Array 1 109917-105542 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFGF01000049.1 Acetonema longum DSM 6540 Contig00049, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 109916 32 100.0 34 ................................ CCTGTGTACTGGAATACATTGATCCCGCGTATTA 109850 32 100.0 33 ................................ CGCTTAGTGATGACCACAACATCGTGGTCTATA 109785 32 100.0 33 ................................ CATTCCCAGGGTTTTAAGGCTGTCGTCAACGCA 109720 32 100.0 36 ................................ TGTAAAATGATCTCCGCGACGCTCCGTCTTTGGCCC 109652 32 100.0 34 ................................ CTATCGGAAAGGCCATGCTGGATTTGGGGCCGGC 109586 32 100.0 35 ................................ CGTTGACGCTGTCGATGATCAACTTTTTCCCGGCC 109519 32 100.0 33 ................................ CTCCTAATATTTAATACTCATTCCATCGTGCCG 109454 32 100.0 33 ................................ CCTGGAAGGTAAGGCGATTAGAATAAAAATAAT 109389 32 100.0 36 ................................ AAAAAACGTATCGGCCGCTCACCTGGCAAGATGGAT 109321 32 100.0 34 ................................ CCGGTTTTCTTTAGTTTTCCGTATCTTTTTTCTG 109255 32 100.0 35 ................................ CCAATCAACCGAAAATTGGAGGAAGGTATAATGAT 109188 32 100.0 33 ................................ GGTATCATCATTTCAGTACCCCTGTCACCCGCC 109123 32 100.0 34 ................................ GCCTAAGATTAATTAGTTTTATCAAGTAGATTGC 109057 32 100.0 34 ................................ TCGAAGATATTGGAGTAAAGCCAGGCATAGCGAA 108991 32 100.0 35 ................................ TTCTAATAAAATTCCTCTGCGTTCGCCGCTGAACC 108924 32 100.0 33 ................................ ATAGATGAGGTGCTGTATACTGCAAACGAAGTT 108859 32 100.0 33 ................................ AAGCAAATAAGCGAAATAAAAAAATCCGCACTG 108794 32 100.0 33 ................................ TCGAAGATATTGGAGTAAAGCCAGGCATAGCGA 108729 32 100.0 33 ................................ CAGCTCATCCATGGTCACGGTAAGTCCGCTGAC 108664 32 100.0 35 ................................ TGGCAGAGTACCTTGCCTTGCTTGAACAAGAACGG 108597 32 100.0 33 ................................ GCTGATGTATCTGGATTTGTTGGCCCTGGGTCG 108532 32 100.0 37 ................................ ACAAATTTAGGAAGCTTAATATCGAATGCCATGGGAG 108463 32 100.0 34 ................................ GAAAAAATGGGTCTGACATCCGGCGGTGGACGGG 108397 32 100.0 32 ................................ TTTTTACCATCCGCATATTCTTTGAGAATTTC 108333 32 100.0 34 ................................ ATCACAATGAACACCTCCTTAACTCGGCCAACCG 108267 32 100.0 33 ................................ TTACATTGCTGATGAATTGGCACGTTTCAAGGA 108202 32 100.0 32 ................................ CTCATTTTTTAAAGAAGACTGTGTATCCACAG 108138 32 100.0 34 ................................ CGTAAGACATACGGCCAAGGCAATAGCGTTATAC 108072 32 100.0 34 ................................ TAGCCTCTTCAAACTCGAACAAGTCTTTGGGCCG 108006 32 100.0 34 ................................ TTGTCGTTGACGTAGGCTACCATGCGGTTAGTGC 107940 32 100.0 33 ................................ CATTACGACGCTTCGCCTTCCAGCGACATCAGG 107875 32 100.0 33 ................................ AGGACATTAAACAGCTTTTTGCGGTCAACTTCG 107810 32 100.0 33 ................................ ACTCCATGAAGGGGGTGAATTATTCATGATTGA 107745 32 100.0 36 ................................ CGAACGTCCGCCTTTAATTTATGCGATTCTGCCCAT 107677 32 100.0 33 ................................ TCAATCGGACGGGCTTTGATAGCTTGGGCTACA 107612 32 100.0 37 ................................ GATGACGATAGCCAGAGTGCTGGAATCCACCAGGGGG 107543 32 100.0 36 ................................ GCGGCGGAGCAGTGGGCTGACAGGCTTGGAGCGCCG 107475 32 100.0 36 ................................ TGGCGGTGTCGTGAATGCCGGATATAGTGCTTTCTG 107407 32 100.0 34 ................................ AAATACTCTCCCATCCTCCCACCTGATGGAGATC 107341 32 100.0 31 ................................ TGTGGCATTGGTCACATAAACTAATCAAGTT 107278 32 100.0 33 ................................ GTCATGTTAAATCCATTGATAATGCCCTGCAAC 107213 32 100.0 34 ................................ ATATATATAATGAAACATATGTTTTATGAATCAT 107147 32 100.0 33 ................................ CTTTGTCATCTTTACCGCCTCCGCATATTTAAG 107082 32 100.0 33 ................................ AGCATGAACGAATGCATCTGTTTTAGTAGATCA 107017 32 100.0 33 ................................ ATTTTACCGTGCCGGGTATGTAAATACGTTTTA 106952 32 100.0 33 ................................ ATTGGAAAAACCATTGATCCCTACGATGTTTGT 106887 32 100.0 36 ................................ CGGTAAAATACCTCGACTGCAGTGTGGGCATATCGT 106819 32 100.0 34 ................................ ACGTCCTCAATCACCTGGAGCCATTTTGCGGCGT 106753 32 100.0 33 ................................ ATTCCAATAGGCGTAGAACTGTCTTAAAGTCAT 106688 32 100.0 33 ................................ CTTCGCCAGAACTTCAATGACTTGCGCCATCAG 106623 32 100.0 32 ................................ TGATATCAATGGCCGGGGACCAGGATGGTTTT 106559 32 100.0 33 ................................ ATGTGCTTTTGTCGGTCTGTCTGTCACGCTCTC 106494 32 100.0 35 ................................ CTGCATCATCACCACGCCACCCTAAACGGCTTATT 106427 32 100.0 35 ................................ ACAATTTCGGATAATGGCGATTCTTACGGCCAGTC 106360 32 100.0 33 ................................ TACCTGTCGCCGCAGGTCGGCGTTTTCCAGCTT 106295 32 100.0 34 ................................ CTTGCAAAGACCTTCGTTATTTAATACAAAAATA 106229 32 100.0 34 ................................ ATCCGGCAGAGAACCGATCACTGATGCTATTGCC 106163 32 100.0 34 ................................ TGCTAATGAAAAGGTAGCCGCCGAAACCGTTCGC 106097 32 100.0 35 ................................ CAAAGGAAATCCGGAATACGAGTACCGGCAAAAGG 106030 32 100.0 34 ................................ TACTTTCGTTCGTGCAGCTACCCGAAAGTTTTTT 105964 32 96.9 34 ............G................... GTATGATAATTGGAGCATGTCTCGCAGCATGCCC 105898 32 96.9 34 ........A....................... CCCTGGAACTTTGCGCTCAAGAATGTCGTTTTGG 105832 32 100.0 33 ................................ TTCTCAGAATAAGCAACGAAACAAAGTGATTGC 105767 32 100.0 33 ................................ AAAGCCGGGGTGAGGGGTTGTGTCCCGAGTATT 105702 32 96.9 34 .............T.................. CATAGAAAGGCCAGTTGGAACCAGATATGCCTCA 105636 32 93.8 32 .........C...T.................. AGGGAGCCGGGTGGACCACAGCAGTGTGCCCT 105572 31 90.6 0 ........-.....................CA | ========== ====== ====== ====== ================================ ===================================== ================== 67 32 99.6 34 GTCGTGCCCTGTACGGGCACGTGGATTGAAAC # Left flank : CTGGAAGATTATCCGCCATTTTTCTGGAAGTGAGGTCATAGGCATGTTAGTGCTGATTACCTATGATGTGAATGTGACAACCGACTTAGGCAAGAGTCGGCTTCGCCGAGTAGCTAAGCAATGTGTCAATTATGGGCAGCGTGTTCAAAATTCGGTATTTGAATGTTTGGTCGATCCTACACAGTTTGCCGAATTAAAACACCGATTAGAAAGTATTGTCGATCCAAATACTGACAGTTTGCGCTATTATTTTCTGGGAAGCAATTGGAAAAACAGAGTAGAACATTTTGGCGCTAAGGTTGGATATGATCCGGAAGGGGTTTTAATGCTTTGATGCGAACCTTAAGCGAACATTGGAATTCAGGGTAGTTCGCAAGGCGCGTAGATTCAGGGATAATTGATGTTGCGTTAGGTGTAACCGATTTATTTAAGTGAAGGAATTTTTGATTCGCAAAATCATGTGTTTTGATGCATGATTTTAATGTGTCATGAGTTTGACA # Right flank : ACGAAATGATCAAGGATACCATCAAGGAAAACATCATGCCCCATATGGATTGAAACGCCTGTACTGTATAATAATCTGGCTAATCCGTAATATTTAAAACTACGAACTCTATTGAGAGCAAAGAAACAATCTGCTCCTGAAATTCCTTTGTGCAGTTAAACTAAGTTTGCACTGTGCAACTTTTTGGGCAAAGGTTGCTGATAGTCAACTGCGTAGCAATCCAATTCCAGCAGGTCAATAACTATAAAACAACGAAATCATACTATTAAATAATGCAACACCAAAAGGCATCTTTTTGTCGATGCTATTATTCAAACGGTAAAGTGGTTTATACGAAAGGATGAACAATCATGCCTAAGATCCCCAAAAACCTAAGCGATCAGGAAATGGTAAAACATTTTAAAGAAAAAATCACCTTTGAAACCGGCTTAGCACAAGATAGTCCGGAGGATAAAAAGAGCGTTCAGGCCAAGTCAAAAGAGAAGGAGTCTTTTTTTACG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTGCCCTGTACGGGCACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTGCCCTGTACGGGCACGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 121958-119021 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFGF01000049.1 Acetonema longum DSM 6540 Contig00049, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 121957 32 100.0 34 ................................ ATGCGTTTAGCGAAGACTTATCAGAGCATACGGC 121891 32 100.0 33 ................................ GCGTAAGTAAAAACCAGATTATCCACGGCGGCA 121826 32 100.0 35 ................................ CGCTCCTGCTCAACCTGCTCGATATAAGCCAGGAG 121759 32 100.0 34 ................................ TGAACTGGTGGAGGTTGACGAAAATTTTAACATG 121693 32 100.0 34 ................................ AAATGAATACAACTGCCCAACAGCGGTTTATATC 121627 32 100.0 34 ................................ CAGTTATAGGTAATGTTTATTCTTTTTTCCTTCC 121561 32 100.0 33 ................................ CTCTATGATCGACGTAAACTTAAGCGACTATCT 121496 32 100.0 35 ................................ TTATGAAAACTGGGCGATGTCCCGCAGCATGCCTC 121429 32 100.0 36 ................................ CGTTTTGAAAATGAGGTGATCTTATGATCAAACTAC 121361 32 100.0 35 ................................ TATAATAACCGGTGTGGCCGGTGGTGTGGCTGCAG 121294 32 100.0 35 ................................ GTTTTTCCGTTGGCGAATAATCAAACCACCATCCA 121227 32 100.0 36 ................................ GTAGTTATCCCGCTGCAGAATTGCGTCACGTTTATG 121159 32 100.0 35 ................................ CAGTGTGTCAGGCTGCGTCGCCTGCTTGAGCTCCC 121092 32 100.0 34 ................................ GACAACATAAAGAAATACCACCCCAAAGGGCGGC 121026 32 100.0 34 ................................ TATATTTGTGGTCATCCCAACTCCTCTTACGCCA 120960 32 100.0 34 ................................ AATAAGACGAATATCAAGCGGCTTAACAGCTTTG 120894 32 100.0 32 ................................ CTCATGGATAAGCGTACTGCCCAGGTAGGCTC 120830 32 100.0 32 ................................ TCGATACGGATAAGGCGTGGCAGCAGTTTGAC 120766 32 100.0 34 ................................ CTATCATGAGAAAAAACAAGAAAGAGGGGCGAAA 120700 32 100.0 36 ................................ AATATCAATCAGGTGATTATCCCGTGCCTGCAAGGT 120632 32 100.0 35 ................................ GCTGCCTGGAGACGGCAGAAAAGATGGCGACCCTA 120565 32 100.0 36 ................................ TGGCAAGCAGCATTTTTAGTTCAGCAAAGCAGCCAT 120497 32 100.0 33 ................................ CTTTAATCCATTCTAGGTTCAACCCCAGTTTCT 120432 32 100.0 35 ................................ GCATCAAGCCCTCCGGGAAGCATCTGGCCCATCAG 120365 32 100.0 34 ................................ TTCTTTTGAGTATTTGGCGGCATTTACCGCGAAA 120299 32 100.0 32 ................................ CGTGGAGAAAGGCGGCGACAACTCCAGCGTAT 120235 32 100.0 33 ................................ CATCCTGGGCATATTTAGAGTGCACCACAGCAG 120170 32 100.0 34 ................................ ACTGCAGCAGTAGAGGTGATTTATGGGGGCCTGC 120104 32 100.0 34 ................................ CAGCAAGACAACTCATGGGTATGTGCCGATAAGA 120038 32 100.0 32 ................................ TCCAGACTTTGCGCCTGCATAATGCCTTCCGT 119974 32 100.0 35 ................................ AGGTCCTGGACGGCGCTGTTTAAGGCTGTGATTGC 119907 32 100.0 35 ................................ TTCATGTATCGCTACTTCCGCCGCCTGCTCCTTTC 119840 32 100.0 34 ................................ CTATAAAATGGATTTTTGGTATAGCAAAACATAC 119774 32 100.0 34 ................................ TTTTGACCATTTATCATAAACGTTTGCCATCCTT 119708 32 100.0 33 ................................ GGTCATTAGGGCGTAGAGTTCGGGGTCGATGTA 119643 32 100.0 32 ................................ TTGACCATCCAGCCCTTTTCTCCCCCCCTGAT 119579 32 100.0 34 ................................ TTGCAACGGCAAACCGTCTTAAATTAGCGCAGAT 119513 32 96.9 34 ..............A................. AAGAAGATGACCTTTACACCACCTTAACCTATGC 119447 32 100.0 35 ................................ ATAATTTAGGCACACGGGACGTGTTTGTATCTATC 119380 32 100.0 33 ................................ CCGGATATACAAACATCGTTTCCGTAACCGCCT 119315 32 100.0 34 ................................ AATTCTTCGTCCAGTACTCCGCCGCGCACATAAC 119249 32 100.0 34 ................................ GCAACAGACGCGGAAAAAGCGAACTGGAATAGCA 119183 32 100.0 33 ................................ CTTCAAGCGTCTGGACATTACCAACCTGAAACC 119118 32 100.0 34 ................................ ATTGGCGATAAGCCACTAATCGCCGCTGGATAAA 119052 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 45 32 99.9 34 GTCGTGCCCCGTGTGGGCACGTGGATTGAAAC # Left flank : GGTGTTCAGGAGGGCGACAGTTACGACTAAAAGCAACAATTACGTTTTGTGTGGAAAGAATCATCAAGAAAGCACTCGCGACTTTTTAGGGCCGGGAGTGCTTTCTTGTAGAAGTAAAGCGTAGGACTTTTTTGTTCGGGATACAGGAGATTGATGAAGAATATGGAAAAAAGAATATAGAAAATTGTAAAATGTAATGGCGGCAATAACGGGTGGGCGTTAATGAAACTTGAAGAAAAGCATTCTAAATCATTAAAAGTAACTGGAGAAATAAAGTAGAATATTTTGAAGCTAAGGCCGGATATGATCCGAGAGGAGTCTTAATGCTTTGATGCGAACCCCAAGCGAACATTGGAACTCAAGGTAGTTCGCAAGGCGTGTAGTTTACAGGATAATTGATGTTGAGTTAGGTACAAAATGCTTTATTTCAAGTGAATGAACTTTTGATTCGCAAAATCATGTGTTTTGATGCATGATTTTAATGTATCATGAGTTTGACA # Right flank : AGCGACTGGCGACAACTGCCGCTGGCCAGCGATGGTCATCCCCGTGATCAAGGAAAACGGTTGAATTTAGTATAAAAGGGCAGTTTAAAGGTTACTCAGATGGGACAGCAAGGCATACATTGCATATTGTAAGGCATTTGACCAAAATAGTTTAAATGACTAAGAGTCGATTTGGAACAGATTTTTCCAAGAAACAAGTGATTGCGGAAGACTGGGAGAGATAAACGATCTCCCAACCCCGCTTTTCGACGGCCTGACAGAACTAAAAACAGACACGGTTGATTAACCGTGTCTGTTTTTAGTTCTGTGTTAGTTCTTTTTTGAAATACTGATATTACATTCGTTTCAATCCACAGATGTTTCATCTGACAATAGTAATATAGCATAGTTTATCCAAAATCCAAATCAATTATTTCTATATTTCGAATGATATATTATTATTCAAAAAGAAATATTATATATACTTTACAAAAAAGAGGAAGTATAATACAATAATCTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTGCCCCGTGTGGGCACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTGCCCTGTACGGGCACGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.60,-6.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //