Array 1 40956-41511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTYC020000006.1 Streptococcus sinensis strain Forsyth1A Contig06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 40956 29 100.0 48 ............................. ACATATCTAGGACTAGAGAGGGCTTTATATCCCTCAATCTGCTTGGGG 41033 29 100.0 40 ............................. AAATGGCATAGTAGCCACCTCTTTCTTTAAGGTGTAGAGC 41102 29 100.0 45 ............................. AGGAGTTGCTGGAGTTGCTGTTTCCGCCGCCGGAGCGACAGTTTC 41176 29 100.0 47 ............................. ACGTTAAAGTAACCTTTAAAGTCTAACTCTGCCTCCTTAAAGACCGC 41252 29 100.0 53 ............................. GAATAAGCTCAATGGCTTGCCAGTAATTGCAATATTGCAAATTATTAGAAAGA 41334 29 100.0 46 ............................. AATTCTCCGAACCCCACTTCGAGGAAAGAAATTATGAACTACTCTG 41409 29 96.6 45 .................G........... GCTAACCAAATCTCTCGTAGATTCATCCGATCAGTGTGGTAATTC 41483 29 86.2 0 .........................GTTG | ========== ====== ====== ====== ============================= ===================================================== ================== 8 29 97.9 46 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : CATGCTTCAAATAATCGTCCTTATAGTTTGCATCTGGATTTTACGGATTATATGAAGCCAGTTATCGTGGATCGAGTGATTTTGAGCTTGATCAATAAACATCAAATCAATGCTACAGATCATTTTGAAGAAAGGGAAGACGGATCGGTTTATCTGAATCGGGAAGGGAAGTATATCGTCTTGCGAAGTTTTGAGGAAAAACTGCAGACGAGGCTAGTCATGGGAGGCTCGACCTATACCTATGCCCAGCTCATCCAGCACGACATTCGGCAGTTTAAGAGAATCTTGCAGCAGGATGGGGACTTGAAACGCTTTAAACCCTACAAATACTATTAAAAAGTCGGTCGATCTTTTCGATATTTTGTCTCTTTTTCAAAAGCTGTCAACCAAGCGGTTTATAAGCGCTAGGACAAAAAAGATCGACCGACTTTTTTCATTGAAATCTTGAAAAAAGCCCTGTTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTT # Right flank : GTGTGTCTTTGTCTGTCTCCGAGGGCACCAAAAAAGCGAGCAAATTCTTGTCTGCTGGGAAGCATGAGAATTTGTTCGCCTTTTGTTTGGTAGGAATATTTGAAATTTTCGTCATGATTTGCTATACTAGTAGCAGTTAGAGATTATAGCGGAGCTGTTTCCCGCTACATGGATAATCAAGAAAAGTACTCTTCAGTGCTTTTTTATTGTGATAGAAAATGGAGGGATTATGGAGCCTATTTTGTTGTAGAAAACATACTAAGATTAGTAGTGAAGAAATCTCCGACGGGAGAGAGTACTCACTACTTTTTCTTTATGTTAAAGTAGTGGTGTCTTGTAAAGTCGTAGGGCTCTATGGCGCTAGACGTCGCTTGACAAACTGGCAAGACACCTTGTTTTAGGTGGAGTTTGATCAAAGTATGTGGGACGCTCAACGTCGCGTATTGAAAATAAAATCACTAAAACATGGAATTATTCAAGACAAAAGAGGTAATGTCATG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 49635-50489 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTYC020000006.1 Streptococcus sinensis strain Forsyth1A Contig06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 49635 29 100.0 45 ............................. ATTTAGAAATTTTATCTTTTGACACTAGCGGCAGAGAGTTTTTTC 49709 29 100.0 42 ............................. AGAAAAGAAAAAATTTTCTTTTTCATTGTAATATACCAAAGC 49780 29 100.0 42 ............................. CATTTACCCAAGCGACTTTTTCTTGAGTAAACGTTCTGAAAA 49851 29 100.0 49 ............................. ATTGCTGGATAAAGGGCAGTTCCGATTATTCTTATTAACTCCTTGATAT 49929 29 100.0 43 ............................. TTTTCTTCGTGCGATACATAAGGTATCGCTACTAAGACATCTT 50001 29 100.0 50 ............................. TAGTAGATACTCCAAGAACAGCTACAGAGATTAGCATAAAAGAAAAAATT 50080 29 100.0 46 ............................. AGTAAGATAATTCCGTGTTTTTCCCAGAATTTAATTTCTTCACGAA 50155 29 100.0 42 ............................. CAGCAGCAGCTGAGTAGTTCCGCTCCAATTTTTGAGGACAAG 50226 29 100.0 52 ............................. AAATACTGGATATGAGGCATGTGGACCGCTGGTAGAATGTTTATCCGTTAAG 50307 29 100.0 53 ............................. GATAGATAGTTTCTGTAGGGCGCTTTGTCTATGGTTAGAAAGACGCTGACATC 50389 29 100.0 43 ............................. AAATCCAATTCATATTCCTTACCCACCTTTTTATTTTTTAGCT 50461 29 82.8 0 ..................A......CTTG | ========== ====== ====== ====== ============================= ===================================================== ================== 12 29 98.6 46 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : GTCGATCAACGCTTAAGATTACAGTTCGGAGATGATTACCATATGGAAATCCAGTCTGAAGCAGATAAATTCACCCAGATTAGTCTTTATTTGCCGCTAGATTCAGATGATTAAGTTCGCTAATCTTCAATATTAAAGAGCCTGGGACAAAAGTCCTAGCCTCTCAATTATCTTTGGATTGTCGAGCAAGACGCAGTGGTTGAGTGGGCTCTACTACGCTGATTTCATCAGCTTTTACAGCCCTACTCAACTGTGCGGAGGTGGGACGACGAAATCGAATTCTAACGAATTACCGATTTCTGTCCCACTCTCGATTTTTCTGATTTTATCTTTCAAAAAGTCGGTCGATCTTTTCGATATTTTGTCTCTTTTTCAAAAGCTATCAACCAAGCGGTTTATAAGCGCTAGGACAAAAAAGATCGACCGACTTTTTTCATTGAAATCTTGAAAAAAGCCCTGTTTTTTGATACAATCAATCTAGAAACAGCGAAAATACTGTT # Right flank : GTGTGTCTTTGTCTGTCTCCGAGGGCACCAAAAAAGCGAGCAAATTCTTGTCTGCTGGGAAGTATGAGAATTTGTTCGCCTTTTGTTTTGTAGGAATATTTGAAATTTCCTTCATGATTTGCTATACTAGTAGCAGTTAGAGATTGTAGCGGAGCTGTTGGCCGCTGCATGGATAATCAAGAAAAGTACTCTTCAGTGCTTTTTTATTGTTATAGAAAATGGAGGGACTATGCTTTACATTTGGTCTTATTTGAAACGCTACCCCAAGTGGTTGGTACTGGATTTTGTGTCGGCCATCTTTTTTGTAGTGGTCAATCTAGGGCTTCCGACGGTTTTGGCGCGCATGATTGACGAAGGGATTAACCAAGGCGATCAGGAACGCCTGTATTTCTGGGGCTTTATCATGCTGCTGGTTATTATCCTTGGGATTTTGGGGCGGATTGTCCTTTCCTATGCTGCTGGGAAATTAACGACCAGCATGGTGCGGGATATGCGGAATG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 59890-58488 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTYC020000002.1 Streptococcus sinensis strain Forsyth1A Contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 59889 23 100.0 49 ....................... GAGCCTTTCTTTTTGCTTGAGCTACTACTCAGCAAGTTAGACCCCCCAC 59817 23 91.3 50 ......T.........T...... CCAACTTGTTGAGCAGTTGTATGAGCTTCAGATGATGTTAGCCCCCCCCC 59744 23 95.7 50 ................T...... ATACATGTACATGACCTGCACTACCGATTACAATATGTTAGCCCCCCCAT 59671 23 100.0 50 ....................... TTAACCTGCTCCTCCAAGTCTCTGATGCGCTGGTTTGTTAGAACCCCCAA 59598 23 100.0 50 ....................... GAAACGAGTAAATAAATCATTTTTCACCCCTACGTTAGACCCCCCCACAC 59525 23 95.7 52 ........C.............. ACATTCCCAAGTCGCCAGTTGTCACGCTCCCAGTTCGTTAGAACCCCCCCCT 59450 23 95.7 48 ........C.............. TTTCGCACGATGTCGCTTATGTGGTTGATGTGTTCGTTAGAGCTCCCC 59379 23 100.0 48 ....................... CGAGAATCGTAAAGAGTACCGTTGTTGTTCTTGAGTTAGAGTCCCCCT 59308 23 95.7 47 ........C.............. GCCACAAATCCAGTGATAAAAATCTTCATATTTGTTAGTCCCACCTA 59238 23 95.7 49 ........C.............. AGACATCTCTTCTCTAGTTGCCTCTGAAAGATTATTGTTAGACCCCCCT 59166 23 95.7 52 ..............T........ GTTTTGCTACCATGCTAAACAGAATGGTTATCAAACCAGTTAGCCCCCAAAA 59091 23 91.3 47 ........C.....A........ AATTTCGTTGTTTTGATAAGTTCTAATGTCATGTGTTATAACTCCCT 59021 23 87.0 51 G.......C.....A........ GTTTTAAAATCTGTATTAAACGCAAACCACTCCGATACGTTAGAACCCCCT 58947 23 100.0 49 ....................... TATATGTTAACATATTAAATTTTACCTTTCGTAAAGTTAGAACCCCCAA 58875 23 95.7 48 ........C.............. GGAGCAGATGGCACCTATCATCGCTCAGACACGGGTTAGACCCTCCAA 58804 23 91.3 49 ........C.....T........ TCTTTTTCAGTTAATTTAGTTACATCAACTTTATCGTTAGACCCCCCAA 58732 23 95.7 50 ........C.............. ATTGTCATTTGTGACTTCCAAAGGGGTACTACTTTCGTTAGATCCCCCCT 58659 23 91.3 52 ..A...........T........ GCAAAAATTTTAACTACTACAAAATCACAGCACCATGTGTTAGGACTCCCAT 58584 23 95.7 51 ........C.............. GCTATCAACAAACACTCGGTCAAAACTACCGCTATTTGTTAGAACCCCCCA 58510 23 82.6 0 ........C...........GTA | ========== ====== ====== ====== ======================= ==================================================== ================== 20 23 94.8 50 AATCCTCGAGAGGGGACGGAAAC # Left flank : AGCCTTGGATCCAGCTGAGTATGTGTCGAGCTATACTGGAGGAGGGAAAGATGGTCTTCTTTAATCTTAATGATGATGAAAAAGAGTTTGCCAGAAAGAAAACAAAATTTTGTCTGGTTATTTACGATATCGTCAGCAATAAGCGGCGCTTGAAGCTGGCAAAGCTTTTGGAAGGCTATGGCGTGAGGGTTCAGCGCTCCTGCTTTGAGCTGGCCCTTGAGAAGCTGGACTTTGACTGCCTGGTGAGAGAGCTGAGAGCCTTTTATCAGGCAGAAGAAGAGGGGGACAATATCATTATCTATCTGGGGCATAAGGAAGAGAGGATTGTTTTTAATCCTCATGATGGCGCGGAGTTGCTAGAGGATATTTTGTTCTTTTAAGCTGTTATTTCTGGGCTAGACATGGTATAATGGAGTTAGATTTTAGCTAGTTTCTAAGGGGTGCTAGATGTGGTAGGGGTCTTCTGAGGCTTTATACAAGATATGCTGTTAGACCCCCCT # Right flank : GATGGGGGCTTTTTTACTTTCCCTCAGCTTCTTGCTTTGCCAAGAAAGAAGGATGTTGACTGCTTAAGCTTTTTTAAACGCTTCAAAAAATATTGACAACGCTTTCAAAACTTGATATAATAAGCTCAGTAAATAATAATCGTTCTAAAGGGCGCCATGAAATCGGTGAAACATACTTTTGCCTTTTTCGGGCGCTTTTGCAGTATAGAGAGGAGACCGTGTGAAGAAAGTAGAGTTACATTTATCAAAGACAAGACTAAAAGACGAAGAATTGGTCAGTAAGCTTCAGGGCTTTTTGATGGCGCAGATTTCACCAGACTTTGCGACCTTTCTCCATGAGCAGGAGACCAATCCCTACTCGCTGAATCTGTGCTCCACGCGCGATGAGTCGGTGTGGGTTGTCAATTTGCTTTCAGAAGAGGCGGAACAGCAAATGCTAGCTCCTTTATTAAACCTGGAAACCATCAAGCTAGAGAGCTATGCTGAGGAAATCCTTGTCA # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.18, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [23-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 72065-71901 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTYC020000002.1 Streptococcus sinensis strain Forsyth1A Contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 72064 32 100.0 34 ................................ CAAACGGAGACCTAGATTTTAAGGAAATTAGGTT 71998 32 100.0 34 ................................ TTTAATTGGTTGATAAATGTCAAGTAAAGCTAAA 71932 32 87.5 0 ............................GTGG | ========== ====== ====== ====== ================================ ================================== ================== 3 32 95.8 34 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : CCAAGACAATCCGTGGGGAATTGGAATCCTATCCACCATTTTTGATATAGGAGTTGGTTTATGATGGTATTAGTGACATATGATGTCAATACAGAAACGGCACGAGGCCGAAAGCGATTGCGTCACGTGGCGAAACTGTGTGTGGATTATGGACAGCGTGTTCAGAACTCGGTCTTTGAATGCTCGCTGACTCCAGCAGAATTTGTAGAAATAAAGGCTCAACTTTTGAGTATTATTGACACTGAGTCTGACAGTATTCGTTTTTATTTGCTAGGAAAAAACTGGCAAAATCGTCTAGAAACGATTGGACGTGATACGAGTTATGATCCTGATATAGGGGTATTACTCCTTTAAATAGTTTAGTGTGAATAGTGGTTGCTCATAAAAAAGCAGGCCTTTCGCGCAAAAAACAAACAAAAATAAGGCAAAAATTCGAAATTCTAGAAGAGTTTTCTTTCCTCGAAAGATGATTTTTGCCTAAAACAGTGCAACTACGCGCT # Right flank : ACTATTGCTAGTCGTTGTCTTTTTTGCAGTTTAATGTAGCTTAAAAATTTTTCGTTATATTAAATTACTGATGAGGTTAATGTGACAAATTGTATATAATTTCAAATATGTATTTTTTGAGATAAAGTATACCATTATGAAAAGTAGTTAAAGTTATGGATTTAGAAATAACAAAGGAGCAAGCAATAAGCCGATTTTCAATCTGCTCTGGATAAGAGAAGGAGCAGGTCAGATAGGGGTCGAAACCTAGAGACAAGAAACAGGACAAGCCTCAGTATATGAACTGAAGCGCTTGCTTGTTTATTTTTATTTTGCGATTTTCTTTCACGGAATGTTTCTGACTTAGTGAATGAGTGATTTTCGCCTGAATCTAGTCATTATTAGTCTCATATGTTTTTCTAGTTTGCTTCTTTATGATATAATGGTCTTCAATATCTCAAAGGAGGACAGCTTTGTTTTTAGCTTTTAAAGAGATTGTCTACAGTCGCGGGCGTTATCGT # Questionable array : NO Score: 8.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //