Array 1 6650-1759 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFCO01000092.1 Acinetobacter baumannii strain TG22168 Acinetobacter-spp-TG22168_375, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6649 29 100.0 31 ............................. ATTTCATAGTTATACGTGAAGTCCCGTTCTA 6589 29 96.6 31 ............................T TGATTACAAAAACCGTCTATTTGTTGTAACG 6529 29 96.6 31 ............................T TGTCAGTATGACGAACCTTAGACATTTCTTT 6469 29 100.0 31 ............................. ATATCAAGCAAATCAAAACCGAAAACGCAAT 6409 29 96.6 31 ............................G AAGAAGTATGTTGATTACTTCTTATTAGTTT 6349 29 100.0 32 ............................. ATCTTCGCTAAATACCAAACCGCCTTTAACAT 6288 29 100.0 31 ............................. GTACACACGTAAATGGGAACGCCTTTACACC 6228 29 100.0 31 ............................. TGGCGAACCAACGTAGTTCGCCCGGCTGTGC 6168 29 100.0 31 ............................. TTTACGACTTGGCGAACAAGTGCCCGATACC 6108 29 100.0 31 ............................. ATACGCTTAATAATTTCCTCTCGAGATTCCA 6048 29 100.0 31 ............................. TCGAAGTAGAGCTTACAGGCAAAGCCCGTAA 5988 29 100.0 31 ............................. TTTAGATAAAGACCCGCAAACGATTCATGAT 5928 29 96.6 31 ............................T GTAACGGTTGCAGCTCCTTTCAAAGTTGAAT 5868 29 96.6 31 ............................T GGAATATTTTGTTGCTGAGTTGAATAAACTT 5808 29 96.6 31 ............................T AGATCGTGACGACGTTGTGGCAGTTGCTGGC 5748 29 100.0 31 ............................. GTATTAGCACAGCAACCAACAATATGAAATC 5688 29 96.6 31 ............................T CTAACCGTGATACTTTCTCTTTAATTAAAGA 5628 29 96.6 31 ............................G GAACTGGATAGAGGGTAAATCAGCACCAACT 5568 29 100.0 31 ............................. ATATTCTCAAGATCAGATGATTAAGGACCTT 5508 29 100.0 31 ............................. ATTGTTGTAGCTTCGGCGTAGCTTAATGGTG 5448 29 100.0 31 ............................. TCCCAAACAAACAATCCAGCATTTTCACCTT 5388 29 100.0 31 ............................. CGGTAAATAAATACTTGGTTAATGTCTTCAT 5328 29 96.6 31 ............................T GCCTCCCCGATAAACTGCGTTAAACTATTAC 5268 29 100.0 31 ............................. TTAATAATCAGCCTGTCACCGGCAACTGCGA 5208 29 96.6 31 ............................T CGAGCTGATTCTGGTTGGCTTGTACGTGTAC 5148 29 100.0 31 ............................. AGATGCCGTACAGCTTAATTGTTTTTAACAT 5088 29 100.0 31 ............................. TTACCGCCTGCACCAACTACACGTGGAACAA 5028 29 100.0 31 ............................. CAGAAAGCTGAAGTAAATCAAAAGCAGTAAA 4968 29 96.6 31 ............................G ATCAACGATTGGGATATTCGAAAAGTAGAAA 4908 29 100.0 31 ............................. ATCTGATCCATAAACGTTGTGCCCTTGAAGA 4848 29 96.6 31 ............................C ACAGGAATGGTTGCAAATCGGCTATGTTACA 4788 29 96.6 31 ............................T TTACTTAGCAGCCCAAATTTATTCTAACAAC 4728 29 100.0 31 ............................. TAATTACTTTAAGCAACAACCACAAGGCTTT 4668 29 96.6 31 ............................T ATGCAAATTTTAAATAGTTAAATTGCGAAAC 4608 29 96.6 31 ............................T ATTAAATCAGGCTGTCAAAATGGCGCGACTT 4548 29 96.6 31 ............................T TGATCTGAATATACGGTGCATAAGACGAATC 4488 29 100.0 31 ............................. GTCATCTGGTAAAGAAATTACGTATTCGAAC 4428 29 96.6 31 ............................T TGATCTGAATATACGGTGCATAAGACGAATC 4368 29 96.6 31 ............................T TAAGGGGTCAAACTATGAAATTAACCGATGA 4308 29 96.6 31 ............................T CCGACTGATCCGCCTGACCAACCGCCTCCGA 4248 29 100.0 31 ............................. TGTGCGATCATTAGCATTAGGTGCAGATTCT 4188 29 100.0 31 ............................. CCATGTGAACATGCATGCATTGATGCAATAT 4128 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 4068 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 4008 29 100.0 31 ............................. GTCAGGCCCTAGCTTTTGAGTCACACTTTCG 3948 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 3888 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 3828 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 3768 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 3708 29 96.6 31 ............................T GTTGGGCCAATAATCAGAGTGTGGCCTACAT 3648 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 3588 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 3528 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 3468 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 3408 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 3348 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 3288 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 3228 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 3168 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 3108 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 3048 29 100.0 31 ............................. GAAGTACGAATCAATGTGAATGAATAACCAA 2988 29 96.6 31 ............................C AGTAACAGCAAAAACAAAAACAGTAACTAAA 2928 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 2868 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 2808 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 2748 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 2688 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 2628 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 2568 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 2508 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 2448 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 2388 29 96.6 31 ............................T AACAGAAGCGCAAAAAAAAGCGTATATCATT 2328 29 96.6 31 ............................T TCACCTGCAAAGTAAATCGCATAAATCTCGC 2268 29 100.0 31 ............................. ATTTCAGCGTCAATAGTCTCAATATGATCGA 2208 29 100.0 31 ............................. TCCCGGAAGGCTTGGCTAAACTTGTACTTTT 2148 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 2088 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 2028 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 1968 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 1908 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 1847 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 1787 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 82 29 98.3 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACTAAAAACATAAATACTTGAATTTTATAATATTTTGAATTTAATAAAAATTATGTGATACATATAGTGATACAAAGTCGATTTAATTAACTATGAAACCTGAGTTTATACAATTATCCCAACTTTTCACAAAATCTGTTTCATGATAGTAAATACTAGCTTTCAAATTATCTTTTAATGCCTTTTTCATTTCTAATGAACGTCCATCAAGTTGGTCATCCGTATATTCAAGATAGTAATATTTGAGTAAATATGAAAACCCTGAGCCATCTCTAATTGATTGACTATCCCCATATTGATCTGCAAACTTTGCCAAATTAGGGAAATCAAAACTGCTAGAATTGTATGACCACTGACCTTTGACATAAATAGTCAATAAATTCATAAAAGTATCTAAAAATTCTTTTTCAGACATTCGGCTAGGATTCATT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9254-17028 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFCO01000015.1 Acinetobacter baumannii strain TG22168 Acinetobacter-spp-TG22168_298, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 9254 30 93.3 30 ............................TG TGTAATGAGTCGGTACAGACTCATAAGGAT 9314 30 93.3 30 ............................TG CTGCAAATCGTAATGCTAAACATAAGAAGT 9374 30 93.3 30 ............................TG ATTATGTAACATAGCCGATTTGCCATAATT 9434 30 93.3 30 ............................TG CAAGACACGCCTGAGCTACGCAAGATTTAT 9494 30 96.7 30 .............................C GGTCATTAATTTTTTGGTCAAGGTGCCAAA 9554 30 93.3 30 ............................CG ATTCAGAAGTTTTTCAAGCGGTATCTGATG 9614 30 100.0 30 .............................. AAAAGTGGGTGTCATTTGTACATCTTCAAT 9674 30 93.3 30 ............................TT CACGGAAATGCGAACTGAAATAAACACTGA 9734 30 93.3 30 ............................TG CTAACCAAAAATTGCGCCGTGCTACTGGTG 9794 30 100.0 30 .............................. TACGGTTAAGACCGTAAGCGATACAGATGC 9854 30 100.0 29 .............................. TCGAACGTTGGGAAGACACAATGGTCCAA 9913 30 93.3 30 ............................TT GAAATAGCTCATACGTCACGCACCTCACAG 9973 30 100.0 30 .............................. TAACCGTAACGCGGAAATCCGATCGTGTTA 10033 30 96.7 30 .............................G TTGAAGAGCCAAAAGATGAAGTTGTTGAAG 10093 30 96.7 30 .............................T AACACCGTTCAAATCGAATTGCACATTCAA 10153 30 93.3 30 ............................GC AAGAAGCGGTGCAAAAACTTGTCGATTTAG 10213 30 96.7 30 .............................C AAAATGTTGCCGCAACTGCCCATATTGAAG 10273 30 93.3 30 ............................GC ATGCAATTTGTGGTACTTGCGGATTTGCTC 10333 30 96.7 30 .............................G CGTTACCTTGCGTTAAAAAATTCAATTCCA 10393 30 93.3 30 ............................TC TGCATCCCTTAAAACGGTTTCAATCGGCTC 10453 30 93.3 30 ............................TT AATAGGAGGCAGATACTCATCAACCTCTGC 10513 30 100.0 30 .............................. GAGTTTTCTCTTTTGAGTGATACCAAGCCC 10573 30 100.0 30 .............................. CAACATACAATACGTTGCCCAATGTGCCCC 10633 30 93.3 30 ............................TT TATCGGCAAGTGTCTTTTAAAGGGCCTTAA 10693 30 100.0 30 .............................. AAGTTTGGAATGAACTCACCCAAGAAATCG 10753 30 93.3 30 ............................CT AAAACTGGACTGATTGTTTCACGTGCTGCT 10813 30 93.3 30 ............................GC AGTAAAACCCATCGATGATTTACCTAAACC 10873 30 96.7 30 ............................C. TGCGACGAATTTGCCTCCGTTTACGGTGAT 10933 30 96.7 30 .............................G AATGTTTACCTGTGATTTTCGCGGTTAACA 10993 30 96.7 30 .............................G TACGGTGAGCACCACGGTCAAAGTCAAAAG 11053 30 93.3 30 ............................TT GGTGGTGATAAGGGGTGCCGAGCCAAGTCA 11113 30 96.7 30 .............................C TCCCACACCTTTTACTCGACCTTGGTGGTG 11173 30 93.3 30 ............................TC TAGAGCTAGCTCCAATTCCAATGTTTTCGG 11233 30 93.3 30 ............................TC ATACAACAGTGCAAAAGTCTGGTGGTAAGG 11293 30 96.7 30 ............................C. TAGCAACACCCTTAATTAACTTAGGTGGAA 11353 30 93.3 30 ............................TT GGTATAACTAGGATTGCCTTTCTTGGTGTA 11413 30 96.7 30 ............................C. CTGGATGAGCTATAACCCCTACTACGAAGA 11473 30 93.3 30 ............................TT TACAAGGTAAATTCTGTGTTTTTAGAGCAA 11533 30 100.0 30 .............................. TTAAAAATCTATTGTAAAGTCTTTTGTTCC 11593 30 96.7 30 .............................G TTAAAAGCTGAGCAATACCAGTACCGCCTG 11653 30 96.7 30 .............................C GGGCATTTTGTATCACGTATTGCTGTGTTA 11713 30 93.3 30 ............................GT GAAGATTATGCAAGACGTGTCTACGGTCGA 11773 30 93.3 30 ............................CC TTTCTTGTGCGGCCTGTGATTCGCTCTATT 11833 30 93.3 30 ............................TT CAACAGACTGAGCAAAAGCTTCACTAGGAA 11893 30 100.0 30 .............................. CCGCGTTTGTGATTAGCGCATCATTACCAG 11953 30 93.3 30 ............................GT GTTAATGTGAAAGCCCCAACTCATTTAGTA 12013 30 96.7 30 .............................T AAAAAGTACCGCCATCATCATTGCTTACAC 12073 30 96.7 30 .............................C GAACTGTGCTTGCTTCTGTTAAGCGTTCAG 12133 30 93.3 30 ............................TG ACACACTAAGCAAGTTGGGAGCATTGAATT 12193 30 93.3 30 ............................GT CTATACACATCTGTTCATGATTACCACGAA 12253 30 93.3 30 ............................GG GCTAAACTTCCTTTGGTACCATCTTGAAGA 12313 30 100.0 30 .............................. TCGAAATGACAGCGATGGACCGCAATATTT 12373 30 93.3 30 ............................GC AGATAAGTGGTTGCGTAATGATGTGGCTAA 12433 30 93.3 30 ............................GT GATCAATATTCAAAAATTCAAGCTTATCAA 12493 30 100.0 30 .............................. CTAATCGGCAATCCTCTGTCAGCTTGATAA 12553 30 96.7 30 ............................T. AATACAATGGAACAGAGACTGTTAAGAATG 12613 30 96.7 30 .............................T TCATTGGTGGTGAGGATGAGGACCAATGGA 12673 30 96.7 31 ............................C. TTTTTACGCATAACAATATTACCTTTACGCT 12734 30 96.7 31 ............................T. TTTAAACCATTGCGTTAAAAACAATTCATAT 12795 30 93.3 30 ............................TG CTGTTGTGCTTGTTGCGGTTGGGATGCTTC 12855 30 96.7 30 .............................C TAATTCAACAGGTACGGCATACGTTAATCC 12915 30 93.3 30 ............................TG ATGATGTTTGTTGGATTGCAACTGATGAAG 12975 30 96.7 30 ............................T. GTGAAGAAGTATCAAACATTGTTCAAGTAA 13035 30 93.3 31 ............................TG TTAGAGCCACACAGCAAGCTACGCAGAATGT 13096 30 93.3 30 ............................TT CTTCATCTTTAAATTTTCGCATTGCTGTGC 13156 30 93.3 30 ............................TT TTAGATCGTATTCGTCGTGAAAAATTACCA 13216 30 93.3 30 ............................TG TCCCTGCTGCAATCATTTCAAGAATCTTTT 13276 30 93.3 30 ............................TC TGAGATGTACGCTAAACAATTCACGAATGC 13336 30 93.3 30 ............................TG AATTTTACAAACTAAAGCTGGACGGAAAAT 13396 30 96.7 30 .............................T CGATCTTAGCACCAAAATCGTAATATGTAG 13456 30 93.3 30 ............................TT GAGCTCTCTCACAACTAAGCGAATTTAAAT 13516 30 93.3 30 ............................TT CTGGAAAGCCTATTATGGATAGGATTATCG 13576 30 93.3 30 ............................TT GAGCACGTTCACAGCTAAGCGAATTTAAAT 13636 30 93.3 30 ............................TT GTGATTGGCGCGAATCTATTAACAAAGAAC 13696 30 93.3 30 ............................TC TTGAAGTCGAGTATAGTTTTTAATCTTATG 13756 30 96.7 30 ............................C. CCAAAATGGAGGGGAGACTACCCCCGAAAA 13816 30 96.7 30 .............................T AGAGTTTTCGAGAGTTCGATTAAGCACATA 13876 30 96.7 30 .............................T GTGAACGGCCAAGCATAATAATCAGGCCAT 13936 30 93.3 30 ............................TG TAAGTAATGGCGCACATCTTTTTTAGCTGA 13996 30 100.0 30 .............................. AGCCTGAATTGATTGAATCGACGATCTGAT 14056 30 100.0 30 .............................. CCATACCAAGCTGCAAACACAACCGCACAG 14116 30 96.7 30 .............................C ACCAGTTACAACGTAATTACCATCCAAGAA 14176 30 96.7 30 .............................C AAAAAGCTAAGTCTTTGGATGGGTGATGTT 14236 30 93.3 30 ............................CC GAAAATTTGTACCGCCGATGTTACACCAAT 14296 30 96.7 30 .............................T GAAGCTAAGAAATGGGAACACCTGCAAGAT 14356 30 96.7 30 .............................C GTAAAAGGACTTTACGGTTTGGGTCAGCTT 14416 30 93.3 30 ............................TC TGGATGTGGCCAAAGCAATTTATCGCAAAA 14476 30 100.0 30 .............................. CAACACCAATACCTCTGTTAAAATTTTCTT 14536 30 96.7 30 .............................C CAAACTTCTGTTTTAACTCTTCGCGTTGTT 14596 30 93.3 30 ............................TC TGGATGTGGCCAAAGCAATTTATCGCAAAA 14656 30 93.3 30 ............................TG TCACAGATTCATAGTGCTTTATAGCTAAAG 14716 30 93.3 30 ............................TT AAATTGTTTTGCATGAAGGTAGCTCGCATG 14776 30 93.3 30 ............................GT GAATATCTCCAACTGCATACAGCTTGCCTT 14836 30 100.0 30 .............................. AACCATCCACAGGGTAACCATTAGCAATAC 14896 30 93.3 30 ............................CG ATATACGACAGGCTTCAAGGCGACCACTTC 14956 30 93.3 30 ............................TT CTGTTAGCTCTGCTGGATCATCAACGCCAT 15016 30 96.7 30 ............................G. ACTGAAACAGTAACCCTCAAATGTTTAAAT 15076 30 96.7 30 .............................T TTTCAGCGAATGGTGTTGTAATTAGTGTTG 15136 30 93.3 30 ............................TT TTGCAATCATGATCCGGACGATAAAAAAAT 15196 30 93.3 30 ............................GC TTAAAGTTTGGATGAAAGCGCATAAGGGCG 15256 30 96.7 30 .............................T GACGAACCTGTCTTACCTTCAGATCCTTCT 15316 30 96.7 30 .............................T ACACTCATCGCGATTCTATTAAAGTCTGTT 15376 30 93.3 30 ............................TT CTTTCCCGATGCTTCAAGTGTCTGGTGAGT 15436 30 100.0 30 .............................. AATGAGAAATTCATAACCATATACCCCGAG 15496 30 93.3 30 ............................TG AAGAGTTAATCAATATTATTTCTTGCTCTG 15556 30 96.7 30 ............................T. TGAGAAAGAAAAAAATTGCGACAAAGATAA 15616 30 96.7 30 ............................T. CTTGGGAAGAGCGTTGCGGGGCTATTTCTT 15676 30 96.7 30 .............................G CTAACTTACCACCGTTTGCAAATGTTTATA 15736 30 96.7 30 ............................T. AAGATACGTTTTTAGCTTTTAATGTGATTT 15796 30 93.3 30 ............................GC AAAACTTAAAAAAGCAATCCAGACGCATGC 15856 30 96.7 30 .............................T TAGCTAAACCTTCAATCTCGCCTTCAGCTA 15916 30 93.3 31 ............................CC CTGAAGACACTTCTTTGAAACGCAACGTCAC 15977 30 96.7 30 .............................T GTCCATTTTGCGGATACGCAGATGGGTTAG 16037 30 93.3 30 ............................TT CCCCCTTGAGCGCTTCAACCATCGCCTTAA 16097 30 100.0 31 .............................. ACTTAGATGACAAAGTATTAAAGCTCTGTGA 16158 30 93.3 30 ............................GG GTATAAGTGAAGTAAGTATCTTGAGGAATA 16218 30 100.0 30 .............................. TGGATGGATATGGCATAGGCAAAGACGGCA 16278 30 96.7 30 .............................T AGAGAATCGGTACTGGATAACCTTGAGCGG 16338 30 96.7 30 .............................T CCTGAGCGTCGTTGGAAGGCGGACTTCCGG 16398 30 100.0 30 .............................. ACTCTTGCAAGCTAGCAAGATAAGCAGGAT 16458 30 93.3 30 ............................TT GAGAATTATGAAAAAGCAGGCTTCTATGAA 16518 30 100.0 30 .............................. CAGACATACTTCTTTCATTTGCATCGCCAG 16578 30 96.7 30 ............................G. GGCGTAAAGATGCGGTGTTGATCTTGCACG 16638 30 96.7 30 ............................T. CGTAATAAGTACACGGTGCAATCGGTGCGT 16698 30 93.3 30 ........................A....G AGTTTTAAACCCGCGCTACACCTTTCTAAA 16758 30 93.3 31 ............................CC AAAAAAAATAGCCCTACGTTTAAGCATCGAC 16819 30 100.0 30 .............................. CGTGAACAATTGTTTTAGCTTTGAACATTA 16879 30 86.7 30 .............C...T..........GT TACTGGGTTGCGGAATATATTCGCAATTAT 16939 30 83.3 30 A.....AA.........T...........T TTTGATCTTTACTTATTCTCGCTTCAAACA 16999 30 66.7 0 .......A...T.....T..C...AGCGTT | ========== ====== ====== ====== ============================== =============================== ================== 130 30 95.2 30 GTTCATGGCGGCATACGCCATTTAGAAAAA # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : TAAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //