Array 1 13179-12922 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIRM01000092.1 Microbispora hainanensis strain DSM 45428 92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 13178 37 100.0 36 ..................................... AACAAGGCCACCGACCCGATGCTGCCCGGGGTGAAG 13105 37 100.0 36 ..................................... TGGCTAATCCCAAGTCTCGTCCGGGCAGCCTCAAGA 13032 37 91.9 37 .........CT......A................... CGCGCCTCCTCGGCGCTGCCGCTGCCCGATCTGTTGT 12958 37 94.6 0 ..A......................A........... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 96.6 37 GTGGCGGTCGCCCTCCGGGGCGGCCGTGGGTCGCAAC # Left flank : CACCCTCTGGACT # Right flank : TTCGTGGCCTACCGCCGCAGCCTTCCGCTGGACGCCGGTGGCGGCCACCAGGGGCGGCCAAGGGGTGTAACACCTGCGTGGGAGCTCGGCTGGCGGTTCGATCAGGATTCGACAACTAGATCTTCATAACCGGGAAGCAGCGGAAGCATCCGAGTTGGAATCACAGCCGGAAGCGCTCTGGTTCCTCACTTGTCCCGCCTTTGCCACCTGCTTACGCTACGTAACGCAACCTAGTGAAGGCTGAGAGTAATGAGGAATTGTGATTCCAGGCTGCGGATTAGTCGGATGACCGCTCCCCGATCAGCAGCGGCCGTCTGTCTTCTGGCCCTCCTGACTGCATGCGAAACAGGGCGTCCGTCTTCCTTACCGCCCCAGCCTCCAGCGCCAGCCACCTCGACACTTTCTCCGGCGAAACCAACTCCACGACTGACGCATGACGTGATTGTCTCGGCCTACAGCGAGTACTGGAACACACTCACCGCCGCTGGCAGATCCTCGCC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGTGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-18.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1908-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIRM01000015.1 Microbispora hainanensis strain DSM 45428 15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================================================================== ================== 1907 36 73.0 111 TAA............-GCA...A...A..G....... GCCGTCACTACTGAAGAACTTACTCTGTATATCGAGGAGTGAGGCCGCCCTTCGGGGACAAGGAGAGTGGCAACGAAGAGGTCCGGTACCCCGTGCAACTATCCCACCTGG T [1897] 1759 37 78.4 38 A.T.....T...A...G.A...A...A.......... CAAGAAGGCGTCGGAACCGATACAGACGTCCCAAAGAA 1684 36 83.8 110 C.A......A...-..G.........A.......... CGCGTGGAGGACATTACCCGGGTTCAGTGTCAAATCGGTAAGCGATTACCCTTTCGGCGGTTGAGGGTTGCAACGAAGACGGTGTGGCCACCGACACGGACGTCCCAAAA 1538 36 75.7 52 ..A......A....T.G.....A...A...-..TT.. TTGAAAACTAATTCGCGAAAGTTTTGCTGAGGCATACTGCTGCTCGGATGCC 1450 37 78.4 51 T...T..........AG...........AG....GG. CGTGGATCGCAACAACGTCGACCTCGCCAACAGCTCCCGCGTGTGCCGCAT 1362 37 86.5 39 ..............G.G.........A.AG....... GACGACATCTTGTGGGTGCAATTCGCCCGGCGCTGGCGG 1286 37 86.5 38 ......A.......GT..........AA......... AACGGTGGCACCAACGGCGCCACGATCAGCACTGCCAA 1211 37 89.2 35 .G.......C......C.........C.......... AATGCAACCGCCGCGAACGCCGCCTATAACGCCGA G [1191] 1138 37 89.2 39 ...............TG..T...........T..... TCGCCAAGTCGTGCTCGAACAGATCCCGCTGGAGCTCGT 1062 37 89.2 35 ..A...........T.G............G....... CCCGAGGACCTCGGCGGGCTGTACACCTCCGACGA 990 37 83.8 36 ..........T.AC.TG...............A.... CCACATGAAGTACGACGCCTCGTACTGCGCCTTGGG 917 37 81.1 36 ...A..................TT..A.A..TA.... GACACGGACACGGACTTGGCTGTGGCGGTGCACGTG 844 37 83.8 6 A..A.........C..G.........A....T..... TTTGCG Deletion [802] 801 37 89.2 37 ...............TG.........A..G....... CTGCCGGACTGGATCGAGGCGATCACCCTGCCGCTGG 727 37 89.2 36 ..............A......A....A..G....... CCATGACGAATCGCGGGTGTCGCTCGACTCGCGCCG 654 36 89.2 35 ..............G....A....-....G....... CAGCGCTTCAAGGCACTGATGGACGCCGAGCAAAA 583 37 78.4 36 ..........T....TGA.A..A...A.........T CAGAAGGCCCTCAACGCCGTCCGCGTGGGCGGCGGC 510 37 89.2 36 ............TA..G.....A.............. CTACGGTCGATCAAGGACCTCGACCCCAATGCCGAG 437 37 100.0 40 ..................................... CACATCTCGCCGTACGGAGGGAACCTTCGGAGTAGAGGGA 360 37 91.9 36 ..............T.G............G....... TCACTTGGCGAGCAGGGCGGCGCGGTCAACGACAAG 287 37 97.3 37 ................G.................... GTCTGATGCCTGGACTGTTCAACGACCCCGCGAAGCT 213 37 100.0 36 ..................................... TTGTAGGTAGTCGACATACTTGGAGGTAATCGCCAC 140 37 89.2 39 T.....................A.T....G....... CACCTCTCCAGGGCGCGCAGGCGATCCTCATGGCCGGTG 64 37 94.6 0 ................G............G....... | ========== ====== ====== ====== ===================================== =============================================================================================================== ================== 24 37 87.0 43 GTGGCGGTCGCCCTCCAGGGCGGCCGTGGATCGCAAC # Left flank : GCGTAACCCGGACCCGCGAAGACGACAACAAAGAGACCGAAATGGGCGGCAAAAACACCATCGCCTACGGCCTCTACCGCGGAACCGGACACTTCAGTGCCCCCCTGGCCGCCAAAACCGGAGTCACCTCCGAAGACCTGTCCATGCTCTGGCGCGCACTGACCCTGATGTTCGAACACGACCGAGCATCCGGCCGTGCCGAAATCACCCTGCGAGGCCTCTACATCTTCACCCACGCCGACGCCTTCGGCACCGCCCCCGCGCGCACCCTCACTCACATGGTCAAGGTCGAACGCACCATCCCCGATGACCTGCCCATCCGCGACTTCACCAACTACAAAATTACGATTGACGAGAAGTCCATCCCTAACGGCGTGATCTTTACTCGTGCCGTCGGGTGATAAAGTGGAGCTATCGGTTTCACGGAAACCGAAAAGGCGGTCGCACTGCGACCGAGGATCGCAATACTCCCTGGGGTTATTACGGTCTCATCGGTTGGT # Right flank : CTTCCCTCCCAGCGGCATCGTCCTGCAC # Questionable array : NO Score: 4.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:0, 6:0.25, 7:-0.42, 8:1, 9:0.14, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCAGGGCGGCCGTGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-16.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [22-54] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 8364-8694 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIRM01000015.1 Microbispora hainanensis strain DSM 45428 15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 8364 36 77.8 36 .CCGT.C.....G......T..C............. CAAACGGCGGAGCTCATAAAGGGCGTCCGGACGACG G [8378] 8437 36 88.9 37 C.........TT.......T................ GACACCGAGGCGGTCGAGAAGAAAATCAAGCACGTGG 8510 36 100.0 39 .................................... TGGCTCTTGCTCTCCTGAGGCGGGCAGAACACCATGAGG 8585 36 97.2 37 ...........T........................ ACGCTGGACGGGGCGGAGGCCACGCTGGCGCCGGTGG 8658 36 94.4 0 ...............................C...A | A [8689] ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 91.7 38 TGGCGGTCGCCCTCCGGGGCGATCGAGGATCGCAAC # Left flank : TCAAGACAAAGAGAGGGATGCCGAGTAGCGTCTCGACCCACATAAACAGGCGCCGCCCGATCCCTGCTAAGACCCGGACGGCGCCATGGACCTCAAGGGAGATCCATGAGTCAGTAGTATCGTCGAAGTAGCGTTCCTAACGGAACGCCTGAGGTAGCCGTCATCCTGACCCTGAGTGCAATCGCCGGAACAAGCGCCACCCTGGTCGCCGTCGGCCTTCTCGTCCGCGGGCGCCGTCGCGGTCTCCACCGTTGTCGCCCATTTGGGCTGCACCGGAACTTGCCCGCTGTTCGCCATAACGTTCGACTACGGGCGCAGGTCTACGAGGGTCAGTAACCTCCTAGTGGTCCACCACCTCAGATGCCTGGGGTGGTGGACCAACCGAGAGCTCAGCATTCGCAGGCATCCACTTAGACCGAGGTCCTGAGCGGGTACGGAAGTCCTGATTCGGACAATGGCTAATCTGTTGGTCGCCGACCCGGCCCGCGCGATCAAGGCGA # Right flank : AGGAGGCCATGAGGAGGGCAATTACGTCAGCGTGCCGTTCAACCCGGACGATTTGACGAGGCGGGCCCAGCGGGGGCTGCGGTGGAATTTCCTGGCCAGATCAACGGATCGCGGCAGAGTTCCGTCTGGGCGGCGGTTTCGGAGTGCCCACTGCCATGCTTCTTGCTGGAGGGTGCGTCCGCGCGGCCTACCGTCGGCTCGAAGCGCGTCGTCGTCCGATACGGGTTCTGGTAAGGCCGTGGGCTCCTCCGAAGAGAGTCGGCGGGCGACGCTTTGTCGTACCAGCCGGAAGGCCATCTCCAAGCCGCCGATCATCGCGAAGGCCGGCCACGCTGCCACGGCCCGACCGATGATCGATGGTTCGGCGACGGCGACGTTGGCGGCAACGCTGGCGAGGCTGCCGATCACGAGAAGTGTCCAGGGCAGGACTCCGCCGCGCCTCCCGCGCCTCGAATCAGCAAGCAGAGCCATCGAGGCGCAGAGCACCATCCCGTCGACGC # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCGGTCGCCCTCCGGGGCGATCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], //