Array 1 791384-788479 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWDV01000001.1 Legionella pneumophila subsp. pneumophila strain L05B.1 L05B.1_contig000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 791383 37 100.0 34 ..................................... TAGATATAAAAAGATTAAATCTTCTAGCGCACAT 791312 37 100.0 34 ..................................... TCACTACTCCTGAAGGTTATAATTTTTGCTATAA 791241 37 100.0 36 ..................................... TTCGAATACAATCCTAGTGTCTCTGTGTGAATTAAG 791168 37 100.0 34 ..................................... CAGGCACTGGTTCACTAGACACTGTAACATCTAT 791097 37 100.0 34 ..................................... CTACCAGTTAATCGTAACTCAATCTCTTTTTCAA 791026 37 100.0 34 ..................................... ATAGAATACATAAGTGCAAATTATTAAATGTTAC 790955 37 100.0 34 ..................................... TGAATGTAGAAACCAGATGCCACGAATTATTAGA 790884 37 100.0 35 ..................................... TTTGTATAAACGTTCTGATATGACTTAGGTAATCT 790812 37 100.0 34 ..................................... CTAACCTGATTGCTCAACAAATAATGCTATTGGC 790741 37 100.0 34 ..................................... TCACTTTAGGCCAACGCCGATCCTCCGCTTCGAA 790670 37 100.0 35 ..................................... CTCACATCTTACCCTCAGGGCGGATATTGTGAATC 790598 37 100.0 33 ..................................... ATTAATAATATTTTAGAAGATTGGCACATAATA 790528 37 100.0 34 ..................................... TGACGCAAAGGATTTATTAAAAACGCCTTGTAAT 790457 37 100.0 31 ..................................... ATTTTACCTTTTAACACATATTGATAGGCGT 790389 37 100.0 36 ..................................... TCCATAACTGAAACGTCCTTATGCCTCAACATAATG 790316 37 100.0 36 ..................................... CTATTGCAAGCTAGTTTGATCGTGTTATTATAAGAA 790243 37 100.0 36 ..................................... TGACAAACGTTTGTTTTTTAGACACAACACTAAAAG 790170 37 100.0 35 ..................................... CCTGAAAACCCGCCACAACCCGCGCCAGACTTGAA 790098 37 100.0 34 ..................................... ACCAAGTCGAAACAACATACCGAGACCGTGTTGA 790027 37 100.0 35 ..................................... TACATTGTTACGTTCATTTCACTCAGTTTTTCATA 789955 37 100.0 34 ..................................... AGCAATAACCCAAAGTTTCGCGCGCGTGCGCGGG 789884 37 100.0 37 ..................................... TTATAACATCGGGATGGCGGTTTATTGGTTAAGTAAC 789810 37 100.0 34 ..................................... TTCTTTTTTCAGATTTCATTTCCTTTTCCTTGTG 789739 37 100.0 36 ..................................... TTTTTATCGTAAGCTTGATTAACTAGACATCTACTA 789666 37 100.0 33 ..................................... GTTTTAATTTAATCATTATTGCTTCCTTATTAA 789596 37 100.0 37 ..................................... TAAGATATTGGTCGATTGTTTGCAAGACGTCATCAAA 789522 37 100.0 34 ..................................... CTAAATCAGCAGTCATCAAAACCCATATGATTGT 789451 37 100.0 31 ..................................... TTCTCAGAATGGGAACGTTACACATCATATT 789383 37 100.0 34 ..................................... TTAAGTATACGTTTCTTTGGGCTATTAGTTCTAA 789312 37 100.0 36 ..................................... TTCTCATATTTTAAAACAATAGAGTAATTCATTTTA 789239 37 100.0 35 ..................................... AATCTTAATTTATGCGCCTTACCTTCTGCTTCATC 789167 37 100.0 36 ..................................... TATACTTAGACAATATCATCATTTCCTATGTTTCGA 789094 37 100.0 36 ..................................... GCTATTCCAGATAGGTAGTTGTTTAGAGCATTTTGT 789021 37 100.0 35 ..................................... TTCGATACTCCTTAGCGGTACTTGCTAAAGTAGTT 788949 37 100.0 35 ..................................... AAATAATTCTTGTGACTCACGTGCCGCCATTTGAA 788877 37 100.0 36 ..................................... TAGGAATTGATTGGGGTAACGCCATCGCCATAGAAG 788804 37 100.0 33 ..................................... TTACTTCATGACCCGGACATTTTACTAAAAAAT 788734 37 97.3 34 T.................................... TCCTATACCTTGTCACAATTTCCTCATATGGCTC 788663 37 100.0 36 ..................................... CATAATTGGGAATTGGTGTGAAATGCTCACCGTCCG 788590 37 100.0 38 ..................................... TTAATTGCGCCAGAAACAGCACCATTTATGGTTACAGC 788515 37 86.5 0 .......................TT...T.A.....T | ========== ====== ====== ====== ===================================== ====================================== ================== 41 37 99.6 35 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : TCTTTTGCATCAAAAATTAGTTTAGGTCAAAAGATGCAACTGACCGCCTATGGAATGCTTTCCGAACTGATTTTTGAAAAACCATGTACCAGAGGCTATATTATTACTGGTGAAAAGGCCAAAGCCAAATTAATAAAAATTGACGAAAAATCAAAGTTCAAAGTGATTGAAATTTGTGCTAAAATAAAGAAAATTTTTGGCACAGAAACATTACCATACAGCACTGCTAATGGACTTCAATGCATTCAGTGTGAGTTTCTAAATCACTGTAACGATAGATTTTGAAATCGTTATATGCTCGCTATTAAGACGAGCATAGAAAAACGATTCAATCTTTAATTTTGTTGATTTCAGGGTATCGAAATTTAGATGATTTCTAATTTAATTATTGCCTTCTTTTTCGAAAAATCAAGCCTAAATAATGCAATTTGCTATTTTTCGAAGAAAACCACTTTTAATTCCTCGTGTTTCTTTAAAATAAACAAAGAGTTAAAATTGCC # Right flank : ACTCCATACTTTATTCTCTGTATACTATTATAGTAAAAATCCATGGGGTATTATTTTATATAATTAAACAGAATTTAATTTTGTTGTATTTTAATTTCTTCGACAAACATCAGAAAATATAATCGGTCATTTTTACCAATTATTTGTAAATGTTAGATGCAGTTTTAGGGGCACAATAGGTCATATTTGGTTATATTTGCTTTTTTTCATCTTATTTATTTTATAATTAACTTGATAATTATAAAGTGCTATTTTACTCTGTTGCTTTTTCTGACAATACCTGTCTTTACAGATTATCTTTGTAACAAATTTTCTTAATTTAACCTCAGCTCGATATAAGAATAAGGTTATGTGATTGATGATTCAAAAGCCAAACCGCAAGTCAAATTAGTACGCGGTCAACTTCAAATTATTGCATCAAGGAATATAGAACATAGACGGCAGCTGTTGTCAGATTGGTATAAGCAGAAAGCTTTTGAAGTTTTTAGCAAAAGGTTAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //