Array 1 62800-64418 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDK01000035.1 Pectobacterium versatile strain S4.16.03.3I contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 62800 29 100.0 32 ............................. CGGTACGCTCCGCAAGGTCGGCATAATCAGAA 62861 29 100.0 32 ............................. GCGGCGATGTACCCCACCACCGTTCGTTCCCA 62922 29 100.0 33 ............................. GGTAACGGCATCTTGCAAAAACTCTGGCGCGAA 62984 29 100.0 32 ............................. TAACGGGCGAAATACATACCCTCTTCTTCACA 63045 29 100.0 32 ............................. CCTATTAACCTTAACTACATTTTCATTACTTT 63106 29 100.0 32 ............................. TATTCATGTTATTTACCAGTCCCCACCCATCA 63167 29 96.6 33 ............................A GATGAGGATGTTTGTGTAATTGATATTTCAAAC 63229 29 100.0 32 ............................. TATTTTTCCTTTACTGGCGGCTGGTCAGTAAT 63290 29 100.0 32 ............................. GGAGTTTCGTGGGATGTATTCTTGTTCACATA 63351 29 100.0 33 ............................. GGGATCATCAAATGGCTCTTCTGTTCTCACCTT 63413 29 100.0 32 ............................. GCATGGTGCATCGCTAATTGACGCTTTAGGCC 63474 29 100.0 32 ............................. AAGGGCTTTTCCTCGGGGGGTGGCGGCGGTGA 63535 29 100.0 32 ............................. CTCCAGTTGCCGGCGTCCCGTCCTCGCGACGG 63596 29 100.0 32 ............................. AACGGCCCGTAATCATCGCAGTCCGTTCAGCT 63657 29 100.0 32 ............................. GTCGTATCAATCAGCTCGTAGCGCTCCTGATC 63718 29 100.0 33 ............................. CTAAACGCGGTGAGCTCGATACGCGTGAAGATG 63780 29 100.0 32 ............................. TCATCATCCATCTTGTATCCCTTATTATAAAA 63841 29 100.0 32 ............................. GATAAATTATTTTTCTATGCAATACATGATCA 63902 29 100.0 32 ............................. CGGTCGATTAATTAACCCTGCGGCATCGACGC 63963 29 100.0 32 ............................. GAGTTATTTGGTGATTGCTCTAAATCGGTTGA 64024 29 100.0 32 ............................. ACTAAATGAGTCTTCCAACATTTCAGGTCTAC 64085 29 100.0 32 ............................. CTATTCTTGCTGAATCAGGTATCGAGGTTGCG 64146 29 100.0 32 ............................. GATATTCAATTGCGCTAGAAACGCAAAAGAAT 64207 29 100.0 32 ............................. GCTAGGATGATAGGCTTATCCATTATGCATCC 64268 29 100.0 32 ............................. CATGACGCAGTAGTTGTTATTAACAGGGGTAC 64329 29 100.0 32 ............................. ACATGGTGAGGTCTAAGCGATTCGATACCGGT 64390 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTCCCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTACTGGAAGTTCGCGCAGGCGTGTATGTCGGCGATACCTCACAGCGAGTGAGGGAAATGATCTGGCAGCAGATTATCGAACTGGCAGAGCAGGGCAACGTGGTCATGGCGTGGGCAACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAATATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTACTTTTAGA # Right flank : GATGTGAAATGTAAATTACACATGTTTCCTTATTGTCAACTCGTTCCGTTTACGGCATAGTGTTTCCAATTTGGAAACAACAGGAAAGGCATCAGGATGCATGTTATTTCGCGCGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGCTGATCTATATAGGGTGATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGCCTGGATAGGATGAAATATCGGGAAAAGTGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTCGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCCGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66615-68046 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDK01000035.1 Pectobacterium versatile strain S4.16.03.3I contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66615 29 100.0 32 ............................. CAAGCCAGTGAGACCGATCGGCGTTATTGAGG 66676 29 100.0 32 ............................. GTCATTGCCTGCGGGGGTATTATGAATAAACC 66737 29 100.0 32 ............................. TGGCAGCCGGTCACAATATCACTGTCACAACG 66798 29 100.0 32 ............................. TGACAGTAAGTCAGATTGAGCAAAAAACTGGC 66859 29 100.0 32 ............................. TCTGATTTGTTCATGGAATTTACCCGTTAATG 66920 29 100.0 32 ............................. GTTATCTCTGTAAAGCCGCTTAACGATTCAGG 66981 29 100.0 32 ............................. CTGCGCGTCTGGCGCTGGCGTCATCCGCAAAC 67042 29 100.0 32 ............................. CACAATGGCAATGAAACGCTATGGCGCTGACG 67103 29 100.0 32 ............................. GTGTAGCGTATCATTTTGACCCCCGCTATCAT 67164 29 100.0 32 ............................. CCATTGCACTTTCTCCGGGCATTAAAAAACCC 67225 29 100.0 32 ............................. CACGGGCATTGCGCGCCGCGTTCTTTCACTAG 67286 29 100.0 32 ............................. ACCTGTCGATTGACCAGATACCGAAATTTCTG 67347 29 100.0 32 ............................. AGGTCATCACACCTCGCCGCCTGCACGACGGA 67408 29 100.0 32 ............................. CACTTCTTGCAGAATTTGCTGGCTGGTGTCCG 67469 29 100.0 32 ............................. TCAAATCGGCGCTGGCCGTCCAGCTCAACGCC 67530 29 100.0 32 ............................. TGCAAATGGTCTATTCGCAAGTTGAACGCGCC 67591 29 100.0 32 ............................. GCATTGATTGATGAATGCCTGGCGGATTGGGT 67652 29 100.0 32 ............................. CTGCGCCGGGCTTACATTTTCGGGCAGATGTC 67713 29 100.0 32 ............................. CCTGGCCATCATTACCGCTAAAGCACGTAGTG 67774 29 100.0 32 ............................. CGATATAGAAATTATAGGCCGCGTTTTTTGGT 67835 29 100.0 32 ............................. CTTATTAAACGATTTGAGGGCTGCGAACTGGC 67896 29 100.0 32 ............................. TATGGAAACCGGGCAAATGCCTGTTATCTGAG 67957 29 100.0 32 ............................. CCGTTGATCTATCAAGAGCGTAAGAAGCCCGA 68018 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 100.0 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : TCCTCTGCTAATTATTTACTGCGTTACTTTACAACGACGGATATGAATTGATTTTTTCCAATTCATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAATATTTTTAACAGGGAAATTTTTACCGAGAAATAGAAAGAAAAGCGCAGTGGTATAGCTCTTGCAGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCAGATGTATGAAATCAAACCGGCAGATCAGGGAAACGTGGTGATAGCGTGGGCGAAAAACACGGAATCTGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCTGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGA # Right flank : CCGTATGGCTCTAAATTCCCAACGTTGGAAGAGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50366-49919 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDK01000012.1 Pectobacterium versatile strain S4.16.03.3I contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 50365 28 92.9 32 ...........TG............... GAGTATGAACAGTATGCCGAGCGCGGGGAAGA 50305 28 96.4 32 ...........T................ GGCAAACGCAGATACGAGCGTTAATTCTGTAT 50245 28 100.0 32 ............................ AGATAATGCGTGCGGTATGGTCGCAGCCGTCA 50185 28 96.4 32 .....................C...... CACACACCTGCATGTGTCAGCACATCAAGTGG 50125 28 100.0 32 ............................ AGTCGGCCGTAAATGAAAGATGCGACCGAAAT 50065 28 100.0 32 ............................ AAACCCATGAAGATTTCGGACTTTCCGACCAA 50005 28 89.3 32 .G.........T...A............ CATGCGCCTTGGTTGAGATCAGCTTTCTGAGG 49945 27 82.1 0 ...........T.C........-...TG | ========== ====== ====== ====== ============================ ================================ ================== 8 28 94.6 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAAGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTACAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCATTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCTCCCGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGCTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGTTGGTTAGCGTAAAACTTTAAC # Right flank : CTTATCAGGATGCGTCGCTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACTGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCAAAATCCTGCCGCACCGTAGGGTCGGCATTTTCGTTAATCGTTAGTGCCGCCGAGGTGTGCTTGATGAACACCAGCATCAGCCCGACGTTTATCTGACGCAGTGCGGTGACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATTGCCTTATTCCTGCTATCAGGCTTCACGCGCCAGAATAGGTCGCAGGAAGCGCGCAG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 59323-61032 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDK01000012.1 Pectobacterium versatile strain S4.16.03.3I contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 59323 28 100.0 32 ............................ GCGCAACATTGCGCTGAATTACATCGTGAGAG 59383 28 100.0 32 ............................ TGCTAACGTTTTCACGCCTGAACTGAACAGCT 59443 28 100.0 32 ............................ TCGACCAGCTGGGCCGCTCCCAAACCGGTAAC 59503 28 100.0 32 ............................ GACTTCGGGCCTGTTGGTGAAGACGTTGTACA 59563 28 96.4 32 A........................... ATACACACGCGCCGCTACCGCCGCCAATGCTG 59623 28 100.0 32 ............................ TGAAACAGATTTGCCATCATGGTCAGGAATTG 59683 28 100.0 32 ............................ TAATGCCTACATCGTGGGCATTGTGAAATTAA 59743 28 100.0 32 ............................ TGCCAAGAATCACAGAGCGAACGGTAACAGAG 59803 28 100.0 32 ............................ TGTCGGTGGCGTGGTATTCTCTGGTGTTGGCG 59863 28 100.0 32 ............................ CAACCGACAGGTAATGACCGCAATCCCACTGT 59923 28 100.0 32 ............................ GGCGCGGGTAGCCCTGAAATCCAAGTCTGAAA 59983 28 100.0 33 ............................ GCAAAGGGAATAGCGCCATCGGCATGGGTCACA 60044 28 100.0 32 ............................ GTTTCTAAAACGGATTGATGAAGTACTGATCC 60104 28 100.0 32 ............................ AAAACCTGTCGCAGCGAAATCATCGCTCAGAC 60164 28 100.0 33 ............................ CTCGCGCTTCATGCGCGGGTCGTAATTAGCGAA 60225 28 100.0 32 ............................ GATCCTCCGTGGTCATACCGTGACAAAGCGAA 60285 28 100.0 32 ............................ TGTATCAAATCCTTTAGCGATGGCGCGCATGG 60345 28 100.0 32 ............................ GCCGTTACCAACGTAAACCCCGCATCGCTCGG 60405 28 100.0 32 ............................ AGAGGCAATAGTTAGCGCTCAGGAGTCCACCA 60465 28 100.0 32 ............................ TCGCAGGGTGACCGCTGAATACAGAAAGTCGC 60525 28 100.0 32 ............................ GTGCGTAGCCTCCGGCCATGTAACTTGCTGGC 60585 28 100.0 32 ............................ ATTAACGAAATCGGGCAAGTGATTGCACATGT 60645 28 100.0 32 ............................ GCGTAAGGCTGGCTGGTTTGCCGAAAGCAGGA 60705 28 100.0 32 ............................ CAGAACCAGTCACCTTTCTGAACCAGTCAATG 60765 28 100.0 32 ............................ GAGATATACAGATCGGTAAAGACGTGCATTCG 60825 28 100.0 32 ............................ GACTTTTTTGTGTATCCACGAAACCGGGATAG 60885 28 96.4 32 ...........G................ AATCCGGTTGATACTCCAACTGTTGATGTTAT 60945 28 96.4 32 ...........G................ GTTAATTAGAACTCGCAATGCCAGCGATTCAG 61005 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGGGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAATAAATCGCAGGCTAACTATTTGATGAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGATGGCTGCAGAAAATATTACCCAGACGCAGACCCTTTTTCTTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCTACT # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGGCCTTATTCCGTAACGTTTTTAAGTAATGCGTTACTTTTCTTGGAATGAAAAATTGCGGGTTGGGCATTATTACGATTTAAAAATCATCATTTTTCCGTTAAAGTGTTCTCACAGGGGAATAACACGTTGACTTAAGTCAAATTCAATGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCATAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCAACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGACTCTTGGAAAACAGCGATATTTGGCTGTACCGATCCTACTTCATCGTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 68387-67457 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDK01000012.1 Pectobacterium versatile strain S4.16.03.3I contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 68386 28 100.0 32 ............................ CATAACACCATGCTCTATCAGGGTGTGAGCAA 68326 28 100.0 32 ............................ TTGGGCAATAAATCTTTTATGGGTGGCATTTT 68266 28 100.0 32 ............................ GCAGCGCGCTACCTGTTTGTCTTTGGCGTATT 68206 28 100.0 33 ............................ GTCAACGGGGTGCCAGCGCGAAAGCGAGTATCA 68145 28 100.0 32 ............................ TGACCGATGATCTGGCCCGGCAAGTCGGAGTT 68085 28 100.0 32 ............................ AGTTGAGATACATCTCAGCGGAATCAGGTTTA 68025 28 100.0 32 ............................ CGCTATCGTCCAAAGATTTTGGTGAATGAAGA 67965 28 100.0 32 ............................ ACGATTAAACAGATACTGAGCGGCTGGCGTTC 67905 28 100.0 32 ............................ ATAATGGCAACACATATCAAGTTGATGCCCGA 67845 28 100.0 32 ............................ GTCATGGATGGATAAAGACGAACCGGCCAAAT 67785 28 100.0 32 ............................ GGGGCCAGCCTCTGCGGAGTTGACGATAAAGT 67725 28 100.0 32 ............................ GCCAGCAGTTAACCCTAAAATATGAGCAACAT 67665 28 100.0 32 ............................ TGCTGATATTGTCAGGCTGCGTCAGCGACCGG 67605 28 100.0 32 ............................ GCAGGCTACGCAGTTGTCCGTTGTAGCGACGA 67545 28 100.0 33 ............................ ATGATGTTGAACGCATAGCCCGGCCGGATCTCA 67484 28 89.3 0 .............C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGTCTGGGAGAGAATGATGAGCGGATTATTGTGGAGTGATGGATTTACTGCCGTGTAGGCAGCTTAACAAGTATCAGGACTTTCACTTCACCAGACATAATCCGCGATTATTTAACCCAATCTTCCAACGTCAGCCCCGGTACTCGCTCAAATTCTCTCAGATTATTGGTGACCAATATGGCCTTAGCACTGATGGCATGACCCGCGATGGCCGTATCATTCGGGCCAATAGGCGTGCCTGCTGCGGCTAGCGCGATTTTAATTTTCGTCGTAGCGTCTACTGCGGCGCTATCCCAAGGTAACACCGCATCGAGCGATACCTGACATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATAGTCGTAGCTCATTGATTTTTAATTTTGATTATCAGCCCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAACG # Right flank : ATTAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAACTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGCCTTGGGTTAATTGAAGTGCGGTTGATCAACCATACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGATGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAAAACAAAAGCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //