Array 1 9257-10021 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRN01000217.1 Methylobacterium indicum strain NS230 contig_217, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9257 29 100.0 32 ............................. CTTGCTCGCGGTCGATAGGGAGTAGGGCGACG 9318 29 100.0 32 ............................. CGGATCGTCGCCGGGTCGATCACCACCGACCG 9379 29 100.0 32 ............................. CAGTTCGTCAGCTCGGTCGCCGTCAGCACCAC 9440 29 100.0 32 ............................. TCCTTCACCGCCTCGCCGATCTTCTCGCGCAT 9501 29 100.0 32 ............................. GGCGTATCAGTGGCAGACCGGTATCGACTGCC 9562 29 100.0 33 ............................. AGGGGTACGCACGACTACGCAGCGGCTAACACG 9624 29 96.6 32 ............................G TCTTCGAGATCCTGGACCCCGAGCGGCTGGCG 9685 29 96.6 32 ............................T TTCGCGCAGAACGCCGACATGTCGTCGGGCAC 9746 29 100.0 32 ............................. CCGGGCAAGGCTGTGGTGCAGGGCGCGCACGC 9807 29 100.0 32 ............................. TTCGGGATGAACCAAGTCGGCGACCCATCGCT 9868 29 96.6 32 ..............G.............. GATCACTGCGGCAGAGGCTCAAGCAATCTGTC 9929 29 96.6 32 .............C............... GCGACCTTCACCAGGATCAACACGCAGCTCGG 9990 29 79.3 0 A.T........C.C...........T..G | G,AT [10002,10014] ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.4 32 GGCTCCCCCGCACTCGCGGGGATCGACCC # Left flank : CCGCATCGAGGCCCTGCCACCACACCGGCCGGCGGCGGGGAAAGCCCTTCACGTCCTCGCGCCGCAGGGGCGGCAGGTGCTCGCCGAAGCGCTGGCGATACGCGGCGTAGAGGTCGTCGCGGTGTCCCGCCTCCTCCTCCGCCATCGCCTCGAACACCCCGGCCGAGCCCGGCAGGTCGGCCCGCAGGCTCTCGGCGAAACTGCGGTAGATGCGGGAATCCTCCTCCTCGCTGGCGATGGCGAGGGCCAGCACCTCGCGTTCGGTGAGATCGGTCAGGGCCTTCACGGGCATGCTCCACTCTGGAATGGCTCCAATCTAGAGATTGGAGCCATTCCAAACAAGGGCTTGCGTGCATCGCACCATCCGGGGCCGGGCGTCGCGCGGACGATGGCCCTCGACGACCGGGCCGGTCTCGGGCATGCTGACACGCCGCCGGTCGCAGATCTTCCCCAACGGCATCTTTGACATCGTGAACGGTATCAGCGATTTAGCTGGTAGA # Right flank : GCCCTGGCATGCGTGCGCTGCCGCACGCCGCTGCCCGCATCTGCGCCCGCGCGGCGGTTGCCTCGCGGGCCCGAACGGAGCATGACGGCGCCCGGATTCGCGCGGGCCCTTGCGTCCCGCGGGTGCGAGGCCGCGCGGGAGGCTTGTCCCGCGCTCCGAAGAGCCCGTCCTCCCGAACGAAGTGCTGCCGATGAGCGTCGTCACCCGCATCGCCCGCAGCCGGGCCGCCCAGGAGAGCCTCGGCTACCTCGGCGCGAGCTACCTGAAGCTGGTGCAGGGCACGAACCGCTTCAGCCTCGATCCGCCCGGCGCCTACGACTGGCTCACGCCGCTGCGGCCCTTCATCATCGCGATGTGGCACGGCCAGCACCTGATGGTGCCGTTCGTGCGCCGGCCGCAGGACCGGGCCGCCACCATGGTGTCGCGCTCGGTCGACGGCGGGGTGAACACCGCCGTCCTGGAGCGGATGGGCGTGCGGGTCATCCGCGGCTCGGGCGCGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACTCGCGGGGATCGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 1787-111 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRN01000066.1 Methylobacterium indicum strain NS230 contig_66, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1786 29 96.6 32 ............................T CAATACATGGCCTCGATCGGCCTGACCACGCA 1725 29 100.0 32 ............................. TCGACCATCGCCTCGAGGTGATCGCCGACGAT 1664 29 100.0 32 ............................. AAGCGTCAGCGTCGTGTTGACGTTGACGATCG 1603 29 100.0 32 ............................. TTGCCCGAGTTGATGACCGAGCCCGCCTCGAT 1542 29 100.0 32 ............................. CGGTACGTCGGCAATGGCGATCAACAGGTGTC 1481 29 100.0 32 ............................. AAGACTATGCCGCCGGCTCAGGATGCCGCGCC 1420 29 100.0 32 ............................. AAAGCACCGTGCTCGCCCGCGCCAAGTCGGCG 1359 29 100.0 32 ............................. AGGATGGCCGCAGCCACGTCGGGGTGCATCGC 1298 29 100.0 32 ............................. ATTCTGATGCGCCGCTTTTCCCGCCGCCTCGC 1237 29 100.0 32 ............................. CGGAGAACAGCCATGAACGCCCAGACCGCCGC 1176 29 100.0 32 ............................. TCAGGGCCGCCACAGCCGCGTCGTTCGCCGCC 1115 29 100.0 32 ............................. GGGCATCGCTCCGGCCGCCTCGTAGAGCACTC 1054 29 100.0 32 ............................. CGCCAGATGATCGGGGTAGACGGACCGCTGGA 993 29 100.0 32 ............................. TCCGGTAATTTAGGCGAGAGGGGGACGGGCGG 932 29 100.0 32 ............................. TTGTCCGAGGACGAATTTCGGGCGCTAAGCAG 871 29 96.6 32 ............................T CGTGCGCTTCGCTTGCGTGGGCGATCCGGCCC 810 29 100.0 32 ............................. TACTGCCAGATGAGCGTCGGCAGCGGCGGCCT 749 29 100.0 32 ............................. CGCGAGGCCGGCGCCTCCCCGGGCTGGGCCGC 688 29 100.0 32 ............................. ATGCCGGCCAACCCGGTCATGCGGTTCTGCAC 627 29 100.0 32 ............................. GTCACGACCTTCTCCTGGACCGAGGAGTTCGA 566 29 100.0 32 ............................. GCCTCTACACGGGGCATCCCCGGCCCCTCACC 505 29 100.0 32 ............................. ATGACGGAGGACGCCCAGTCGGCCCTCACGAT 444 29 96.6 32 ............................T TCCGTGACGGCCGGCAAGGTGGACGCGGGCGC 383 29 100.0 32 ............................. TCGCTCGCAAGCGTCGTGACCGGACGCTCTCG 322 29 96.6 32 ............................G TGATTTCCGACCCGGAGTGAGGCGCACCAGTC 261 29 96.6 32 .........................G... GCGCGCCTCGCCGCCTGGGATGGCGTGCTGGC 200 29 96.6 32 ........T.................... AACCTCCCGAGCCGCGAAGACGTGCTCCGGCA 139 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.3 32 GGCTCCCCCGCATCCGCGGGGATCGACCC # Left flank : ATCCCGGGTCTGATCGACGCGATCAAGTCCGTCCTGGTGCCTCGGGAGCGGGACGACGCCCCCCAGGCGGAGGTCGGTTCGACGACCGACCCCGAGCCGACGTGAACGCGACGAGGAGAGGGGCATGCCGCTCTGCGTGGTCGTCACCCGCGATGTCGAGGATCGCTACCGGGGCTTCCTGGGATCCGCCATGCTGGAGCTGGCCCCCGGTGTCTACGCCTACCCGCGCATGAGCGCGGGCGTGCGCGATCGTGTCTGGACCGTGCTGTCGGACTGGTACGGCCAGCTCGGCCGTGGCAGCATCGTGATGACCTGGGCGGACACGTCTGCGGCAGGCGCGCTCGGCGTTCGCACGCTCGGCTCGCCGCCCAAGGAGGTGATCGCCCATGAGGGCGTCCTTCTCACCCGCCGTCCGCTGGGCCGCGGAGCGGGGATACCGCCCCTGGCCCAGGAGACGAGCTCTTTGATAAGTGAATGATGTCAGTATATTGACTGGCAGA # Right flank : CCGTGAGATCAACGTCGTCGGGATCGACCTGAGGGCTTCTCCGAGGGCGTGGACGTCATCAAGACTCCTCTGCACCGCGGGCTGGCTCTTATACACACACGACCCAGCCGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCATCCGCGGGGATCGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //