Array 1 92476-93540 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNUR01000039.1 Helicobacter pullorum strain 229336/12 Contig_39, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================== ================== 92476 36 91.7 30 ....A....GG......................... GTTTCATCATCAATATTTTCAACACTAGAA G,CT,TC [92480,92484,92491] 92547 36 100.0 30 .................................... TGTGAGTGTAAGTGGAGAGAGCATTTCTGT 92613 36 100.0 30 .................................... CTAGACCCAAAAAAGAACCAACCTATATCA 92679 36 100.0 30 .................................... AATATGTAACACCGCTAGCCCTTATTACAA 92745 36 100.0 30 .................................... AGAATATTAATCATTAACAAGCTTCCAAAT 92811 36 100.0 62 .................................... AATATGTAACACCGCTAGCCCTNNNNNNNNNNTACTGGAGAATATAAGCTTTATAGTGAATA 92909 36 100.0 30 .................................... TGATTTGCTCTTTTTTTAAAGAAAGGTCTA 92975 36 100.0 30 .................................... TTTAAGAAAACGACCAAGATATCGTTTGTG 93041 36 100.0 30 .................................... ATAATGCTTAAACTCCAATTTGCTATCAAA 93107 36 100.0 30 .................................... CCACGCTCATAAACATTACTTACAACATCG 93173 36 100.0 30 .................................... TTTAACAGAAGGAGAGACAACGCGTATAGA 93239 36 100.0 30 .................................... CGTATAAACCGCTTTGGGTCTGATAGAAAG 93305 36 100.0 30 .................................... TTATCAAGATGGATTTGGACAACGCTATTC 93371 36 100.0 31 .................................... TGCAGTTTCCGGAGTCGTAGCACCAACAGGA 93438 36 100.0 31 .................................... TATGATAACGATACTCTTGGTATCTATCAGA 93505 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================================== ================== 16 36 99.5 32 GTTTTAGTCCCTTTTTAAATCTTTCTATGCTAAAAT # Left flank : ACATTTGTAGCAAACACACTTCCATTAGGTGCCAAGTCCAATTCAAAAGTATGAGGCTGTTCTCCATTAAAATACCTGTCTAACCATATTTTAGTTTGCAATAAGATAGGTTCATCGTCTTTTTCTTGTGTAGATTCCCTAAGATTTCCTAAATAATATTTCTGCCCTTCTATCCAAGAACCTATAAGCTTATTATCTTTACTTGCTAAAAGTATCGTGCCAATAGGACTTTGGTAAAAAGTAGTATATACCATGATTTTCCCTTCAATTCTTAAAATATTTGTTTGAATCTTGTAGTGTGTTATCCTTGATTTTTTAGTCTAAATTACGAAAAACCCCAAAAGATAAGACAATCTAAAACTCTTAATTTTTCACCACACATTAGCTTATCGCACAAATCCAAAATATAAATATAGCAAACCTATCTTATAGTAATCAAAAACTACATCATTTAAAATATTTTAAAAAACCTAAATTATATCAAAAACAATAAAGTAATG # Right flank : TAGACCAAAAAATTGGGATTTTATGCTACAATAGCAAAAGAAGATTTAAAAAGGGACTAAAATAAACCTACCTAGTATTTCTTGGCAGTACTAGGAGTAAAGGTGCAGGGTGTGAGATTAAAAACCTCCAAAAATCCCTTTTTGCCAAGACTTTTTTACTTTATATTACATAATACTTTTCACATTTTATTGTTTTTTATATTCCCTATATTGTTACTATTCTACACATATTATCCTAAGTAGCGCACCATTCTATCTTCAAAACTCAAATAAACTTCCTTGTATATTTCTTGTTTTCTTTGATTTTGTTTGCAACAACTTCTCTTCATCGCTATCTTTATCATTATCCGCATACACATACTCTCCCTTTTTCTCATCAAACCCAAAAAGCACGAGATTTTTTGGATCATTCATCATCTCATTGAATCCCACCCCACCTAGCAAAATCTCCATAGAATCAAACTGCTTCTCTGTGATGATAAGACAGCGGATACTCCCCC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATCTTTCTATGCTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 79296-80335 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNUR01000014.1 Helicobacter pullorum strain 229336/12 Contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 79296 36 100.0 36 .................................... CAGCCTTATTCTCTACTCTTTCCACTCCGCTTATAA 79368 36 100.0 35 .................................... CCAATAACTAAACCACTGTCAGTTAGTGGCCAACC 79439 36 100.0 39 .................................... CTAACCACCTTATCTTTGAGGCTTCTAGCTTTAAAGGTA 79514 36 100.0 32 .................................... ATCTCTTTTAGCACTGCTTCATTCTCTGCTTC 79582 36 100.0 38 .................................... AAACAAAAAGAAATAATATTTCATCTTAGATTTTACTC 79656 36 100.0 35 .................................... TTCAACATACCCACCAGCCAAAACCTTTAATAAGC 79727 36 100.0 40 .................................... TTGATCACGTACAAACCCGTCCAAAATATCTACACACTCA 79803 36 100.0 33 .................................... TTTCTCTATAATGTGTAATTCCAGAGGTCTTGC 79872 36 97.2 36 ......................G............. CTGTGTAGCTTAACGGTCTCATATCTTACGCAATAG 79944 36 97.2 36 ................T................... CTCTCGCTTATCATTGGCTTTAGATATTGATGTTTT 80016 36 100.0 36 .................................... TTTGGCGAATTTTTTTTAGTGCGGAATTTATTATGA 80088 36 97.2 33 ...........T........................ CATAAAGGGCAATAGTTTCCCCAACTTCAAAGA 80157 36 100.0 34 .................................... AATTTAAAGAAATGTTTATAAGTTAAAGTAGTAG 80227 36 100.0 36 .................................... ATTCATCTTTTGCCTGAATGAGCTTGTCAAGTTCTG 80299 36 72.2 0 ............A...TAT.....AA..T....TTT | C [80329] ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 97.6 36 ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Left flank : AGTCTATGAGTGCCAACTGACCAAAAAAGCACTCAAAGAAATAAAAACCAATCTCAAAAAAATACTCAATCGCAAAACCGATTCAATCCGCCTTTATCGAATCTGCAAAAACTGCAACAACAAAAGCAAGAGCATAGGCAAAGGAAAAGAACCATTTGCTCCCATAGATTTGAACTTCTAGTGCTCAAAAGAGATTTGCGAAGTTGTCATTTTTTTAAGCTCTACAACACCGATAAATACGCACCCCAAATAACTTAAAATTAGCTAAAATTTAGCAAATCATACTTTTTTTGCATTTTTAGCAAACCAATTTTTTCTCCAAACCACACAATTATCGAGATTAGCAAACATCCAGCTTCCACAATTTTTACCCAAAATTTGACATTTGCGAAGTTTTTACAAAAAATCTCCCACAAAGCCAAAAAATATGGGATTAAATAAAGATTTAAGTTTGCTTAATATAAAATCTCAAAATCAAACGAGCCTCGTTGTCTCCAGCT # Right flank : TTCCAAAGATATTAGTATCCATCATTTAAAATTTATGATAATATAGCGTTATATTTAAGCTATACTTTTAAGGAATTCATTTGATAAAAGAACGCACTTTTGCCCCTTTATTGCCAGATTCATTTCAAATTCTAAGCCACAAAGAAAAAAAGGCTTTTTTAAAAAAAGAAACCATACTCAAGAAAAAAATCCACTATTTTGACTGGACAGCAAGCGGATTAGCCGTAAAATGCATTGAAAAACGAATAAGAAAAATACTACCATTCTACGCAAATCCACACTCAGAAAGCTCCTCACATTCCAAAATCATAGGGGAAATTTACGAAAATGCACGCAAGAATCTCAAAACATTCTTTGGGCTTGATTCTAGTTTTGCCCTCATTTCTTGTGGTTTTGGCTCAAGTGCAGCAATCAAAAAATTTCAAGAAATTATGGGAATCTACCTTCCACCCCAAACCAAAAGCAATCTCAACCTAGAAAATCTCGATAAATCTCTTTTG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //