Array 1 104670-101712 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCOU01000012.1 Collinsella ihumii strain GD8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 104669 29 100.0 32 ............................. TCGCGATGGCACGTGTAGCCGTAGCGCGCGAA 104608 29 100.0 32 ............................. CTCCAGAGCGCGCTGGACGGCAAGGCCGCGAG 104547 29 100.0 32 ............................. CTACTCAAAGTTCGGAGTCGTTGAGTATGGCA 104486 29 100.0 32 ............................. GCTCTGCTGGCTTATGCCCAAAGCGTCGGCTA 104425 29 100.0 32 ............................. AGGAAGGAGATTAACGCCGGTCACCAAGCGTC 104364 29 100.0 32 ............................. GAACTGTTCAATCACGCCATAATCAACGGTCA 104303 29 100.0 32 ............................. CATTTCGTCATGCAAATCGGCCATGTCCTCTA 104242 29 100.0 32 ............................. TTGCTAGCGCCAATGGCTTTACAATTGGTAAG 104181 29 100.0 32 ............................. TTCTATCTCGGTAGGCCAGCATCAAATTACCG 104120 29 100.0 32 ............................. TCGCGCACGACCTCCACCGCCTCGCTCGAGTC 104059 29 100.0 32 ............................. CGTCCCGAGTTCGCCGTGTACTACCACAGCGT 103998 29 100.0 32 ............................. AAGGAGTCCCCGACCGAGTCGTCGACCGCCAG 103937 29 100.0 32 ............................. GTCCGGCACCACGCCGCCCTCAAGCGGTTGGC 103876 29 100.0 32 ............................. GGCCAGTCCGTCGTGGTCTACGCGACGGACCA 103815 29 100.0 32 ............................. CAGATCGGGATGGTGTGCGTCCTCGACGTGTC 103754 29 100.0 32 ............................. ACAGCAACAGCGGGACAAGCCACAAGGCCAGC 103693 29 100.0 32 ............................. ACAGCAACAGCGGGACAAGTCACAAGGCCAGC 103632 29 96.6 32 ............................T GCAGGACACTTCGAGGGATTGCGCCTGATTCG 103571 29 100.0 32 ............................. TATCAGCGTCGAGTACATAGATTTGGACGGCT 103510 29 96.6 32 ..........................T.. ATTGGCATCGAGGAGGAATATTCGCAAGCGCA 103449 29 100.0 32 ............................. TTGAAACGGATTGCAATGGCTGCTTTGACAGT 103388 29 100.0 32 ............................. AGTCGCAAGTGAACGTCTCGGGCGCGTCTCGG 103327 29 100.0 32 ............................. TTGGCTTCGATGTCCTTCCGTTCTCGCGCGCA 103266 29 96.6 32 ..........................T.. ATGGCGACGGACACGCTCAAGCTCGACCTCGA 103205 29 100.0 32 ............................. CGGCTCGCCGCCCTGCGCCGGGTCTGCGAGGT 103144 29 100.0 32 ............................. TCACGGTACCACGGATCCGTCTCGCCGCTCAC 103083 29 100.0 32 ............................. ATCTATATGTCCGTGTTCGAGTGGAAGAACCT 103022 29 100.0 32 ............................. ATTGACATCGAGGAGGAATATTCGTAAGCGCA 102961 29 100.0 32 ............................. AACCGGTTCGGAAAGTATCTCGTCGACGGCGA 102900 29 100.0 32 ............................. GTGGCTGAGGAGAGAGCCAGACGCGACGACGT 102839 29 100.0 32 ............................. CGCATTGACGAATCCCACCGGCCCTTCGTCAC 102778 29 100.0 32 ............................. ACGTCCACGAATACGGGTCGACCTACGCCACG 102717 29 100.0 32 ............................. CACGGATATTCCGTCAATATCTGCATGAACTG 102656 29 100.0 32 ............................. TATTCGACAAACCGCATGGACGGGCGCGAGCC 102595 29 100.0 32 ............................. ACCACGTACACGCTCGCGAGCTTCGGCGTCAC 102534 29 96.6 32 ..........................T.. TCATCGGCGGCGTGCTCAGCGCCGCAACAATC 102473 29 96.6 32 ............................T ATGGCCTCACGCCAAAGCAAAAGCGCAAAGCA 102412 29 100.0 32 ............................. GGCCAGAACGGTCAGGATGGTGCTGCCGGCGC 102351 29 96.6 32 ..........T.................. GATAGCGGCGTTGCAAGCGATGGGCGAAAGGC 102290 29 96.6 32 ............................T GGGTGCAACGCCCTCGAGGCGATCCTTGTGGA 102229 29 100.0 32 ............................. ACTAGCAACGATCGCGACCAGTTACGCTATAT 102168 29 100.0 32 ............................. TCGAACCGGTAGTCATGGTAATTCTGGCCGTT 102107 29 100.0 32 ............................. GAGCCCGATCATCCGACCTCCAGCTCCCAGTG 102046 29 100.0 32 ............................. CGCTTGATTCTGCTTTCCCTCAATCACGATGC 101985 29 100.0 32 ............................. CAGATTGAAGACAACGCTTCGCGCTGTCTCTG 101924 29 93.1 33 A...........................G CAGGCGGGGGATCAGGGTCGGCGAGAAGTCGCT 101862 29 100.0 32 ............................. CGCAGGGGACCGCTGGTCGACGCCCATTGGAA 101801 29 100.0 32 ............................. TTCTGGTTTTGCCACGATAGGCAAACAAGGAG 101740 29 86.2 0 .........A.............TG...T | ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.1 32 GTGTTCCCCGCGCATGCGGGGATGATCCC # Left flank : GACAGTATGGACCGGATGACGGGGAGTAGGAGCTTATGGTAGTTCTGGTATTGACCGCCTGTCCTCCTGGCTTGCGCGGGGATGTGTCTCGATGGCTGCTCGAGATCGCGCCCGGCGTGTTTGTGGGAAGAGTATCCGCGCGTGTGCGCGAGAGGTTGTGGGAACGCGTCGTGTCATTAGTGAGGGGTGGACGTGCAATCATGGTGTTCACGGCGCGTAACGAACAGCATTTTGATTTCAAAGTGCATCAACCCGATTGGCTGCCGGTTGATTGCGATGGCGTAAGGCTTATGTGTCGGCCGGCGGGGACTGACAATGCAACACTTGTCGGGGCACCTGCAAAAGGCTGGAGCGATGCAAGCAAGCATAGGAAGGCTAAGCGGTTTGGCAGCAGGTAGGGTGCTCCGAAGGAGTGTTTCTGGCTTAGAAGCCCTTCTTGAATTCGATTGAAAGTAAAGGTAAATTTGACACGGTCGAGGTGTCGGTGCTGGATTTCAAGC # Right flank : TCAGGGCGGCGCAACCGTCCGTATTTCGAGTTCCCCTCAGCGATTACCGACAATCTCTGCACATTCCGACTGTTTAGCAGGCATGTTATCCAGTGCGTTTGTTTACATCGCATTCGCGTGCAAGTATCGCTGGTTTTACTCGCTGCTTGTGATGCGCCGCGAGATAGAAGGGCGGCGGCGCAGGCCATAATCCAGATCAGATTTCACCTTAGGACGAATGACATACGTCGATGCTTTCGTTGAAGCGAACACGACAACGCCGTTCTCCTTAGCGAGAGCAGATTAGCCTGCAAGCCGGATGATGCCGTTTCTCAAATGCTTTGCTCTCGCGATGGAGAACGGGACTGGGATTTCTGCACGTTATGTTCTTAATTAAAGGTCGAAAAGATGCTCAATCTATCATCAAAACGCTTGCCGCCACCATGTCTCATGTCCTTATGGGTATTTGCCATTTCGCGCCCCTGCACGCCGAGAGCCCAACCCTACCTCACCTCAAGCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //