Array 1 665478-666498 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP066705.1 Staphylococcus pseudintermedius strain HSP135 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    665478	    36	 100.0	    30	....................................	GGTTAAAATAGTTTTTTGAAGATTGAAAAT	
    665544	    36	 100.0	    29	....................................	CAATCAAGTGCAGATTTATCAAAAAAGTT 	
    665609	    36	 100.0	    29	....................................	ATTAATGGAAGCTGTTAAAGCTAGGATAC 	
    665674	    36	 100.0	    29	....................................	TCATTGTAAAAGAATCCTTGACGATAGCC 	
    665739	    36	 100.0	    30	....................................	ATCTTCACTTGTCATAACGTAAAGGTTTAC	
    665805	    36	 100.0	    30	....................................	TTGATATCAGAAATCAGAACATTCAAAAAA	
    665871	    36	 100.0	    30	....................................	AAAAATGCTTGGTCTTTACTGATTGAAGTT	
    665937	    36	 100.0	    29	....................................	AACTGTCAATAATACCCCCTACAAGATGT 	
    666002	    36	 100.0	    29	....................................	TGTACATTTAAACGATTTATTCGGTCAAG 	
    666067	    36	 100.0	    29	....................................	TTGTGAAGGAAAAATCGACTTCACGTTGG 	
    666132	    36	 100.0	    30	....................................	ACCGTTCCATAGCTACATGTCCGCTAATTG	
    666198	    36	 100.0	    30	....................................	CGTTAAGATTTGTTCAAAATCTTTTATTGC	
    666264	    36	 100.0	    30	....................................	AAATAGATGAGGAAACTTTTAATAGTATCA	
    666330	    36	 100.0	    30	....................................	GTAAACACTGTTTATCATGTTGAAGTGGCC	
    666396	    36	  97.2	    30	............................A.......	GTTATGATGTTTGGCGATATGGGTCGTCGT	
    666462	    35	  86.1	     0	.........T................-.CA.C....	|                             	TC [666495]
==========	======	======	======	====================================	==============================	==================
        16	    36	  99.0	    30	GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	                              	       

# Left flank :   TTTTAATTATATTTTTTCCGGAGTCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGTGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGCCGAAAACATTGTCATTCGCTGA

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//