAAGTGGTGCGAAGCGGCATCACACATAAAATATATCGGGGTTCCGCGCAGGCCTTACTTTCTATAAAATTAAGCAATATCCAGATAATTAACTCAAAAAATTAGATTGGCTTTCTCTCAGTTCGCAATATAGATGATAGAAAAGCAGGCGATGACTGAGTTAATTTGAAGACT # Right flank : CACATGGAGGCTCCGCCTTGTACGGATACTTACAAGTCTCACCTTTCATGGGAAAAAAGAATGTTAACTTGCTTTAGATTGTTCGGGCAAAATTACTGCGGAAGAGAATCTTCAATGGTGAGAATCCGTATTGGAATGGGGAAATGTTTTTATGGATCAGCAGTCGAATTTTACAATATAATGAGGGGGTGTCTGTTATGGAATACGATGAAGATGATTTTTTGATGATTTCAGGGATACAACATTTTTCATTTTGTCCTCGACAATGGGCCTTGATTCACATCGACCAGGTTTGGGATGAAAACATGAAGACGATGGAAGGCAATATTATCCATGAAAATTGCCATAATCCAGATTTTATAGAGAAGCGTGGTGAAATTCTTATTTCTCGCGGGATTCGGATTGCTTCAAGGACTTTAGGTGTAACTGGACAATGTGATGTGGTGGAATTTCACCGGGATGATGGTGGAGGGCGTTTATATGGACATAATGGCTTATGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //