Array 1 72222-73030 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019778.1 Methylomonas koyamae strain Fw12E-Y plasmid pFW12EY, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 72222 28 100.0 32 ............................ TTCTACCAACTGGGTTAACTGCTCTTCCTCGG 72282 28 100.0 32 ............................ GTCGACCGATGCGGTGCGCGTGATCGTCACCT 72342 28 100.0 32 ............................ CATGAATCGCATCGCGCAGCGTGGCGATTTTG 72402 28 100.0 32 ............................ ATCGGAACCGCGTCAGGTGCCGTCGATCCGGC 72462 28 100.0 32 ............................ TGATTGTGACCGACTGCCGGGGGTTCGGTTTG 72522 28 100.0 32 ............................ AGCCCGCGGATCATGTCCGCTTCGTTTTCAAA 72582 28 100.0 32 ............................ AAGGTTGGCCGAGCCCGTGACGTTGGCGTCTC 72642 28 100.0 32 ............................ GTCAGCTTGTCGAGCTGATTCTGCAAGTCTTT 72702 28 100.0 32 ............................ TCTGCCATTGCATCGATGCGCCGGCAAAGCCC 72762 28 100.0 32 ............................ GTATGGGCGCAGTGGAATCGACGTTCAACCCA 72822 28 96.4 32 ............A............... AGTTACCGCCAATTTTGTGCCGGCGCGTTTTT 72882 28 96.4 32 ............A............... AGCAATGCGTCGAAGGTGGTGATGCCGTCGAT 72942 28 82.1 32 ....G......TAT......T....... AACTGATTTCTCTCCTCTGGCCAAATAATTGA 73002 28 71.4 0 ..T.G.....TTA....T.....TT... | T [73023] ========== ====== ====== ====== ============================ ================================ ================== 14 28 96.2 32 GTCCACCGCCGCGCAGGCGGCTTAGAAA # Left flank : CATTGCACCGGCATCCGACCGGTGCCGGACAAGCTGCTCGGGTATGCGGTTTACCGGCGGGTGCAGCCCAAAACCAATCCCAAACGTCTGGCCCGGCGCTACGCCAAGCGTCACGGCGTCGATTTGGCGACCGCGTTGAACATGACGGTGGAACTGAGGGCGGCGGGCGAGAACCCGGCTTACCCGCTATCGTTCCGCTATTGCGACATGCTCAAGCCTTCTGTGGCCTTGCCTTTCATTCGCTTGCAAAGCTTGAGCGGCGGTCAAACCTTTTGTTTGTGGATCAGCAAAACCGCAACCGCCGATCCGGTGGTAGGCAGTTTTAGTGCCTATGGCCTGAGCAGCGTTGCCACCGTACCGGAATTTTGACCCAATTTTTTTTGCTCTTTAACAATGTGAACTAAATCGGCCGGTTACGGCCGGGGCTCTTGCGGATGGTGATAATGGCTTTATCCATTCGCACCCCTTGCCGCAACCGGCTTCCCGTTTATTTAAAATCA # Right flank : AATGGCCCGGTTAGAGATAGTTACACTTGGCAGGGAGCATAGTCGGCGGACAATATTTGCTAACCTCCGCCCAAGGTGTATGCTGATACTGCAAGACGTTAAGTAAAGCTATTTTAATTATCGTAACCTCACTCATTTGATATGCTAAGACTGAGTACGAATAAGTCCGCTGCCCTAAGAACTCACACACGTAAAATCGATGACGGCCGCATTGCTTGCCCGCATTGCCATCGAAGAATTGTGCCGTATGTGTATTTTTCATACGGCGTGGCCATGCATTCAGTCTGCAAGTTGTGTGGTGGGACTGTTCAGGTTTTCAAAGTCCATAAATCGATGACATTACCAGGGCTCCTCTTACGTATATTGCTCTTTCTCACTGGGTTAGTGGCCCTTGACTCATGTATAAATTCTCAGGTAAACGCTAAGCGCTATAGTACCAGCGCTACAACGCCAGCCTCTACACGGTTTTAGGGCTGACAAAAGTTACGGGATATTAGCCC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACCGCCGCGCAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2113977-2117191 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019777.1 Methylomonas koyamae strain Fw12E-Y chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2113977 28 100.0 32 ............................ CAAACCGGCAAGCCTTCTAGCTGATGCACGGC 2114037 28 100.0 32 ............................ TTTATCGTTAAATTCCTGGCATAAATGCCTGG 2114097 28 100.0 32 ............................ AAGAATAAATTCCATCATCTGTAAGCCCTCAT 2114157 28 100.0 32 ............................ TATGCCTGGCTGGGCCAATCCCCGGCGATGCG 2114217 28 100.0 32 ............................ ATGAAGCGTTTCAGGTGCTTCAACGTCTGCTT 2114277 28 100.0 32 ............................ ACGGTGTAGCCGGCGCCGGTGATGGTTATGGT 2114337 28 100.0 32 ............................ ACAAGCCGCGGATCATTTTCGACTGGGCATCG 2114397 28 100.0 33 ............................ CAAGTGATTGTGCACGTCCGATAGCTTGTTCTT 2114458 28 100.0 32 ............................ AAAAGGCGATAAGACTGACGTGGCCGGGGTTG 2114518 28 100.0 32 ............................ GGCATGTTTTGCAACAGCAATTGCGCCGAATA 2114578 28 100.0 32 ............................ GAAACTACAATCCGGGTTGCGTATTTTTTAAC 2114638 28 100.0 33 ............................ AGTCAGTTGGAAGCCATGCTGAATAAGTTGCGA 2114699 28 100.0 32 ............................ TCGCGCCCATTCGGCATGAAGCGCAAATCAAC 2114759 28 100.0 32 ............................ TACAGCGGCCAGGGCGGCTTTGCCGATGGTTC 2114819 28 100.0 32 ............................ AGCGCGCCGCACAGGGCGATAAACATCAGGGC 2114879 28 100.0 32 ............................ TTCATCGCGTTACCCTGCAAGATGCCCTGGAT 2114939 28 100.0 32 ............................ ATACGCTAACAAAGACTTCTCCGGTGTAGTCT 2114999 28 100.0 32 ............................ TGCTCAGTGACGCTGCCGCGCTGTTTGAGTGC 2115059 28 100.0 32 ............................ TGGGCGATGGCGCAGTAATGCCACAGCAAACC 2115119 28 100.0 32 ............................ TATCGCACTTGGAAGGCCAAACCGTTTCGATC 2115179 28 100.0 32 ............................ AACTCACACGCTCGGCAAAATCATCTTGCTGT 2115239 28 100.0 32 ............................ TATAATCTTGCAACCAATAATGTATTGAATTC 2115299 28 100.0 32 ............................ ACCGAAAAAGGTTCGCTGGCTGGTGATGTGCT 2115359 28 100.0 32 ............................ GACGCTGGAAAGACAAAAACGGCGAGAGAAAG 2115419 28 100.0 32 ............................ AACGACCATTTCGCCCAGCGATGGCGACCATC 2115479 28 100.0 32 ............................ AATCGTGCGGAACTACGTCATCCCACGCAAAC 2115539 28 100.0 32 ............................ AGATGTAATCTGGGAGGTTTCAGAGGGCGCGC 2115599 28 100.0 32 ............................ AATCTTTGCTAGCTCGCGCAAAACCATGTCTT 2115659 28 100.0 32 ............................ CACAGAATCAGCCACGCAACCAGGCACGATTT 2115719 28 100.0 32 ............................ GCTAATCACCGGTTCCGCCGGTTCGGTGTGTT 2115779 28 100.0 32 ............................ ACCACGCCGTTGCGGGCCGGCTGGTAGATCGG 2115839 28 100.0 32 ............................ AACGCGCACCGAATATCGGCCAAGTCTTGCCG 2115899 28 100.0 33 ............................ CGGCAAAAAAAACGCCGCAAAGCCGATCACAAA 2115960 28 100.0 32 ............................ AGGACATCCCATTTTAGATGAGCGACGACCGC 2116020 28 100.0 32 ............................ CACTTGCCGACGGCGGCTTGTTTTATGTCGAT 2116080 28 100.0 32 ............................ TCGGACACATTTCACAAGTGCCGTTTGATTCC 2116140 28 100.0 32 ............................ TACTAGAGAATTAAAATTGTCAGAGCCTACAA 2116200 28 100.0 32 ............................ AAGAAAACACCAGGGGCATTCGCTCAGATATT 2116260 28 100.0 32 ............................ CGAAGCGGCTCAGGCAAGAAAAGCGATTTGGG 2116320 28 100.0 32 ............................ TCGCCAACCCCTGATCGCGCTTCATGAATACC 2116380 28 100.0 32 ............................ TTTCGGCTCTTTTTCCCCTTTTTCCTGTCTAA 2116440 28 100.0 32 ............................ AGCCGCTGGCGGCGTGTCTAGCGCTACTACGC 2116500 28 100.0 32 ............................ GACGGCGGCTTGTTTTATATCGATAACCGTCA 2116560 28 100.0 32 ............................ ATGGCGAATCAGCCGCCGCAGCCATCGCCGGA 2116620 28 100.0 32 ............................ TATTGTCAAAATGACTTCATCCCTAAACGCTT 2116680 28 100.0 33 ............................ CTTCCGCCACGGCGAGGACTTTCTCAGGTTTGA 2116741 28 100.0 32 ............................ AGGCACGTTCGCGCCGTGACTGGCTCGCCGCC 2116801 28 100.0 33 ............................ ACGGAAGGCGCCTCACCCCAACCCGCATTTTCA 2116862 28 100.0 32 ............................ AACACGTCATTGGAACAATGCCGGCCATGTTC 2116922 28 100.0 33 ............................ TCGTAAATAATGTCGCTGGCAATAGCTGGCACA 2116983 28 100.0 33 ............................ CACTGTTCGGCAACCCAACCCACTCAAGATGTT 2117044 28 100.0 32 ............................ AACAGCGTCGCCAGGTTGCCCGGTGCCGGGTC 2117104 28 100.0 32 ............................ ACCGAATAGCCATACAGCACCGCGCCGAGCAT 2117164 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 54 28 100.0 32 GTCCGCCGCCGCACAGGCGGCTTAGAAA # Left flank : ATTGCACCGGCATCCGGCCGGTGCCGGACAAACTGTTGGGGTATGCGGTTTACCGGCGGGTGCAGCCGAAGACCAACCCGGAACGCCTGGCCCGGCGCTACGCCAGACGCCACGGCGTGGATCTGGCGACCGCGCTGAACATGACGGTTGAATTGCGCGCGGCGGGCGATAATCCGGCGTACCCGCTGTCGTTTCGCTATTGCGACATGCTCAAGCCTTCCGTGGCCTTGCCGTTCATCCGCTTGCAAAGCTTGAGCGGTGGGCAAACCTTTTGTCTGTGGATCAGTAAAACTGAAACGGTCGCGCCGGTGACCGGCAGTTTCAGCGCCTACGGACTGAGCAGCGTCGCCACCGTACCCGAATTTTGACCCAAAAATTTTTCGCTCTTTAACAATGTGAATTAAATCAGCCGGTTACGGTTAAGGCTTTTGCAGATGGTAAAAATGGGTCAAACCATCCGCAACCCTTGTCGCGACCGGCTTTCCGTTTATTTATAATCA # Right flank : ATGAAATCGAAGGATGCCGGGGTTAAATTGGCAGTGGAGTTTGACTACATCAAGAAAGGCAATCCGGCCGTCAATATGATCGTTTCCGGCTTTAGTCAGGCTACCAGAACCATTGAGGAAAAGATTCGAGGGGGATTTATCAGGCGGTGGAATGAGAGCGGGAGGCCGGCCGTCCCTCCATTCGTCTACTCTTACGAGCCACGCCACGTGGAAGCCGAATTTCCACGCCTCGCTCTCATCTGGCGATTATCATAGGTCGAGTCATGATTGAAGACAACAAAAATAGGAAGCTCTATTTGGTGCCTTATCGGAATGTTCGCCGCCGCCAAAAGCGACGACGGCATGCTGTTACCGGAAGCTATCGCCGAAACCTATTGGCAATTGCATTGCCTGCATTCCCGCGCCTGGAGCCACAAGATCGACCTGCGCAAGTTCAACGAGACTTTCCGAACGGCACCGGCGGCCGGGCTATTCCTGGTCCCACAACACCGGAAACGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2694899-2694428 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019777.1 Methylomonas koyamae strain Fw12E-Y chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2694898 35 80.6 38 ...C...-...T.T.T..T.T............... CGCGGTTGACCACGTGCAGGTCTTTTTCCGGAATCAGC GGA [2694869] 2694822 36 97.2 36 .............T...................... GCGGCAGCGTGTGGAGCTGTCCAGTGTGCGCGGCCA 2694750 36 100.0 37 .................................... AACCAAAGCCCCCGATACCGACGTGACGCTGGTACAG 2694677 36 100.0 36 .................................... AATTAGAATCATCGCCATAATAGCATGTGTATCTTG 2694605 36 100.0 35 .................................... TCAATACCTGGATTACATTAACCGCAATGCTAATG 2694534 36 100.0 35 .................................... TCTTGCGGCGGCGGAGGCAACATGCCGGACGACAT 2694463 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 96.8 36 GCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Left flank : GCCTGGTCGACGCCGGCGAACTGAAAGCGGCCGAAGAACGCTGCCACGCCCTGAAAGGGGTCAGCGGCAACTTGGCGGCCGTGGCGCTATTCGAAGCCGCCGCCGAGGTGGACAGCCTGCTGAAACAAAACCGATGCCCCGACCCCGGCCAATTGCAGCGAATGGACACGTTGTTGGCCGAATTGTTGGCCGAAATCGGCAATCTGCCCGCCGCCGGCCATTCCGCCGCGGCAGAGGCGAGCGTAACGGCCAAACCTCAGGCGGAAATGACCGCATTGCTGGAAAAATTGGCTGACGCCTTGGAACACGACCTGGGTGCGGCGGAGGATTTGATGGAACAAGTACGCGCAAGTCTGGCCGACAGCCATTATCAGGCTATCGTTGCCGAAATCAGCAACAAACTGGACCGCTTCGCAATCGACGAAGCCCAATCCCAACTGACCGAACTGCGCCGGCTGATCGCGCAAAGTTAGCCGATTATTTCATTGCTTTTCGTTATC # Right flank : AGCGCGGGCTGGAGGCCTTGATTGGCGCGGCCTGCGCGGGCCGTTTGCGAGGACTGCGTAAAACGGCCGGTCAACTTTAGCGGAAAAGCCTGCGCCGCGCCAATCCAAATAGCTAAGTTCCTGATTGTTAAAGAGCTGCCGGCTTGCGAGAGCTGCCAGACTTTTGCGCGGCACTGCAGCGCTCGCGTGGTGGCGGCAAGCACCGATTAACGTTCTCAGCCACCAGTTTAAACCGGTCAATTTTCGTTCCATTCTATTGTTGCCCTGCCAAGCTTTTGAAACATACACGGTAAACCGTAATAAAATCAGACCGTGGCGATAGGAGACAGGGCGACTGTACGCCAGACCCAACCAAACCCACGAGCCGGTTTTACAGTTTGAACCGGCCACATTTGAGTGGAGATCGGCCGACATTTTACTGATCTCCTCAACATCAGACGATGACCGGTTGCCGTTCCACCACGTCGAAATCCTTGCCCAAACTGACCACCGAGGGCTTC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.90,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //