Array 1 241727-241087 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNO01000008.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SE368 368_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 241726 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 241665 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241604 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241543 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241482 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 241421 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 241360 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241299 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241238 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241177 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241116 29 96.6 0 A............................ | A [241089] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 259473-257859 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNO01000008.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SE368 368_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 259472 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 259411 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 259350 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 259289 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 259228 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 259167 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 259106 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 259045 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 258984 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 258923 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 258862 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 258801 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 258740 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 258679 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 258618 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 258557 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 258496 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 258435 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 258374 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 258313 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 258252 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 258191 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 258130 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 258069 29 96.6 32 ........A.................... CAGGTTATGCGCAAAAATTAATTCATATTATA 258008 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 257947 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 257886 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //