Array 1 19575-18689 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANNG01000021.1 Campylobacter concisus UNSWCS Contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================= ================== 19574 33 100.0 49 ................................. ATGTCCCCAGAATTTTTTTACCAGACTTTTTCTGTCAGGCAATAAATTA 19492 33 100.0 41 ................................. AACGTAGCTATTAAGCCAGCGCCTAAGTATTTGTATCATTA 19418 33 100.0 46 ................................. AACCGCCTTGTTGCTGTCCATAATTTTGTTGTTGATAACCGCATTA 19339 33 100.0 44 ................................. TATATTTCGTTTGAAGTATATCTTTTACCTAATAATTCTAATTA 19262 33 100.0 43 ................................. GAAAATCTTCACAATCGATATCTGTTGTGTTAGCCATAAATCT 19186 33 100.0 49 ................................. GTTTTCATTTTTATCTCCTTTGTAAAAAAAAAATGAACTATATTTATCT 19104 33 100.0 46 ................................. ATTGAGGAGGTTGCCATTTTCGTCATAAGTGTTTATAACGAAATCT 19025 33 100.0 40 ................................. ACACCTCTTTGCACATTTCGTGCAGTTCCTTGAAGTATCT 18952 33 100.0 42 ................................. TATGAGAATCCAATATCAATGCCTAGTTCCATAATTTTATTA 18877 33 100.0 46 ................................. CCTTGATTAAAAAAGTGAAGGTATTGCTCAACTAATGGATTTATCT 18798 33 93.9 44 .....C....C...................... CATGTTTGATTTTTATCTTCAAACATAGCTATTGGTTCGTATTA 18721 33 93.9 0 ...............A...............G. | ========== ====== ====== ====== ================================= ================================================= ================== 12 33 99.0 45 GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : TGTATGGCTAAAAGTGAGACCTTAGGCGAGGGCAAGATATTTTGCCCAAGCGACACCTATGTCTAAGCGCCTTTTTTAGGGATTTGATTTTCGAACTTTTGAAAATTTCAAAACACCCTTTTTACCGCATTTTTATGTTTTATTAAGTTTCAAAAACTTCGAAAATCTCAAATTTCCCTATCCCAAAAAAGACTTTCTCGAACTTTTGCATTTTTGCACTTTTTAAAGTTGCCTTTTTTAGGCACTTAGCATAGAGCCCAAATTTGCCAAAATTCGAAAATCACACAAATTTTCACTTTTCATTTTAGATTTTCGAACTTTTTAGCTTTCATAAATACCCTTAAATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCGAATTTTAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGGCAAAGAGTAGTTCTTTTAAAACTCATTGTTAATTTACAATCGTTTTTTGGGCTATTA # Right flank : AAGCAGGTGTATCTAGCATAGTTCTCAAGTATTAGTTCATAGATATATTTCATTTTAGTTATTTTTTAGTTGATATATAAAAAAATAATCATCATATTGACTATATATGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGATACTTACTACAAAGGTACTGACATATGGGGCGCTTCCTCTTTTGCTCTTGGCTTTGATGGTAAATATGGCTTAGTGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGTCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTTGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 8561-9839 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANNG01000035.1 Campylobacter concisus UNSWCS Contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 8561 30 100.0 34 .............................. ATTGTGGTAATCAAATTATTAATACTAACAATTC 8625 30 100.0 36 .............................. AAAAATAAAAAAATATCTCATAACTCATCCAGCAAA 8691 30 100.0 37 .............................. AAAAAGCTATCAAATCAGGCACGCTTTTGGCTTCAAG 8758 30 100.0 36 .............................. ACATAAGAAAAAGTAACATCTTTACAATCAGCACCA 8824 30 100.0 35 .............................. AAAATGCAAATCGTTAAATCTGACTATGATTTAAA 8889 30 100.0 37 .............................. TTAGCTGGCTTTGTGTCATATAGGAAGTATTCAACTG 8956 30 100.0 35 .............................. TAAGTAGCTATATCGCTTCTAAGAGTTGAAGGACT 9021 30 100.0 38 .............................. GGGTAGCTTTGATTAAGTGCCACTCTTCAAGCTCTGCT 9089 30 100.0 36 .............................. CCGCTATCATCAGTGACAAACATAAAATCAGCAACG 9155 30 100.0 34 .............................. AAGTTTTTTTATACAACTATGACCATACCATTAC 9219 30 96.7 36 .........................A.... TAAGACCTAGTGTTTTGTAACCAAGAGGTTTGATCT 9285 30 96.7 34 ....................G......... GTGTTCGCATGCAAACGCCGTCTAAATCTACATC 9349 30 100.0 36 .............................. GTAGCTGGCTTATCTCGTATGAGTTTATTCGGTTAG 9415 30 96.7 35 ...........T.................. AAAGCTTCGCAAGGAAAATTTATATCTAAAAAACT 9480 30 100.0 35 .............................. CAAGTGGGAAGACTGGCTTTGAGAGTGAAAGCGGA 9545 30 100.0 35 .............................. CCTTCGTATACGCTTCCGTCTGATACCATTTCACC 9610 30 100.0 37 .............................. GGTAATAAAATTTAAAAGGAAAGCAATGAAACAATAT 9677 30 100.0 36 .............................. TCAACTTTTAAAATGATGCTCTCACTCGCATTTGCA 9743 30 100.0 37 .............................. GCAAAAGATGATAAAACCGCAGATACAAGCGATAAGA 9810 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 99.5 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTTCACCTCGATCTTGCAGAGATTTTTAAGCCGATCTTGAGCGATACGCTGATTTTTAACATGTTAAATAAAAAAGAGATCACCGCAAATGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGTGAGACGCTCACGGTGGGTGGCAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAGGCAAATAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCTTATGAGGGCTTTAGGTGGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTAGGGCTTTGCGTATTTACACATGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAATGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : CAACACAGAAGCGACAAATTTAAAAGCCAAAGATTTTCAGAGAAGAGGTTTAAAATAATAGATCAGATAAATAATAATTGCTATCTTGCAAAGATGTATCAAACAAACGATAATATTGTTTTATGCAAATACTTCGAAAAACCAAAACCCCAGCCAATACAGCAAAAAAGAAGCTAGAAATAATAATGAAATAGACTAAGCATAAACAAGCTTAATATCAAGAGCATTCACAACCTTAAATATACTTTCAAATCTAGGTTTTGAATTCTCTTTAAACATCTTATAAAAGCTTTCTCTATTTAAATTTGCCTTCTTTGCAACGTTTTCAATGCCTTTTGACTTTGCTATATAAAATAATGCTCTTTTAAATTCTTCAATATCGCCATCGGCTAAGACTTGATTTAAATACTCTTTTCTTAATTCATCAGTTATTAAATAGTCTTCTAAATTAAATTTAGTAAATTCTTCTTTCATTTATAATCCTTTAAAATTTCTTTTGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //