Array 1 162986-164077 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHHG01000001.1 Streptococcus thermophilus strain St-10 NODE_1_length_214067_cov_1.61822_ID_3347, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 162986 36 100.0 30 .................................... TCGTCCGGAATTTTGTAAACGGCCATTTCT 163052 36 100.0 30 .................................... ATGAAACAGAATGATTTTTACGAAGTCGAA 163118 36 100.0 30 .................................... ATTATTTTGACAATGGGGTTCCTGTTGATA 163184 36 100.0 30 .................................... ATCAAATGTAACCGTTATATTTGCTGTGAT 163250 36 100.0 30 .................................... ACTCGAGATCGACAAACTCAAGGCCCAAGT 163316 36 100.0 30 .................................... TTCGTCTACTTTCGGAAACTTATATATATT 163382 36 100.0 30 .................................... ACGAGGTGAAGATGGTAAACAAGGTCCGCA 163448 36 100.0 30 .................................... CCGCAATTATACATGTACGTAATAGCAGAT 163514 36 100.0 30 .................................... AGAAACTTCCATAAGATTTTGGAAAGAAAA 163580 36 100.0 30 .................................... TTACACTTGGATCTTAATTCGAGGTAATGA 163646 36 100.0 30 .................................... GAAATTACTTGGATATAAAGCAGACGGTAA 163712 36 100.0 30 .................................... GGAAAAATTGACCAGGCTAAAAGTCGTATT 163778 36 100.0 30 .................................... ATCTTTCTCACTTGTACGTTTAGCATAAGA 163844 36 100.0 30 .................................... TGGATACGCTGGAAATATCAGAGGAGAATT 163910 36 100.0 30 .................................... TATGCAAGTAAAGGAATATGCACTCTATAA 163976 36 100.0 30 .................................... ATCAAGGTTGTTGAAGTCGAATGCTATTGT 164042 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTGTTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTTGGTTGACATCTCCTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAGGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 88506-89859 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHHG01000003.1 Streptococcus thermophilus strain St-10 NODE_3_length_107785_cov_1.68254_ID_3357, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 88506 36 100.0 30 .................................... TAATGTATATCTCGCAAGGTGTGATCCATA 88572 36 100.0 30 .................................... CAATAGCTTTGGCAGAGTGTGAGGCTAATG 88638 36 100.0 30 .................................... ACTTACAGAGGATATCAACTCTAGCTTTAG 88704 36 100.0 29 .................................... CTAGCCTTAAAATCACTGCGACCGCAGTA 88769 36 100.0 30 .................................... GTGAAGTAGAGCATATGAAGTCCTCATCTT 88835 36 100.0 30 .................................... ATCATGGCAAGAGCATTGCTTATGGCTGAC 88901 36 100.0 30 .................................... GAAGCACCTCTTGCGTTGATAAAAGTATTG 88967 36 100.0 30 .................................... ATCATCGAGAACAAGCTTGATAAAATCATC 89033 36 100.0 30 .................................... ATGGTTCTAATATCGGTACTTACTTTATCG 89099 36 100.0 30 .................................... CACACATTCAACAGATTAATGAAGAATACA 89165 36 100.0 29 .................................... CATTGGTAAACGTGAACGCTTCACAAATG 89230 36 100.0 30 .................................... AACGAATTTAAAGATTTTGATGAAAGTCTA 89296 36 100.0 30 .................................... ATACTGGTGCTCAATTAGCCTCAAACGGCA 89362 36 100.0 30 .................................... CTGAGTGGCTTGTATTGGATGATGTGGGCA 89428 36 100.0 30 .................................... TCATTTATCAGGAAAATTTCCCTCAACGTG 89494 36 97.2 30 A................................... GCTTAGCTGTCCAATCCACGAACGTGGATG 89560 36 100.0 30 .................................... GAGCGCCCTCTATTACTTAACATAAACGGT 89626 36 100.0 30 .................................... CAGATAGCTGTTAAGTCGCCTGGCTGATAA 89692 36 100.0 30 .................................... CAACCAACGGTAACAGCTACTTTTTACAGT 89758 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 89824 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 71771-73327 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHHG01000005.1 Streptococcus thermophilus strain St-10 NODE_5_length_90220_cov_1.65798_ID_3361, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 71771 36 100.0 41 .................................... TATCGCTGAATGGATAGAACATCCATTCTCCATCGACAACA 71848 36 100.0 38 .................................... AATTGGATAGCGCAGGCTACCAAACTTCTAAGATGATT 71922 36 97.2 37 ...........................A........ TCTTGTTGGCGTTTTTCAATAACTTTCTTATCAATCA 71995 36 100.0 38 .................................... TACGTGCTCGTTTGCCGAATAATGTCAATGTTAATGCG 72069 36 100.0 36 .................................... TTTTCGTTTTTGCGAGCTTCAATGTCTGCTTCAAGC 72141 36 100.0 37 .................................... GGTTGAAACCATGATAGTGTACGGCCTACTGTTCTCA 72214 36 100.0 35 .................................... AAGTCCATCGATAGATTGATACTCTTCTAACTTTT 72285 36 97.2 36 ......G............................. ACTTTGTGCATCACTTCGTTGAACTTAACTTCTTTA 72357 36 97.2 36 ......G............................. TCTTTGAGGAAGTATAGACGTTTCTGTTCTTGCTCC 72429 36 97.2 34 ......G............................. ATTGATATCTTCAGGTTTTTTAGTTAAATGAAAT 72499 36 97.2 36 ......G............................. AGTTACAAAATGTCGTTGGTGCTTGTCGCAGTATTT 72571 36 97.2 36 ......G............................. TGAGAAACATAGAAAACATGGTATGAATTATCATAG 72643 36 97.2 36 ......G............................. GGTCAAAATCAATGATATCTACGTTCTTAGTACCTG 72715 36 97.2 36 ......G............................. CCATATACTCTAGCATTTCCATACACTTTAGCATTT 72787 36 100.0 34 .................................... TGAATGTCGTTAGTTACCACATCGAATCCAGACA 72857 36 100.0 40 .................................... GTGGCAGTAACTTTAACTTTAATAGAAGCACTCATGATTA 72933 36 100.0 35 .................................... TCTTTCTTGATAATATTCAAAGATATTGAAATTAG 73004 36 100.0 37 .................................... ATATTTGCAACTCGATTTTCAGCTACTCCGGCAATAG 73077 36 100.0 35 .................................... AACTCTTCCACTTTGTTTTCTTCTACAATGTTTTC 73148 36 100.0 38 .................................... CGTTTGTTTAATTGCAATAATGCTCGCAAACTATCAAG 73222 36 97.2 34 .................T.................. GCTCCTACCCATTGTGGCTCATTCATTTGCTTTA 73292 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ========================================= ================== 22 36 98.1 36 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATTCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGTCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACAATATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGTCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAATTTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //