Array 1 114646-113355 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDD01000003.1 Pasteurella multocida subsp. multocida strain ATCC 1702 ZB100002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 114645 36 100.0 30 .................................... TAAACGCGGTTCGCGATCATTTGCTGATTT 114579 36 100.0 30 .................................... TGACTTAACAGCATTTCTCCATGAGTTGAC 114513 36 100.0 30 .................................... TACCAACCTTAACTGTATCAATCCATTTAT 114447 36 100.0 30 .................................... CCTAAAGCTTTACCATATATTAAACAAATG 114381 36 100.0 30 .................................... TTTAGAACTGCGATCTTGATAAAGCCATTT 114315 36 100.0 30 .................................... TTGATGATTGGCATTTCGACGCGCATTTCC 114249 36 100.0 30 .................................... AAAATGGGGCGTTATAACAACTCGGTTGTT 114183 36 100.0 30 .................................... GTGTAGTGGTCATTTGTCAAGGTGAAAAGC 114117 36 100.0 30 .................................... TTAATAAAGTAATTATGTGCCGTTAATCCA 114051 36 100.0 30 .................................... CTTATCCTATGCGTCTTCTCAGCTTTCCAC 113985 36 100.0 30 .................................... TTATCCATGACGGAAGGGGCTACTTCTGTA 113919 36 100.0 30 .................................... ATCACACCGACGCAGATGGTGTGGCAACAG 113853 36 100.0 30 .................................... TTATTTGTCTAGCATAAACGTTGTTAGTTC 113787 36 100.0 30 .................................... AAAATTCTGATAAATAAGTAACGTCGCGAT 113721 36 100.0 30 .................................... GAGCGAAAGTTGGATCGACAAAAACACGAC 113655 36 100.0 31 .................................... ATAATTAAATTGCAATATATATTACAATTTA 113588 36 100.0 30 .................................... TTAAGTGAATTTGTTAAGAAATATAGAGTA 113522 36 100.0 30 .................................... TAATCTGGGGTAAAAACTATCCACGTCTAT 113456 36 100.0 30 .................................... CTCGCAATCGAGCGTTATCAAGTTATCAAT 113390 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : TAGATAAAAATAATCCAAGTAATGAAGAAGTTAGATATGGCTATGTGAAAAAAGAGGGATTTAATAAAGCAATACATGACAGCTTCAAAGATGTATCAACCAATATAGAAAAACAAAATAATAGAATCTATGATGATAAGAAATAGGAGAATTTTATATGTTAAAGAAATTAATCCTTTTCATGAAAAAATTGAGCTTGTTCTTAGATAAATTAAATGAAGAACAAAAGAAATTGAACCAAAAAGAAAAACCTCAATTTATCCGTACGAATATAAATGGATTGCCATTAAATAGACATGGCGTTGATATGGAGGGAAATATCTATGGTACAACAAGTAGTGAGGAAGAATAAAAAATTATCAACATACTGAACCCAAAAAACATGAAAATTAGAGAATAAATGATTTGATAGATAGGTTAGAAAATGAGCTTTAACGCAAAAAATATGACACAGGGCGGTCAAGTTATTAAATACATGATCGGTATGTTCATGCAGATTA # Right flank : TGTTTCTGCCCTTATCCCTTATAACACAAGGGATAAGGGCATTTTTAATACTCAAAAATTACTTAAATTTACGATATTTAGTAGTCTATTTTTAGAAATTTTTTCTTAAAAAAACAATTGATTTTGTCTAATAGAGATAGCATCTGTTGTATGTTCCCCCTGTTTCTGAGTCACTCTAGGCTAGAATATAGAATAGTCTTTTCGTTTATTTTTATAGAGTATATAAATAGTCTACTTAGAAAAGTAGCATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTTTCAACTTCCCTAATAGAATTTTCATACCTGCAAATTGTTTTTCAGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 108814-114004 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDD01000001.1 Pasteurella multocida subsp. multocida strain ATCC 1702 ZB100000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 108814 28 96.4 32 ............G............... TCTCCGATATAAGTCGAACAAAGTGCGTTATG 108874 28 100.0 32 ............................ CGCAGGGTGAGCCGCTTTTATCAACAATAGAT 108934 28 100.0 32 ............................ ACAAAAAATCCGAAAAAAGATAAATGCAGTTG 108994 28 100.0 32 ............................ GCTTTTATCAACAATAGATCGTCAAACACAGA 109054 28 100.0 32 ............................ TTGCCCAACTGATGAAAGCTCGCTAGATGACT 109114 28 100.0 32 ............................ TTTAACTGCTCGCATCGCTTTAATTGCAGTCC 109174 28 100.0 32 ............................ GTAAATGCGATATTTTGCGTTTAGATGAATTT 109234 28 100.0 32 ............................ AAGACAGATCAATTCAAATTTGGAGTGAATTC 109294 28 100.0 32 ............................ AAATTGGGTAACAGTCACATTCGGGGTGACCT 109354 28 100.0 32 ............................ AACAATGCAAGGTTTTGTTACTCGTCAAGTAT 109414 28 100.0 32 ............................ ATTTCACTTAAATCTTGTTGTAATGCTTGCAC 109474 28 100.0 32 ............................ TATTTAATCCAACAAGCCACTTGATTGTGGCT 109534 28 100.0 32 ............................ ATCATAATTGAGCCGAAAAATAAAGAATAAAT 109594 28 100.0 32 ............................ GATGGGCTTTAGAATAACCAAAGATGTGAAAG 109654 28 100.0 32 ............................ TACAGTTAAGAATGGCGCGATTGATTTAAAAA 109714 28 100.0 32 ............................ TACAATTGAATTAAAATAAAATAAAAAGGTAG 109774 28 100.0 32 ............................ ATACGAATTAATGAACCTGAAATTCTAATACT 109834 28 100.0 32 ............................ TACTGGAAAGGTTACGGCTTGCAATGCTTTTC 109894 28 100.0 32 ............................ GCTCACTAAAGATGTAGCTTTCAACGCAAAAT 109954 28 100.0 32 ............................ GATGTGGTCGATAATTTGTTGCACAAACTCTT 110014 28 100.0 32 ............................ ATGCGAAACAAGGCCAGTATAACAGAAAATAT 110074 28 100.0 32 ............................ ACACAAGAAAGCTTGATTAAACGCTATACCGC 110134 28 100.0 32 ............................ AATTTGTTTAATCGCCGTTTCTACCTCTTCAC 110194 28 100.0 32 ............................ TGTTGCCAGTCTTACAATTAAGTTGTCTTGAT 110254 28 100.0 32 ............................ ATATCCCGATTAATCCGTATCGTGCAGAAATC 110314 28 100.0 32 ............................ GTATTAATGCTACAGACAGAGAGCGGATTATT 110374 28 100.0 32 ............................ ATATCGAATGACTGCAACAGATGTAATAAATA 110434 28 100.0 32 ............................ AGCCGTTGTTTTTTTGAAATTCAACAATCTCT 110494 28 100.0 32 ............................ ATTTGATGTTCAAGAGGGCGTTTTGCTTTTGT 110554 28 100.0 32 ............................ CCGAGCATAAAGCCAGATTTTCACATTGAAGA 110614 28 100.0 32 ............................ ATTAAATAGTCAGCTTTAGGGAAATTAACATC 110674 28 100.0 32 ............................ ATATTTCATCCATTCGCAAACTCCGCCAAATT 110734 28 100.0 32 ............................ AAGCTTGATAACGCTTAAAATAAACGAGTTCT 110794 28 100.0 32 ............................ GTGTTGAAGGTGGTGCAGCGGTCGATAACGAG 110854 28 100.0 32 ............................ ATTGCTTGTTTTGAAAGAATTAGGTGGATGGG 110914 28 100.0 32 ............................ AGAACCAGTGCCAGAATCACCAGAACCAGTGC 110974 28 100.0 32 ............................ ACGTTTTATCAAGGATAGAGTAGAAACTACTT 111034 28 100.0 32 ............................ TCCATAGTTGTCATTAAGGATATTCCCAACAG 111094 28 100.0 32 ............................ TAGTTTCGGTTTGTTATCGTTACAATAACTAC 111154 28 100.0 33 ............................ CAACTGGTCTGACCACTATTCCCACAAAACTTT 111215 28 100.0 32 ............................ CATGAGCCTCATTTATTAATTAAGTACATTAT 111275 28 96.4 32 .........A.................. GATCGGTGAAAAAATCGGGCGTGATTTCGAAA 111335 28 100.0 32 ............................ GATCGGTGAAAAAATCGGGCGTGATTTCGAAA 111395 28 100.0 32 ............................ TCGCTTTGTCGACAAGCCTAATACGTTATTTG 111455 28 100.0 32 ............................ ACAAATTACAATCACAAAGAAAAGCGGGGATA 111515 28 100.0 32 ............................ GCTGTCGGTGATGTTGTGTGTCACGCTTGTGA 111575 28 100.0 32 ............................ AGAAAGTCTTTGTTGCTAAATGTACACAGCAA 111635 28 100.0 32 ............................ TCTACTATCTACCTCTAGTCACACCAACAGAC 111695 28 100.0 32 ............................ ATAAATTAGTCATAGGAATACGCTACGGGAAA 111755 28 100.0 32 ............................ TTTTGTAGCAGAAAGCGCACTTAACTTTTCTT 111815 28 100.0 32 ............................ AGTATCAGCTCGTCTTTTTGCGCTTCTGGAAT 111875 28 100.0 32 ............................ TTACCAGAGCCAAAAATCACGGTTTTAACAGC 111935 28 100.0 32 ............................ TAAAAATATTTTAGAAATTGCCACCGCACTTG 111995 28 100.0 32 ............................ CTTGGCACTGGCTTTCTTTCAACATTGCACAA 112055 28 100.0 32 ............................ TTATTCTGTTTTCGGTGTCCGTGGAAGCGGTT 112115 28 100.0 32 ............................ AAAAGCAAGTCTTGCGCACTGAATCATCGCTT 112175 28 100.0 32 ............................ TTTCAAATCAGTAACTTACGGCTTTTTTGTTT 112235 28 100.0 32 ............................ GATAAGTGGTGGAATAACGGGGAACTCGTGGA 112295 28 100.0 32 ............................ AATAATAATGTTTCATCATTTTGGCTAATACC 112355 28 100.0 32 ............................ ACAACATAATCATCCAGCTTATGCGTGGGTCA 112415 28 96.4 32 ............G............... AGATTTATATAATGCTAATAATTACGGATGGC 112475 28 96.4 32 ............G............... AAGTTGGTTTGTATATGCCAATGATGAAGTTA 112535 28 96.4 32 ............G............... CAACGTTGCCACGCACGAGGGGAAACATTTCC 112595 28 96.4 32 ............G............... TTTAAATTATTTGAAACTAAAATAAAAAGAAT 112655 28 96.4 32 ............G............... ACAAGCGCGCACAACATTCTCTAGTTATAAGG 112715 28 96.4 32 ............G............... TCAACCAATCGATACATCCACAGAATACAGAA 112775 28 96.4 32 ............G............... TTTTCAAACATTTGAGCGTGAAAGCAGTTGGC 112835 28 96.4 32 ............G............... GTCGTGGTCGCTCAATTCTAAGTCTAACAAAT 112895 28 96.4 32 ............G............... GAAATGTATCGGCGTGGGCGAGAAAGTGGCGC 112955 28 96.4 32 ............G............... AATAAGCCCAAGAACGTTGGGTAACTCCACCA 113015 28 96.4 32 ............G............... CGTGCGTCCAGTTATGCACGCCCACTTTCAAT 113075 28 96.4 32 ............G............... TACTGGTATTTCTGCACAAATTACCAAAATGA 113135 28 96.4 33 ............G............... AAAAAATGGCACTAGTACCAGTACCAAAAAACC 113196 28 96.4 33 ............G............... AGTAAACGAAATAGCTGATAAAAACTGCGTTTT 113257 28 96.4 32 ............G............... ATCTTTACTGAAAATCTAAACTACTCAGAACA 113317 28 96.4 32 ............G............... ATCAGTTTTTCTTATACTGATGCAGAAGGGAA 113377 28 96.4 32 ............G............... TAAATACGTTTTTAATTGGTTACGCCATCGCT 113437 28 100.0 33 ............................ TGAAATGTATTCCGCTTTTTCCATCCAACCTGC 113498 28 100.0 32 ............................ GCATCCTTTCCCGCTAATAGGTTTACCGTAAA 113558 28 100.0 32 ............................ TAGTTTGATCACAACTAACCGTTGACCTTTAT 113618 28 100.0 32 ............................ ATTCTTGTGGCTTACCAATGACTTCTGCTGGT 113678 28 100.0 32 ............................ GCTACCGTTTAAGCAAGTACCACGCATTTTAA 113738 28 100.0 32 ............................ AACAGTGCGGAAATTCTTCAATTCACTAAAAC 113798 28 100.0 32 ............................ AGCGGTCAATGCTTCCACCACTTGATAAATAC 113858 28 100.0 32 ............................ GTATTCAGCAAAATTTAACTCAGGAATGAGAC 113918 28 100.0 32 ............................ TTGGATGGGACAATTCGTCCAGCGACAGATCT 113978 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 87 28 99.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCGGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACTTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCAGCCTGTTAGCTTATATTGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCTTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 175972-173662 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDD01000004.1 Pasteurella multocida subsp. multocida strain ATCC 1702 ZB100003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 175971 28 100.0 32 ............................ ATACTGTACAGACACGCCGTCAAACTGGCGAT 175911 28 100.0 32 ............................ ACCGGCTCTCGATTCTTCAGCAAGAACACTAT 175851 28 100.0 32 ............................ CAAGTTTTCTGAATACGTCACGATGTCAGCAC 175791 28 100.0 32 ............................ TTTGCCGTGCCGGTGATTTGATTTGTTTAGAT 175731 28 100.0 32 ............................ GGGCGATGTTATTCGCGTAGCAGACTGTGATT 175671 28 100.0 32 ............................ AAAATCCTGTTCTATTGCTAGCCAATCAATGT 175611 28 100.0 32 ............................ ACTCGCCCAACGCATAGCATAATAAGCAGTAG 175551 28 100.0 32 ............................ TGCAAAGAATGAAGAAGTACCATAAAAAGACA 175491 28 100.0 32 ............................ ATTGAGGCAGAGTTGGAATATACTCACTATCA 175431 28 100.0 32 ............................ GCCCAGCTTAAAAACTGGGCTTTTTTAACTCT 175371 28 100.0 33 ............................ AGGAATAACATGGGTGATTTCCCCTAAATTCTC 175310 28 100.0 32 ............................ TTGTTTCGCATGGGACTTTCTCTTTAGTGAAT 175250 28 100.0 32 ............................ TGTAAATAAACCCAATAAAGATGATTCTTTTG 175190 28 100.0 32 ............................ TTTAATTCTCATTGTTGACTTTGCAACACCTT 175130 28 100.0 33 ............................ AGAGCTTTCTAAAATTCAACTTGTGACAACTTC 175069 28 100.0 32 ............................ ATAGCCATTAATCTTTGTTGAGTGGTGTGATA 175009 28 100.0 32 ............................ TCAATATTTGTCACAATACGACGACCACGCTT 174949 28 100.0 32 ............................ TTTTGAAATGAGCGGTAAAGATCTAGCTGGAC 174889 28 100.0 32 ............................ ATATCAAACACCCCACTAGTTAATAAAAGGCA 174829 28 100.0 32 ............................ GGTAAAAATATCTCGAGCAAAATAGAAATAAT 174769 28 100.0 32 ............................ ATATAAACAGGTTAAAGGGAAAAGCCCTTAAG 174709 28 100.0 32 ............................ TTTACGGCCACCTTCCATAGCCCACTCACGTG 174649 28 100.0 32 ............................ TTAATTTTCAAATCTGTTAAGTAATAAAAAAC 174589 28 100.0 32 ............................ TTAAATTGAGATTGATATTACTCTTAAATTTT 174529 28 100.0 32 ............................ ACGGGTAATTGTTATAACAAAAGGTTTTGACA 174469 28 100.0 32 ............................ TTCTGATGCATTGATTAAAGTTCAACAGAAAA 174409 28 100.0 32 ............................ GTTTGGAAAACGAAGAGGTCAATATCTTGCAT 174349 28 100.0 32 ............................ TTATTCTTTTATTAATGGGCGAGGAAGCGGTT 174289 28 100.0 32 ............................ GAAGTATGCCGTAGAATTGCAGTTGTTGGACG 174229 28 100.0 32 ............................ TGTACAAACCTTGGTGTTGGATTTGTTACCAC 174169 28 100.0 32 ............................ CCACTTTCTACGCCCGCTATTTTTTTTATAAA 174109 28 100.0 32 ............................ TTACCAAGACTCGGGTCAAGTGCGCCGAAATA 174049 28 100.0 32 ............................ ACTTCGTTTTCGAATTTATCAAACATGGCCGC 173989 28 100.0 32 ............................ GACCGAGTTTACCAGCAAGGCGACGTGGTCAA 173929 28 100.0 32 ............................ AATTCAACGCGGTGATCAAGAGATTAAAGAAA 173869 28 100.0 32 ............................ ATATTTCTAATTCAGTATCAACTAATGCGTTT 173809 28 100.0 32 ............................ CAAGACGTTTAATATCAGCTTTACTGTGACTG 173749 28 100.0 32 ............................ CACTTCACACGCGACAAATTGAACAATTATTA 173689 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAGCACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAACGCAACCGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAACAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //