Array 1 151992-148903 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOE010000010.1 Vibrio cholerae strain C11S.2 Scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 151991 28 100.0 32 ............................ TGACCATTAAAAGCGCCTGAATCCCTAAGCAA 151931 28 100.0 32 ............................ TGATAGGAAATCTGAGCTAGAGGCCAATTACG 151871 28 100.0 32 ............................ AATGCGAACCTTTTTTGTATAAGTCTTTTTAC 151811 28 100.0 32 ............................ AGTGCCGTTGATTTGGACAAAAACGGTGTCAT 151751 28 100.0 32 ............................ TTCGCCACGAATCAAGCTGCCAGAAGCATCAA 151691 28 100.0 32 ............................ ATCCTACGGTGTTTTTGCTAATGACACCATTA 151631 28 100.0 32 ............................ CAATGGTTCCTCATAAACGCATTACAGAAAAC 151571 28 100.0 32 ............................ TTCAGGAAGATCGTGCCAGTCAGGGTCAAAAC 151511 28 100.0 32 ............................ TTTAATGAGCTGTTCACGAAAAGCAGCAAGCC 151451 28 100.0 32 ............................ TACCGCCCGACCTCAAGGCCTTCACTCTCTGT 151391 28 100.0 32 ............................ ACCTTGCCATTAAAGCGATCAGCTCCGCACTG 151331 28 100.0 32 ............................ GCCCATGTCATTGCTTGAAAACTCATGATCCT 151271 28 100.0 32 ............................ ACTCACTAAAACAATGGTGGCGATACTGAAGC 151211 28 100.0 32 ............................ GCATAGTAAAGCAGGTTGTTTTTGCCTGATGC 151151 28 100.0 32 ............................ ATCCGCAATTTGCGCATTTGGTCGGCTGTATC 151091 28 100.0 32 ............................ CGAAGGGTGACGATTACGCAAACCACATCAAG 151031 28 100.0 32 ............................ GCCCAAAAGTAAGCGTCACGGCCTTTGTGGAA 150971 28 100.0 32 ............................ ACTATGATATTTTCAACGTCAAGAGTGGCGGT 150911 28 100.0 32 ............................ CTGCTGAAATGTCGAATTACTCAGCTCTGATG 150851 28 100.0 32 ............................ ATACAGTGAGCGCTCGACAAGCTCCCACGCCT 150791 28 100.0 32 ............................ GAGCAGGAGAAAATAACCACGGCTATTTGCAC 150731 28 100.0 32 ............................ TCGATACTTGAGAAGAACGTTCCCGTGTCCAC 150671 28 100.0 32 ............................ AAGCACCAGTTTAATGAAGTTGTCTCTTGTCG 150611 28 100.0 32 ............................ ATCATTAGTCGTTTTTTAGTGACAACCCTATG 150551 28 100.0 32 ............................ TAAAAAGCAATTACCAAATTCAGATGATCCGG 150491 28 100.0 32 ............................ GGATCGACTCATAGCCCTCCGCTTGATATGGT 150431 28 100.0 32 ............................ ATGAGTTCGTAACCGAGAAAGATGTGGCCGCG 150371 28 100.0 32 ............................ TGCTGAAAATGCATCACGGCGCGGCTCCTTCC 150311 28 100.0 32 ............................ CTGACTATGCGTTTTGAACCCCTGATCTATCG 150251 28 100.0 32 ............................ CTGACTATGCGTTTTGAACCCCTGATCTATCG 150191 28 100.0 32 ............................ ATACTGCCTTTTTTAATGTGTGAAACGACTTT 150131 28 100.0 32 ............................ GATCTCGATGTGAATCAATCAACCAGCTTTAC 150071 28 100.0 32 ............................ TAATGATCCTACTAGCCCACTACCCCCAATTG 150011 28 96.4 32 ...........T................ TTTACTGCAAAAGAAATAGGGCAGTTTTTATT 149951 28 96.4 32 ...........T................ TTTAAATGGCAGCGTCTGCACAATATCCACCG 149891 28 96.4 32 ...........T................ GAGAGCGCAGCGAGAGCAATCGACAATGCGAT 149831 28 96.4 32 ...........T................ ATAAAACGTGTCACCAAACTCATTCATCTGCT 149771 28 96.4 32 ...........T................ TACCACGGTTCAACGTCTTGCGGCTGCATGGT 149711 28 96.4 32 ...........T................ TAAAAATTCCACCGATAATGCCGCCCATGATC 149651 28 96.4 32 ...........T................ TCTCTCGCCCCCATTTTTGCCGCATCCGCATA 149591 28 96.4 33 ...........T................ ATGCGGGATTGTCAGCAATCGTATGCTCTGGAT 149530 28 96.4 32 ...........T................ CTGCGGCATCTGCTGAGGTTTTGAGTAGAGTC 149470 28 96.4 32 ...........T................ TTCATGGAATGGATTGATACATCAACAACTCC 149410 28 96.4 32 ...........T................ TCATTGTGATACTGCTTACGTAGCTCCTCCTC 149350 28 96.4 32 ...........T................ ACGAGCAGGACAGTATTTACACCACTTACCTG 149290 28 96.4 32 ...........T................ TGAGCAAGTGACGTCGGTTAAGCCTGTTATTT 149230 28 96.4 32 ...........T................ TATAAGATGAATCCGATAAACAAGCCGCAAGC 149170 28 96.4 32 ...........T................ CCAGAGTTGTCGATACGCGACCGCTTCTTCAT 149110 28 96.4 32 ...........T................ AGCCTTACCTTGCACAACTAAGGTATCAATTG 149050 28 96.4 32 ...........T................ GCGCTCACTCAAACCCCAATCCTGACGGCCAG 148990 28 100.0 32 ............................ TACAACGAAGCAATTTTCGGTTAATAAGGGAA 148930 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 52 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTACGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCGGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGGCCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1384-2251 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOE010000038.1 Vibrio cholerae strain C11S.2 Scaffold38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1384 28 100.0 32 ............................ GAGCTTGAAAAGTCAGAGCTTGCGCGAACAAT 1444 28 100.0 32 ............................ AAAAAGCTCGTTTAAGGTCGGCACGGTTAAAA 1504 28 100.0 32 ............................ TGCTCCGTTTAAACAATTGTTTCCATTAGAAA 1564 28 100.0 32 ............................ TGAGTATGGCTTGGTCAAAAGAGCAGAAAAGA 1624 28 100.0 32 ............................ AAACATAACAAGCGGCCAGAAATAAAACTGAA 1684 28 100.0 32 ............................ TAAGAACCGCTGTGACATTCTTGGTGAACGTA 1744 28 100.0 32 ............................ TCCATGAGGGTGGCGAACTGGTCAACAGTAAT 1804 28 100.0 32 ............................ GTTAATAATTTGAGTTGAACCGTAAACGTTAT 1864 28 100.0 32 ............................ AGTTATGGATATTGAATCTGCTTTATCAATAC 1924 28 100.0 32 ............................ TCTGCGTCAACTCTCCCACTAGGGATTGCGTT 1984 28 100.0 32 ............................ GTTGCTTGTTGGCCGTGTTTAGCTCGTTGACT 2044 28 100.0 32 ............................ GCTACTTGCAAAGAGAATGGCGCAATTGAGCC 2104 28 100.0 32 ............................ GTTCCCGTCAATGATTGCTAGCTTTGGTGGAA 2164 28 100.0 32 ............................ TCGATCGCATGAGCAATAAGCATGTGATAAGC 2224 28 92.9 0 ........................A.G. | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGATGGGGAATATAAATAGTAAACATATTATGACGGTTTCTGAATGGTGTAAGGAGCATTATCCTAGTTTAACTGGTGAAATAGAGTTTGCTATTGTTAGTTGGTGTGAGCATATATCAATCACGAGTGGTGTAAGAACAATTAAATGCCCATCAGGTGAAAGGCTAAATACACGTTTTTATGCGACAGTAATTGAAGAAGCAAGTGCAAGAGTTCTGCGATAAATTTTTATAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGAAGTGGTTACGGTTGTTGTGTTTTAGTTTGGTGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATATTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAAAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGATAAAGTTTCATA # Right flank : TATTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGTGGCATTTTCGTTATGCGTTGATTTTATTAGTTTTTAGTGTGATGCGGTGAGTTTTTCGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGGCTACCAAGTTGAGTTCATCACTAATGTCGGTAAATTGGTTTAAATTGGAGTACTATTCTGAAATTAAATTTGATGAAGAACTCGATGATAATTCCAATTAAAAATGTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 35575-32964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOE010000013.1 Vibrio cholerae strain C11S.2 Scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35574 28 100.0 32 ............................ CAGTTCAGACTCAATACTGGCAGCGTACATCG 35514 28 100.0 32 ............................ GCCAATTGGGCGTCAATGTAATCGCCTGATGC 35454 28 100.0 32 ............................ CATTGATAGGGCTTTGCGCTGCTGAAATTACA 35394 28 100.0 32 ............................ TCTTCCGGTCATTGGTCCTCTAACTCGTACTG 35334 28 100.0 32 ............................ CAAACGAAATACACGTTGATTCCGATGTTGGG 35274 28 100.0 32 ............................ CGCCTAAGCCAGATTACACACCTGACTATTGG 35214 28 100.0 32 ............................ TTAGCGCACCAGTGTCGATCAGCGGATTTGAC 35154 28 100.0 33 ............................ TTCAAGTTGAGCAATGATGCTGTCAAAGATTTT 35093 28 100.0 32 ............................ ACTCAGGGCGTTGTCTCGGAGAGTTTGACAGC 35033 28 100.0 32 ............................ TTGTTCCCACATGAGACTGAAACACATCATCA 34973 28 100.0 32 ............................ GGTTGCATTCAGTAGACTTGCAATGTCCGAGC 34913 28 100.0 32 ............................ GAGAAGGTATTAACAGCGGTGTTGATATGGTG 34853 28 100.0 32 ............................ CAAAAGTAAACGAGATCACAGGAAGCATCAAT 34793 28 100.0 33 ............................ ATAGAGGCTGTAGGTTTGATAGGGCATTTATTA 34732 28 100.0 32 ............................ GTGTCGGATGACGTTTATATCATGGAATTCAA 34672 28 100.0 32 ............................ CAATGGTTTGACTTGTGGGACAACATTGGCAG 34612 28 100.0 32 ............................ CCAACGCGATACTGAACCGACTCATCACCAAC 34552 28 100.0 33 ............................ TTGAGGTACGGCTATTGCAAGCCCAGTAAAGGA 34491 28 100.0 32 ............................ GTTACAAAATAAACACTCGCCATAACGTTAAC 34431 28 100.0 32 ............................ TGATAGTCGACCATCAACCACGCCTAAGCCAG 34371 28 100.0 32 ............................ GTGATCGGCACTCTTGAAGCAATGGTGGCTTC 34311 28 100.0 32 ............................ AGTTAGCTTACCAGTGCCTGAATCAACGCCGC 34251 28 100.0 32 ............................ GTTGGGAAGTTCTGAGAGAATGAATCTGCAAT 34191 28 100.0 32 ............................ GCAACGTGAGTAACCGAAAGCTGCTGCTCAGG 34131 28 100.0 32 ............................ GTTGCCACGCTGACAAGTCAACGGTCGCGGCT 34071 28 100.0 32 ............................ TCAAACTGAGCGCGAAGAAATCATTCAGAACG 34011 28 100.0 32 ............................ AGCAGCGGCAGAAGATCGACGCATCAGGCAAA 33951 28 100.0 32 ............................ AATAAGCTGCATCAGAACTTAAAGAAACACCA 33891 28 100.0 32 ............................ TCCCGGCGACCCTTTACCCGGCTCTTGGCCTA 33831 28 100.0 32 ............................ GAAATACCAGTAGGCAGCATCAGAACTTAAAG 33771 28 96.4 32 ...........T................ CGACACAAAGAAAGGTCATTACTGATGCGATC 33711 28 100.0 32 ............................ AAGCCAAACCGAGCAAGAAGTACGAACAAATG 33651 28 100.0 32 ............................ TGTAATTGGCAACTCTGGGACTCAATCATAAT 33591 28 100.0 32 ............................ TTACACTTGTGTGCGTACTTGTCGTTATAACT 33531 28 100.0 32 ............................ ATAACGGGGCTTTATTTTTACAGCATGCTTTT 33471 28 100.0 32 ............................ AAGTCAACGCCGCCCTCTAGCATTACCTCGGC 33411 28 100.0 32 ............................ TAATGGTTTTGATGGTTGGCAATTCATTGAAA 33351 28 100.0 32 ............................ TTATGATGGACGCAGGCAACAAGCTGCAAACG 33291 28 100.0 32 ............................ GAATGTATCGCGTATATTGTAGCTCTCCACCA 33231 28 100.0 32 ............................ TGTCGAATTTACAGCCATTATGGGCTAGTGAA 33171 28 100.0 32 ............................ CGTCATGCTGTAGCCAGTCGTGTACACGTCCG 33111 28 100.0 32 ............................ TTAAGAGAATTTAACCCAAACGATGTCGTCTT 33051 28 100.0 32 ............................ TGTCGAATTTACAGCCATTATGGGCTAGTGTA 32991 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 44 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCATTGTGCGCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAGAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : TCTGCTTTCCCCATCATATGGGTTATCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTGAATCAAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCTGTGCCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGATCTCCTTATCTAATGCGCTCTAGCATCACACCCGCTTCCATATGGTGGGTAAATGGAACTCTGAATCTTGTGGTGTCTTGTAAAATCTAGATTTTAATTTTAAAGTTTTGTTTTTATTTGAGTTTTAATTGTTCGTTGTCCAAGGGTGTCTTTAGCTGTACAATGAAAACTCGTCTTTTCCCGTACCCCGCGCCGTACCCAGAGCCGTACCCGGAAATGCAGAGGTTTTGAACATGACCAAGCGAATTAGCACCAATGCCACGTTGCAATCATTGAAAGAACAAGACAAAGAATACTCAGTTCCAGATAAGAAAATTGAAGGATTGAATATTCGTGTTCGCCCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //