Array 1 560-1058 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYR01000065.1 Lactobacillus sp. UMNPBX19 NODE_65_length_1784_cov_54.4199, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 560 36 100.0 30 .................................... AAATACTTGTGTGCCAAATGTGCGCCAACT 626 36 100.0 31 .................................... TCTACCAGCCGCTTAATGCTACATTCAAGCA 693 36 100.0 30 .................................... CAATTCTTCCAAAAATTAAAACTAGAGAAA 759 36 100.0 30 .................................... ATACATTCCCAATTCTGAATGCTGGCGAAA 825 36 100.0 30 .................................... TCGTGCAAGTATTCAAGCTAACTATGATGG 891 36 100.0 30 .................................... CAATCAAGTTACAAATGTCATGAATACGGC 957 36 100.0 30 .................................... AGAGCTATTGTTGCTCCGGAAGATGATAAT 1023 36 83.3 0 ..........................A.A..GC.GG | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 97.9 30 GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Left flank : CTAAAAATATTTTAGATAAATATATACCTCTTATAATAAAAAAATATATCGAAAATTTAGATGAAGATAATCGAAATAAGATAATAAAAGCATATTATAATTTAGAATCTTTAGTTCAGGATTCGTTATTTTTAGAAGATTTACCGCTAGAACTTGATTTTAGTGAAGATTTAAAGAAGTTTCTAAAATTAGAAAATTTGCATTTAGATTCTAAGTTTTTAAAAGAGCCCTATGCTATAATTGAATCGATCTTAAGAATCCATCAAACATGTAATTTGAAGACTGTGCCAGTTGTCTGTAATGTCGCTCATTATTTAGATAGAACACAGTTAAACATGTTGAACAATTTACTAAAGTCAATGAAATTGAAAATGATTTTAATAGAATTCACATCTAAGGATGTTCTGGTTTATCCGAAAGATGCTGATTACTTCTACATTGATCAGGACCTTGTTGATTGGTACTGACAGCTATCATTAAAAGATAATTATAAATTATCG # Right flank : GGCTCAAGACCAAGTAACTAGTTTTAACTAGTTGTTAGATCAAAATATTTACTCTTTATAAAAATCATTAGTATTAATTAAAAATATTAATGGCTTTTTGCTTTATTGAATTTGGAGATCTTATCTAAATTACCATTTTCTTTTGCTTCTAAGTAATTAAAATATTCTTCAGAGAACTTACTGTCTGTTAGCCAGACCATGTTATCGTTCCTTTTGGTTTTATTTTTGGTCAAAATACACACCTTCAATAATTTAACTATTATTAATTAAAATTTCTGGTTTTAAAAGGACAATAGAACAGAAAAAATGAGAAATCTAAGATTTAAAAAGGATGATTTTCTATTCATTAGAACAACATATCCTAGTTTATTTATTAAATTTAAGAATAGTTATGAAGAAAATGGAATTGTTAATGTACCTATGCAAAATGAAAGGGATTATGATTATTACTTTGATATAGTTGGGGATTATATAGCTACCTCATTGAATGAAGCGTGGGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 76663-74250 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYR01000004.1 Lactobacillus sp. UMNPBX19 NODE_4_length_91221_cov_104.431, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 76662 29 100.0 32 ............................. CTAAATTCAAAGCTAGGATCACTTAAAGTTAA 76601 29 100.0 32 ............................. AGATTATCTGCGTTAGAAGATCAGAAAAAGGA 76540 29 100.0 32 ............................. AAATCTCAAACCATAAGGTAGTAATTTAGTTC 76479 29 96.6 32 ............................C AGCATTCTTAGTCTGTTTCATAGTAGTAACCG 76418 29 100.0 32 ............................. ACCATCGTTTTGAAATTGGGGAATAGTCCCTT 76357 29 100.0 32 ............................. AATTAGCTTCAACAGCAGGATCGCCACCACCA 76296 29 100.0 33 ............................. CATCATCTGAACTCGTACTAATAAATTTGATCA 76234 29 100.0 32 ............................. AAATGCCTTTGATGGACTTACATAGGTAAATT 76173 29 100.0 32 ............................. ATCAACGCTATTCCTTTTGATTTCTAGAGAAT 76112 29 100.0 32 ............................. ATTTTTTCTTTTTTGTTTGTGTCGCACTGCCA 76051 29 100.0 32 ............................. TATTCTTCTCCTTATTATTAATTATTAAAATA 75990 29 100.0 32 ............................. TAGTTTTGGATACTTTATATCTACTCTTTATA 75929 29 100.0 32 ............................. TTAAATGATAGTTATGGTGAGGCTTTTGGTGG 75868 29 96.6 32 ............................C CAACTCCTAAGACTTGGACAGATGTTCAAGGA 75807 29 100.0 32 ............................. ATCCTTATCAGGATTTTTTATAGGTGTAGTTT 75746 29 96.6 32 ............................C AGCCCAGAAACTCGATTCACGTTTTGCATTTG 75685 29 100.0 33 ............................. GAAACAAGCTCAAGCTATTGCAGATACAGTAGA 75623 29 100.0 32 ............................. GAATTTGATTTTGTTAAGTTGTGTAGACAAAA 75562 29 100.0 32 ............................. AGAAAACGTGAACAAACTTATTAAGACTTTAA 75501 29 100.0 32 ............................. TAAGAGAAGTAAAGAAGTAGGAGGTAAGTAGA 75440 29 100.0 32 ............................. TTCATCTGGGTCTAAGCGGAATAATGGTAATT 75379 29 100.0 35 ............................. CAAGCAGAGGCTGAATACGGAATTGGTGGTTTAGT 75315 29 100.0 32 ............................. GGAACTGATGAACTCTACTTTATAAGGTAATT 75254 29 96.6 32 ............................C AGAAAAACCAATTCACACTATAGACCAACTTC 75193 29 100.0 32 ............................. AATATCTGATAGTTCTTCCTGATCAGCACGAT 75132 29 100.0 32 ............................. AAGCGACTTACGAAGTTGAATGCTGAAAAAGA 75071 29 100.0 32 ............................. TGCATGTTCAAAGTAGGTCTGCGTCTTAGCTG 75010 29 100.0 32 ............................. GAACGATCAGCGAATTGATATGCTGATGTGTT 74949 29 100.0 32 ............................. AAAAGAGACGTTGCCTGGCAATACAGTACGTC 74888 29 96.6 32 ............................C TTGTGCCTGATTTAGATCTTGGAGACATGACT 74827 29 100.0 32 ............................. TAAAACATCTTTTCTGAAATTTAAAAGTTCTA 74766 29 96.6 32 ............................C AAGAATAGTATTTGGGAACAATGGAATAATGA 74705 29 100.0 32 ............................. GAAAGGCACACGTCCGAAATTATGTTTCAGAG 74644 29 100.0 32 ............................. AAAATTAACGCTGTTAAAAAAGAAGGCAAAAG 74583 29 100.0 32 ............................. ATCCTGAAATACAGTAACAATTCCTGAAAAAG 74522 29 100.0 32 ............................. ATACACCTTGAAAACTACCGTTCAAGTATAAG 74461 29 100.0 32 ............................. GAATGGCTTGAAGGGCAATATTCGTAAAGCCA 74400 29 100.0 32 ............................. GAACACAATAAAGCGAACTCTTATCCTAGAGT 74339 29 100.0 32 ............................. ATACCTTGTCATACAGTATGTTTGCGTTTTAT 74278 29 89.7 0 .....................C..C.T.. | ========== ====== ====== ====== ============================= =================================== ================== 40 29 99.2 32 GTATTCTCCACGTATGTGGAGATGATCCT # Left flank : AAGAATGGAAAAGTTGATGTATTTTATAAATTAATTAGGGATGTAAACTGTATTCCGGCCGATGTAAGTGAATTAACAGGTTTGAATATGAAGATATTAAAATCGAAAGGAAGTAATTTAATCGAAGTTTTAAAAATGCTAAAAGACTTTCTTGGAGATCGAATTTTATTAGGTTACAATTTAACATTTGATATTAGTTTTTTGGATATAGCCTATAAAAGAAATAAGATTTCTGGGTTAATTAATACTTCTAAAGATTTACTTCCGATAATTAAAAAGAATAATAAATTTCTTGATAATTATAAGTTGAGTACAGTATTGTCTGAATATAAAATTGAAAATCAAAATCCACATCATGCAGATTTTGATGCAAAATGTACGTATCAATTGGCCTTGAAGTTGATTAATGAGGGAAAATTAAAGCTTTAAAGTTTGGTAAAAGTAATGTATTTGGACGATTGCATCTTTTTAAAATGCTGCTATCATAGGATTCTTTTAGT # Right flank : GATGCCCCCAAGTATGAAGATTTTGCAGCGCCTTGGTGTTGGCAAAATTACTAACTCGTATTATCCAGTAAATAAAAAATGCCACATCATTCAAAACATACTATATCTATACAATCCTATGTTAATCAGTTGAATGACTTGATAGTTCATATTAGTTGATTTATATAAAAAATATCAAGAGAGAAAAAATATGACACCATCAATTGACTAAAGGCCAATAGGATTTGCTACAATAAATGAAGGGACAAGTGAACGTAGTTTATTAGAAAGAAGAACAATGGCACTATGCTAAAAAAGCGATTCACGAGTCTACTATGAAAGTAGGAGATAGTTAGGTGGACGCGCATAGTAGTCAGATAGGTGTGGATGCAAATATCGCCTTGCTTGTCTTAAAGAAAACGATACTCAAACGAGTGTCGTTTTTATTTTTTGGTTTTTTCTCAAGGATAGGACTTAAATATTTAATAAAGATAATTCAAATCATCATCCCTAAATACATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 88623-86765 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYR01000004.1 Lactobacillus sp. UMNPBX19 NODE_4_length_91221_cov_104.431, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 88622 28 100.0 33 ............................ TTACTGGTTGTGATACAGGTCTTCCATCAACAT 88561 28 100.0 33 ............................ TACGATTATCAGCACTTCTTAAAGGATCTTTTT 88500 28 100.0 33 ............................ CCAATTAAAGTTGAAGAACACGAATAATGTATA 88439 28 100.0 34 ............................ ATACGATCCAGTAGGGTTGTCAGAAATTCTTTTG 88377 28 100.0 33 ............................ TATTGGAGACGATTATATTTATTCCGATACAGA 88316 28 100.0 33 ............................ TCTCTAAACGTTGAGACAAGTTAAAAGCTGGGA 88255 28 100.0 33 ............................ CAAACAAGAAACAAGCGAAACTTTACCAAATAA 88194 28 100.0 33 ............................ TTTGACAAGTACGGTGAAATTGCATTCGATGAG 88133 28 100.0 33 ............................ CATGCCTTTAGCGTGTAAATATTCTGCCTCTTT 88072 28 100.0 33 ............................ TAAAAAAGTCCTTTCCATGCGTACTAGAAAAGA 88011 28 100.0 33 ............................ CATACATTGCGTTGGCTCTATGAATGTCTCCAA 87950 28 100.0 33 ............................ TTATCGTCAGAAAGTCTCTTGATTCTCTTGGTA 87889 28 100.0 33 ............................ TATCTGTCAGCATCCATACAGTGGTCATGCTCT 87828 28 100.0 33 ............................ TGATGCGGTAGTAAGCGAGGTGATGTGGGTTGA 87767 28 100.0 33 ............................ TTACTACATTACCAGCAGGGTCAGTGGTTAAGT 87706 28 100.0 33 ............................ TTTGTGGCAAATAGGTCTTGTAAAGCTTTGAGC 87645 28 100.0 33 ............................ TATTTAAGTTATCAAGAGCAGTGCGTAATACAC 87584 28 100.0 33 ............................ CCCGTTTGGACTGCTTCCAATCGTTGAAATCAA 87523 28 100.0 33 ............................ TTCACGTATCTCTTCATCTTTCTCAGCATTCAA 87462 28 100.0 33 ............................ TAATAATTAGTGTGCTTGTCACAGTACCTTTTA 87401 28 100.0 33 ............................ TGTCGTTGACGTTGGTACTGAAATTTTTGATAC 87340 28 100.0 33 ............................ TTCTTCAAAGCTGCATTAAATGATAATTGTTGT 87279 28 100.0 33 ............................ TAATTATATAAACAATTTTTATTTTTTTATTTG 87218 28 100.0 33 ............................ TAAGTCTACTGGCTTTTGCGTTGGGTGAACATT 87157 28 96.4 33 ..............A............. TAGTGCAGCGTTGTTCTGTTGGATCAGCAAGAA 87096 28 100.0 31 ............................ TAATACGAGAAACATTAATACTAGTAAAGAA 87037 28 96.4 33 ..............A............. CAAGCAAGAAACAAGCCAAACTATATCAGATAA T,T [87031,87034] 86974 28 89.3 34 ..AT..........A............. CCAATCGAGAGAAACTTAGAAGATTAGGAATTTA 86912 28 89.3 33 ..AT..........A............. TAATCGTTTTCTATATTTACCAGATGTCACTCC 86851 28 85.7 32 ..AT..........A......G...... TATTCCTCTAACTTGGCTGATGAAGTAGCCAA 86791 27 71.4 0 ...T.T........A.A.A.T..A.-.. | ========== ====== ====== ====== ============================ ================================== ================== 31 28 97.7 33 GTGATCTCCACGTATGTGGAGATGATCC # Left flank : TCATCAAATTTTTTTCCTTATTTTTGATTATTGTAGGTGGAATTATTTCTATTATTGGAATTCCTATAGCAAAGTTGCTATTTTTACTAGTATCACGTCAGAGAGAATATTTAGCGGATATTGGTTCAGTTGATTTGACACGTGAACCAAGTGGCTTAATTTCTGCATTATCTAAACTTGAAAAGCTAGAAGAAGGAGAGAGTACTCCACAAATTGTCTCGCAAGATTTAACCCTACAACATTTGTATTTTAATTTCCCGAGTGCTCATAGTTGGATTAGCCGCCTTTTCTCCGATCATCCACCTTTGGATAAAAGAATTGAGCGTTTAGAAAATAGTAATCAGATAAAATAAGATAAGTATGACCAAATATCATGAGATGGTATTTAGTCTTTGGTTTGGCTAAGGTGTGGTGCAGCATTCGATTTTTTGTTGATAGAAACTGATTAAAAATGATATTATTCTAACTAGAGAACGGCATCACAGCAAGGATCTTTTAGT # Right flank : TAGGATATTAGCAAAAATAATTTATATTTGAGTGCTTTTTATCAAAATGACGCGATAAGTAGTAGTCATATGGTTTACTGGCCATAAAGATCATGAGAAGAGTTAAAAATTAATCACTCTATAAGTGACCTTTTTGATTTTTAATTAGAGTACTTACTATATTGTGTAAAACAAAATTATCGAAATGGTAAAGGAAGAAAATCAACTGTATTATTGGCCCATTAAACTTATTAAGAGGAAGCTACGATTAGAACTATATAACGTTGATGCTAAAGTAATTAAGCTAGGCCCTTTTGGGAAAAGTAGTGTACGATAATTCTGAATTTAAAAATTGTATAGTGCAAAAATCAAGCCTTTAATCTCTGTTCCGAAAAGAATGTCGAACCTAATTCAGCGAACTTAAAAGTTTTATCTCATTCATTAAGCGCTCTGGTAGCGCTTTTTGTTTTGTAATGGACTTATCGCTACTGATAGATAATCTAAAAAAAGTTAGTTACATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCTCCACGTATGTGGAGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //