Array 1 520449-518343 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP021876.1 Desulfosarcina ovata subsp. sediminis strain 28bB2T chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 520448 36 100.0 31 .................................... GTCCCATTCGGTTGGGTGAGAAAAAAAGATG 520381 36 100.0 34 .................................... CTCAGATGGGTCGTTCCCTAATACAAGCCTTGGG 520311 36 100.0 32 .................................... CAATAAAGTCTGTTGGTGTGTCCAACGCAGAT 520243 36 100.0 35 .................................... GATGGCAATTGCGGGGACTGTGAATGTCAGTAATG 520172 36 100.0 33 .................................... TTGAAATGAAGGAGAATAATAGAGGATCCGACT 520103 36 100.0 33 .................................... GACAGCCTCATCCCCATCCGACAAAATGAAGTC 520034 36 100.0 32 .................................... TTTAGGTTGTGGTCTTCTGTCCCGAGTTCACA 519966 36 100.0 31 .................................... CCACAGTCTGCAACACCCGCCAAACTCGTGG 519899 36 100.0 32 .................................... CATGGCAACACTCCTTTCAATCTATTCTATAT 519831 36 100.0 31 .................................... CTAAATGGTGCCCCTGTCGGGAATGTGGTTT 519764 36 100.0 34 .................................... GCGAGTAAACCCTCCGGCTTCAAAAAACTGTTTA 519694 36 100.0 34 .................................... TTTTGGTTTTGTGTCCATAAGGACCTCCTTGTTC 519624 36 100.0 33 .................................... GCCCGCTGGCCCGCTGCTGTGAGCCGGGTTTTA 519555 36 100.0 34 .................................... TAATGGGTTGGGGCTGGTCGTTGATTACAGGCTC 519485 36 100.0 32 .................................... CCTTTGTCGTCTTCTGCTGTTGCAGAGAAGGA 519417 36 100.0 33 .................................... ACATCTCCATCTTCTACTGTAGTATCTCCGGTC 519348 36 100.0 33 .................................... AAACCTGCCAAGTCATTACTCAATCTCTATCAG 519279 36 100.0 33 .................................... AAACCTGCCAAGTCATTACTCAATCTCTATCAG 519210 36 100.0 32 .................................... AATCGACTTAGCCGCATCTTTCTTAGTGTTAT 519142 36 100.0 33 .................................... TAGATGGGAATGATTGCTATGATCTCGTAGATG 519073 36 100.0 34 .................................... CTCACGTCGGTCTCTGGCCTAAGAAAATTGCCAC 519003 36 100.0 32 .................................... CGAAGTTGATTTCTACTTCTTCGGGTCCGGTG 518935 36 97.2 34 .....................C.............. AGTAGTCCTAACGGGAGTAGGATTGGGGCGCGGA 518865 36 97.2 34 .....................C.............. CGCCTCCCAATGCTCCTTTTGAGGAATAAGCATC 518795 36 100.0 33 .................................... TTTTGAAACGAGACTAGTAAGTGCCGCCGTGTT 518726 36 100.0 36 .................................... CTTTTCCATCTCCACTATTAAGCATAAGGGCTACCA 518654 36 97.2 32 ..............T..................... TCTGGGCGGATGTCGGATTTGTCGAAGTCGAG 518586 36 97.2 33 .....................C.............. CCGACTTTTCGGCTCGAAGTTACCATTTAAAGT 518517 36 100.0 34 .................................... TTTATCCGGAAGGGGGGTTAACAAAAATTCCTCC 518447 36 91.7 33 .....T....C..........C.............. TTTGCCAGCATGAACATAGCAATAAGAATGATG 518378 36 94.4 0 ..........C..........C.............. | ========== ====== ====== ====== ==================================== ==================================== ================== 31 36 99.2 33 GGTTGGATGGTTTCCCTGAACTGAAGGGATTAAGAC # Left flank : GGTCGATTCTTGGTCTGATCTAAAAATCACTGAAAATATAGGTAAAAATTATAATAAAATAATAAAGAGCAAGGGAAAAGTTTGGTGGGTAATTGCTATGAAGCATTTGTCGGAAACAAAAGCTGATTTGATTAATGGATGGTCAAAGGAACCCAAAGGATCCTTGAAGAAAAAAGCTTTCAATAAATTAAAAAAAAGTCATAATGAATTGTAATCTAAACATGATTAATCGATTTTTTGATTCGTCTCGATGTGCTATATAGATATTCTATCAAGACTTAACACGCTGGACATCACTTTTTTAATCTTTAAAAAATGCCTGATTAACTTGTAACAGATTGAATTCATTTAATTATTTGTTTTTTGTCTTATTTCCTTGTAAACTTTTGATTTAATTATACAAAAGCGCAAGTCACATGCTAACTCAAAAGAGCCGATTTCATGTCCAAAATGGCATAGTCTATCATTACGATATTATTGTTGTATTTGATTTGGCCAGA # Right flank : CTTCAAGCAGGAACTATGTGTCACAAATTCAGGGGTTGAATGGTAAGACAGGTTTATAGTGAAATGGAAAGATGTCATTCAAATAAAAATACCACCTGGTTCGTCACCCGGCATGCCGGAGCGCAGGAGTGGGCCTTTGATGAAGGCTTGAAAGTCGATCAGGTAGTGGATCATCTTGATACGGACGAGGTGAAGAAGGGTGATATTGTTATTGGCTCCCTGCCGGTGAACATGGTCGCATCATTAAATGAGAAAGGAGTCCGTTATTTCCACCTTATATTGCAGATCCCCAGGGAAATGCGGGGAAAACATCTGTCTGCTGATAGAATGCGCTCTTTTGGGGCTAGAATTGAGGAATATGTTGTCGTAAAACGGACAAAAAAAATAGTGGACAATGACATCAATGAAAACTTCGCACGCTAAAGGACCATCAAAAAAGGCATTTAGACAGCAACATATGAAGGCCGTTTTTTTGCATATGTTCGGCTCGCGTAGTATTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGGATGGTTTCCCTGAACTGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.50,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 531707-531355 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP021876.1 Desulfosarcina ovata subsp. sediminis strain 28bB2T chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 531706 37 100.0 48 ..................................... TTTGAGATGTCCTTTTCAAAGTACTGAAGGGTATCCTTGACCGTCTGG 531621 37 100.0 43 ..................................... ATCCCCAGAGCGTCATCGCAACACTGGAACGGTACCCAAAAAG 531541 37 100.0 36 ..................................... TTGAATTGCTTCTTCAGAAGCCGGCGGAGCAGTTTT 531468 37 100.0 40 ..................................... GTACAAAGAGGGGAGATTCTACTCCCGTTCTGGTCATGAA 531391 37 94.6 0 .................................G..T | ========== ====== ====== ====== ===================================== ================================================ ================== 5 37 98.9 42 GTTGCAGCGATAAGCAGAGCCTTCGGGCGATTGAGAC # Left flank : TGATGCACCTGGAAGAGCGTAAGGGCAGACTCGAACTGGTTCTGGAGAAGAGTATTGTGGACGTCAACGCCCCGGCTTTCCGGGTGGTCAAGGCCTTTCGTGAGAAATGGCTGGCCGCCTCCCCTGACGGCGACCACTACCGCCATCCCGGTCCGATCCGTTTCACCGGCACCAGCGAGGAGGATCGCCCCATCACCCTGCTGCTCAACGCCCTGGGCGGGCATATGTGCGCGCCGGGGGAATCAGGACCGGCCTGACCCATTTGGATGCCGTTGAAATGTTAAACGTATTGGATTCATTATTTTTTAGTGGAGTTCGAAAAAACCGGCAAAAATCGAATGGGTTACCAGGGCATGGTTAAATAGCTGATTTGTAAAATATTTCTTCATTTTTGGAGGACTTGCGGATAAGGTTATGGATATCGCCGCAACCACCAAAATGGGAGGTTACCTTTTTGCATTGGATAACCTATTAATTTTATGACTTAAAAAAGTGCCGGT # Right flank : ATCTATCTTCGCAAGTTTTTTTCTCTCGCCCGCTTCGCTCGAGGGCACAGAGCCGAACACAATTTTGAATTTTTAGTTTTGAATTTTGAATTAAAATCGGATTAGAAACCTTCATTCAAAATTTATAATTCATCATTAAAAATTGGTTTTGGGCGAAGCCCATACAATTTGTTGTTCCTCTCTGTGGGCTCTGCGACTCTGCGAGAGATTGCTTTTCCTCTGGTTCCCTCGCTCCGCGTGGGAACCCCGATTGACCAGGTACACAAAACTTGCGCTCCCACGCAGTATGGGAGTGAGGGGGGAATTCACTGAAGCTTCATCGAAAACCGAACAGGATAGGGTCGCAGGCATGGCCAGCTCCTACGAACCAGCCGCTGATTACTACCGGGCACTTAACTCCTATCCTCGAACCGGGAATTCCGACCTTTTTCTCTCGTCCGCTTCGCTCAAGACGCAGAGACGCAAAGGCGGTTAGTTTCCGAATGGGGAATCAAATAACG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCGATAAGCAGAGCCTTCGGGCGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 3 568020-570436 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP021876.1 Desulfosarcina ovata subsp. sediminis strain 28bB2T chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 568020 32 100.0 34 ................................ ATATAGTCAATGGATGCGCCTTCAACGTTTTGCG 568086 32 100.0 33 ................................ CGATGTCCCACTCGAATGGCTATGGCTGCCCGT 568151 32 100.0 34 ................................ ATCAAAAGAGTTCAACCGAAAGCTGAACGCAACC 568217 32 100.0 34 ................................ TTAAAATAGTATCGTTGACATTCGGATAGCACTT 568283 32 100.0 34 ................................ TGGTCGTCATGGTCAACGACAAGGGTTTTCCCGC 568349 32 100.0 34 ................................ TGAGGTACTATAAAATAAGGAGATCTTAGCATGG 568415 32 100.0 33 ................................ ATACCAGTCCATACGGATATTTTCTGCCCAATC 568480 32 100.0 34 ................................ CTCACAGGCGGCATGGGAAGATTACGAAAAAACT 568546 32 100.0 34 ................................ CACTCTTAGTGGGCATCAATATTCATTTTACAGT 568612 32 100.0 35 ................................ TTGGTGATAGTTCAGGGGCTGTTCCGCTTCTATTC 568679 32 100.0 34 ................................ ATTCTTGGCCTGTTGGCGCTGATGGGATTTTTTA 568745 32 100.0 34 ................................ CCTCCAAGTATCTAAAAATGCGCGGTCATCCTCA 568811 32 100.0 33 ................................ GAGTCGGTATGAAGCGCCATACCACTGCGGTGC 568876 32 100.0 34 ................................ AGACCTTATTTCATGGACGAAGCAGGCGGTTGAT 568942 32 100.0 34 ................................ TTTTCTTTCACGACACACCCCTTTTTCAGTTTTG 569008 32 100.0 35 ................................ AGTTGCAATTGATGAACTTGATATGGTCTGTTGTC 569075 32 100.0 35 ................................ ATCAGAAAGTAAAGTGATTTCTTATGATTTATTAG 569142 32 100.0 34 ................................ TTACTCTGAGGGTTGGGCGGAGGAAATAATCGAC 569208 32 100.0 34 ................................ CTTTTTGCCCACGACTTATCTCCTTCACGCTTTG 569274 32 100.0 36 ................................ ATGAACTTTCAGGTGGGGAAAGGAAAACGAAGAAGG 569342 32 100.0 34 ................................ CATCCACAATATTCCACATCTCCGCCAATATACG 569408 32 100.0 35 ................................ TCTTATCCGCATCCAATCGTTGAAGAAATAACTAA 569475 32 100.0 34 ................................ AACTCCCAAACTGAATTGACATCAAGTAATCCGG 569541 32 100.0 34 ................................ GGATCCACATAGGCCAGGGCGTACAATGACCCAG 569607 32 100.0 35 ................................ CGTATAGACATCGATGCCATCATCATCCATGACCG 569674 32 100.0 33 ................................ ATGTTTGCGCTCTGGCAGACGGTCTGCTTTTAA 569739 32 100.0 34 ................................ AATTCGGTCTATAATGGGGATTACGGCATCCATC 569805 32 100.0 34 ................................ TGGTGACGATGAGATATCGATCGCGTTTACGTAA 569871 32 100.0 35 ................................ TTTTCTGATCTGCCGACCGATAACGAAAAAAGAGC 569938 32 100.0 34 ................................ CATTGTACCCGCCAGCGCTTTGACTACCCCAAAA 570004 32 100.0 34 ................................ GGTTGGCTACCTTCTCTTCTATCAACCGTCTCAA 570070 32 100.0 34 ................................ ATATTCACAACGGAAAAAAGCGCCGGATTTTCGA 570136 32 100.0 33 ................................ GGCACCCGTTGGAGTCTTATAGAATCCCATTTT 570201 32 100.0 36 ................................ TAATACTCTTTCTATTAGTGACACACAGGATGTTAG 570269 32 100.0 36 ................................ TTATCAGGCCACCGTTTCGGATGGAACCGAAAAGCA 570337 32 100.0 36 ................................ CTTCAGGTGATGGCAGAACGTGGCATTGCCGATGAG 570405 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 37 32 100.0 34 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAC # Left flank : TTATGATGGTGCTTGTCAGTTATGATGTGTCGACGATTGATGAAGAAGGACCGGGACGTCTGAGGCGGGTGGCCAAAATCTGCAAGAACTACGGTCAGCGTGTGCAGTATTCGGTTTTCGAATGCATTGTCGACCCGGCGCAATGGACGGTTCTCAAACAGAAACTGACTGACCAGATCGAAACAGGCACCGATAGCCTCCGGTTTTACTTTCTCGGGGCCAATTGGAAAAATCGCATCGAGCATGTGGGCCTGGAGAAAAGCTTCGACCAGGAAGGTCCCTTGATCGTGTAAACGCAATTTGAGCTCCAATAACACCCGATGCGAACCCCAAACGGACAAGATTTTACCGGGATGTTCGCGTTGTCGTTTATCTGACTGATTTAAATGCAAATAGAAAAATGAGGGATTTTCTCAGTGAGAACTTTAACGGCCTTGAAACGTCATATCGCGGATGACCGCAAGATTGTACCTATAGAAACAGGACGTTAAAGTGCAGCA # Right flank : CTTGAATGGCGGACGTTTACGCGTTGTGTTGGCCACAACGCCGGGTCTACCAAAGCGTCCGAATCGGATACTGCCGGATGAGAGAGTCGGGTGTCAGGATAGTTAACGAACGTTCAATAGCCTGGCATACCAACATGCGGTCAAATGGATCCTTTTTCAAGATTACCCAGAGAAAAGCGCAGGTATCCAGAAGGAAACTCATTCATTTTCACCATAAAATGCATCGATCAGATCCTCTGGCAAGGGCGCCAAACAGTCGTCTGTTAACTCAAAACCCGGATATTTTTTTAATGCAAGTCCCACAGGTCGTTTTTTGATGGATATCCTTTTTATGGGTTTTATTTCTGCTATGGGAACATTCCGTTTGCAGATGACAACGGTTTCCCCTTGGGCGACCTTTTCAAGATAGCTGGATAAATGCGTTTTGATTTCATTGATATTTGATTGAATCAAGACAATCACCTCACTTTCATAATTGAGCAACGTGACTCGACTAAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3004963-3000202 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP021876.1 Desulfosarcina ovata subsp. sediminis strain 28bB2T chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3004962 37 100.0 37 ..................................... ATTCCGAACACCGTCCCCGGTGGGTGCGCCCGCAACC 3004888 37 100.0 35 ..................................... TTTTTGGTTGTGGTATGGTGGGGATAGCCAAACTG 3004816 37 100.0 35 ..................................... ATGTATGTGTGTAAGTGTTCATGCGGACATCTGAC 3004744 37 100.0 35 ..................................... CTGAGAAGCGCCTTGGTCCTGGGAGTCGCCTTGAG 3004672 37 100.0 37 ..................................... ATGACCATGGCCCGGGCCGCCAGCTGCATTTCTGCCC 3004598 37 100.0 36 ..................................... GGTCACTATCTCCCGGTGCGTTAGCTGTTGCCAGGT 3004525 37 100.0 35 ..................................... GCACCATCGATCTCAACACAGCACTTCCCATGGGG 3004453 37 100.0 35 ..................................... CTAAGAAGCGCCTTGGTCCTGGGAGTTGTCTTGAG 3004381 37 100.0 36 ..................................... CTGATGATGATCATGTTGTCGTCCCGCCAAGCAACA 3004308 37 100.0 37 ..................................... GAGCAACAAACTCTTGGTTTCCACTCATGGCGGAAAA 3004234 37 100.0 35 ..................................... AGCGCTTCGGTTGATTCGGTATCCTCAACCGAAGT 3004162 37 100.0 34 ..................................... GCGCACCGTCGATGGGAAATCACCGGTCCCCACC 3004091 37 100.0 34 ..................................... CATGATTAAAAAAAATAGCGCAACCGGTTGCGCA 3004020 37 100.0 37 ..................................... CCATAGACCTAACGGTATAGACGATCCCGTCAACTGT 3003946 37 100.0 36 ..................................... CCAATAGGTGCATGAATCAAGACGAATGCCGGAATA 3003873 37 100.0 34 ..................................... TATAGGGTCGTGCCGCTGCCGCCATCGGTTCGGG 3003802 37 100.0 35 ..................................... CCAGCGAGTTTTTTACTTATCTGCGCTGGAATCCT 3003730 37 100.0 35 ..................................... TATCCTCCGCTGGCCGTGCCGTCGATCTCTGTTTC 3003658 37 100.0 34 ..................................... CGACCGTTTGATAACATCCGTGTATGTTGGCATA 3003587 37 100.0 35 ..................................... ATACCACATGCCCATATGTAACCGTGCCATCCTCG 3003515 37 100.0 35 ..................................... TAACCGTGCCGACTTTTGACACGTCGCCAGTCAGT 3003443 37 100.0 37 ..................................... CTGGAGGGTATGGCCGACCGGTTCGGCGGGCAGAGCG 3003369 37 100.0 35 ..................................... ACACTGCTCATGGTGGTATCAGCCATCAGGATATC 3003297 37 100.0 36 ..................................... GAATCTATTTGGTTCATCTTCGCTTTGGATTCCATA 3003224 37 100.0 35 ..................................... ATATTTCTTCCTTCCGGTGAAGTGGTTCCATAATC 3003152 37 100.0 37 ..................................... TGGGTTTCCTGGCTGTATGGCCCATCGTCATGTTCGA 3003078 37 100.0 36 ..................................... CAGCCCCATCTTCGTCATAAGACTTGATGAGCCGCT 3003005 37 100.0 35 ..................................... TTGCCCATCCGGTTTTGGTTGCCAAATCTAAGGAT 3002933 37 100.0 36 ..................................... AACACTGGCAGGGCACCTCTATTGCGTGAGCATTGG 3002860 37 100.0 35 ..................................... CCAACGAGTTTTTTACTTATCTGCGCTGGAACCCT 3002788 37 100.0 36 ..................................... CTTCGCAACTAAGTCAAAATAAATTTGACCGGCTGA 3002715 37 100.0 35 ..................................... GCTGTTTGCGATTTGCCGTGCAATTACCTTTTTTC 3002643 37 100.0 36 ..................................... GACAATGTTGGTCTTAGAGCGTGCATAGGCGGGAGG 3002570 37 100.0 37 ..................................... CTGGCCGGCAGCTTCGTCGACGTGCTACGCAACCTGG 3002496 37 100.0 36 ..................................... TCTGCTGAGTCTTTCTATACAGCATTCGAGAATACA 3002423 37 100.0 38 ..................................... ACAATGTTACGGCTATAAAACAAGCCAAGGAAGCCGTT 3002348 37 100.0 38 ..................................... CTTGCACCTCAATCCTGATGCGCTACCAGTAATATCGT 3002273 37 100.0 34 ..................................... CTAAAACAGTCATCTACATCCCCCATACATCTGA 3002202 37 100.0 35 ..................................... CTGATCGTCGGTGCCACTACCTCCTGCCGCACCGT 3002130 37 100.0 35 ..................................... TCGTATATCTCAATTATCTCGATGTCAGAAAAAGC 3002058 37 100.0 35 ..................................... GGCATTTATAGCGTTTTAATCGACGCGGCGAGTAC 3001986 37 100.0 35 ..................................... TGAAAACGCTTTCCTCAACGCTTACTGCCAGGTAC 3001914 37 100.0 37 ..................................... TGGAAAAACGTTGACGGTCGATAACGATGATGAGAAC 3001840 37 100.0 36 ..................................... ACTTGGTAGCGAAGCAAAAAGCGAGCTTGCCGGACA 3001767 37 100.0 36 ..................................... CTGCATTGGTACCAAGAGATGAAGCCGAGGCAGATA 3001694 37 100.0 36 ..................................... TCAAGATACTACAGACATCCATATAATGTCGAAATC 3001621 37 100.0 36 ..................................... ATTTAGTAGCGAAGCAAAAAGCGAGCTTGCCGGACA 3001548 37 100.0 36 ..................................... AAGCTTCTGCTGAGGAACCGGTTGCCTATAGGGGTA 3001475 37 100.0 35 ..................................... TACAAGAGTATTTCAGTTCCATCACCACAATAATT 3001403 37 100.0 36 ..................................... AAGAAGGGAGTTCAAGTTCTTCAAGTTCAAGTTCAA 3001330 37 100.0 36 ..................................... TTTGATAAAATATCAGCAACAGGATTAACAGAAGAA 3001257 37 100.0 36 ..................................... GATGATGGGACGGTGGTTATGAGGACTGCAGAAGCC 3001184 37 100.0 37 ..................................... ATGTTCGCTGTTTCGTCTTTATCACCCATACGACGCG 3001110 37 100.0 36 ..................................... ACCATCTATGATGGCGGGTCGATGTCTATTTATCCT 3001037 37 100.0 35 ..................................... TTGCGTGGAAGGTTGGGTCTCGTAGAGAAATTATT 3000965 37 100.0 36 ..................................... CTCATAATACGTGTCCGGTGCCGCCGTAAATGGATC 3000892 37 100.0 36 ..................................... ATAATACCATCCCAATAATGATACTCAACACCAGTA 3000819 37 100.0 35 ..................................... ATCATAGGAAAAGATCGATCCGTCCGGCGAACACA 3000747 37 100.0 35 ..................................... TTTTCGCGTTTTCCGGGTCCGGCTCCACCACGTCG 3000675 37 100.0 36 ..................................... ACCCCTCCGGATCGTTCTCCCGCATCCACCCGGCGA 3000602 37 100.0 35 ..................................... TTTTCTTGCGGAAGTGCGCTGGGCAAGGGTTCGCG 3000530 37 100.0 37 ..................................... TTGAAAACAGCCCAATTCTCCTTATTCGGGGAATCCT 3000456 37 100.0 37 ..................................... TGGTAGCGTGGGGAAAACACACATCCGGGGCAGACTT 3000382 37 100.0 35 ..................................... ACGGAAATTCAAACTCCTGGACGGCCGGGACCTTT 3000310 37 100.0 35 ..................................... ACAACTATGTTGTCTCGATGCTTTTGCCGGGACAA 3000238 37 89.2 0 ...................A.G.......C.....C. | ========== ====== ====== ====== ===================================== ====================================== ================== 66 37 99.8 36 CTTGAAGAAACCGATCCAACAAAACAAGGATTGAAAC # Left flank : GTAGATGAAATTCTATTTCTGGATGATGGTACCGCCGCACCACTTGATTACAAGTTCGCCGAGTATAAAGAAAAGCTTTTCAAAACCTATCGAATGCAGTTGGTTTTTTATGGTCGATTGATCCAGGATAATTTCAATGTTCCGGTTAACAGGGGCTTTATCGTGTATACCCGCAGTCGTAACAAGTTGGTAGAGGTCTCTCTTGCGGATACCGATTTCAAGGAACTTGACAAAACCATCGAAGGATTGTGGAATGTAATTGGCCGCTGCAGGTATCCCCAACCTACCCGATATAAGCGGCGTTGTCCGGATTGTTGTTACAGAAATATTTGCGAAAGGAATATTTAGAACAAAAATCTCCTGATATCTGAATGTTAACCATACTCTGCCGATGTGTGATCCTATGGCTGAATGGGTAAAAAAAACCAAATTCTGCTTTATAACGGTCGGGAAGAAAGCAGGCAATATACTGAAAAACAAGAGCAAATTCAAAAATCGGG # Right flank : ATGAGTAAGGCTCTTAACCATCGAGAGTACGGAATATGCGCGCTTGTGCTTTTTACAAGTATCTGTAATGGGGATGAGGCTTCGATAGGGTATCAAGGGTAACCAACAAAAACAGCACTACCCGGGAATGTAAATTGAAATTATAGCGTTTAAGGTTGCCGGAAATAAATAATTCCCCCAGATCGCGCCGGATTTGTGGTCGTCTACAAGGCGCCGGCACCGGTGCATATCGGGGAATATGTGTCGGTGCCGGCAACACGGTAGACGGGCGCAAAGACAAGCAGGATGGTGGAATTATTTATTTCCGACAACCTGAGATAATGTTTTTGGCAAGGCCAGAGGGAGAAAGCTGTATAAGCCATACCGCTTTCGACCGATAACGCAGCCCAAAAACATTATCTTGAATACTATATCTTAATCGATCCCCCCCCAACACTGAAATCTTCCATGATTCATGATTTCTGAAAACAGGTCTGAATATTGACAAGATGGCAAATGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAGAAACCGATCCAACAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //