Array 1 125635-126004 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTW010000010.1 Listeria immobilis strain FSL L7-1554 NODE_10_length_126062_cov_14.874977, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 125635 36 97.2 29 ....G............................... ACAAAGGTCTAATGCGTAGTTTTCTGATT ATA,C [125644,125648] 125704 36 97.2 30 ....................A............... CCTTCTTCAAAACCTAATTCCCAGTTAGTA 125770 36 100.0 30 .................................... TCCCCACTTAAACGCATAAAATTAATTCGA 125836 36 100.0 30 .................................... GGATAGCATTGTTGAGTTTTGTTATTTGCG 125902 36 100.0 31 .................................... TTGTATCGTTATTCGCGTCCCTTGTAACCCA 125969 36 97.2 0 ................G................... | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 98.6 30 GTAAAAGACTACCTCTATATGAAAGAGGACTAAAAC # Left flank : TCACGCAAGCCGATAGAGATAAAACCCTATTTTCAAATTCATTAGAAGAAATCAACCAGTTTATAACTGATTACGTCCCAGCTGAAGTTCGAAAATATTCAGTTTAATGCAAGTTACTCTATGTTATATTACATAAAAAGCATAAAAGGAGATGATTGTCTTGAAAAAAAGCTTCATTCATTTATTTTTCGGAATGATTATTCTAGTAATTATCGCCCTGTATTTTTCATATGCATATCTAAATCAAAACTTTAAATGGATTGCAGGAATACTTTTGTTCTTAGGTACAATATTCAATTGGTTTTTATATCATAGGTATCTATCTAAAAAGTCTAATAAACAAGAGAGTAGCTGAGTGGAGACAAATATTTCTTAAATTCACATAATGGAAAATGGCTCTAAAGCGATATAGAGTATCTGGAAAATAATGCATTCTCACGCAAACCTCAAACTATTCCATTAAACGCTTTACATTTTTTACTTTAATTACTATTATTAAA # Right flank : TCCCCACTTAAACGCATAAAATTAATTCGAGTAAAAGACTACCTCTATATGAAAGAGG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAAGACTACCTCTATATGAAAGAGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 8194-7103 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTW010000014.1 Listeria immobilis strain FSL L7-1554 NODE_14_length_97677_cov_22.153268, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8193 36 100.0 30 .................................... TTTCCTGGAGCGGAAATGTTTCGAAAGTGC 8127 36 100.0 30 .................................... TGATAATAAAGCCTTTAAGTTTACGTACGA 8061 36 100.0 30 .................................... CAATCTTTCTGTTTGAATAATTTTCGCACC 7995 36 100.0 30 .................................... AGACTAAATTCTCCAAATTGTCTTTTGCTT 7929 36 100.0 30 .................................... ACGACCAAAAAAACCTAGACAAGTTAGTCT 7863 36 100.0 30 .................................... CCATTTCTCTCTACTGCCATTTCATATCCT 7797 36 100.0 30 .................................... AAGTTTAGCCATGTATTTAGCTGTGGTTTT 7731 36 100.0 30 .................................... TGATGCAGGTCAGTTATATGTCGATTCTGA 7665 36 100.0 30 .................................... CAGCAATGCAACTAATTCCTTGCGATTATC 7599 36 100.0 30 .................................... GACCAACAAAAAAAGAGCGCTCTACCACTA 7533 36 100.0 30 .................................... TTTGCGAGTTTTGCATCAGCTGAAATATTG 7467 36 100.0 30 .................................... GACGAATGTGCTTATAATTATAGGGCTTGT 7401 36 100.0 30 .................................... TTGTGATTTGCCATCATCAACAAAGTCACA 7335 36 100.0 29 .................................... TCATCTTCACTAATTTGTATTTTTTGCCC 7270 36 100.0 30 .................................... AATATAAATAAGAAATGAGATGTGTGTATG 7204 36 100.0 30 .................................... AATCATCGGGTGGTTTATCGTTTTACCAAT 7138 36 86.1 0 ..............C.........G.A..AA..... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.2 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : AATCAATGATTGATAAACTGACTGCGACAATTAGTGAATTGATAGGTTACGAACTATTAGAACATGAGCTTGATTTGGAAGAAGACGAAATCACGGTCATTGAATTATTTAAAGCCTTAGGAATAAAAATAGAAACGAAAAGCGATACTATTTTTGAGAAGTTAATTGAAATTGTGCAAGTTTATAAATATTTATCAAAGAAGAAACTATTAGTTTTCATTAATGTGTGTGCGTACCTTACAAAGGAAGAGTTGTTGGAATTAAAGCGGTATATTTCTTTATATCAGGTAAAAGTTTTATTTATAGAGCCTAGGAAAATAAAGGGATTTTCACAGATTATTTTAGATGCAGATTATTTTTTGGATATAGAAAATGGCATCTAAAGATTAAATGCTCTTTGAAAATAAAATATATTTAGTTCAACAGGCATTCAAAATTGAAATCTTGCTATGGATTAATGGCGCGATTACGAAATCTTAGAGACTAAAAATTTCTGCGAG # Right flank : AAACCATCTAATTTCGGTTTGTTTTTTTATTTGCCTAGTATTCCTAGATTCTCAGCATAGCGAAATTTGATAGTGCAAGCTGGATTTAAAACGAAGGAAGTAAATCGGCAACCAACACATTCGTTAAAACTCCTGAAATGAGACCTGGCTAAAATAGCAGATGAATATTTTCACAATGTTGTTATTTCTATTTCTAAACAAGCTCATTTAGCTGTTGGCCCTCTTTTTTTAACAAGTTTAGTTAAAATGACAAAAGTAGTTCAATTTTACGGTTAAATTAGCGTATTTTTATGCAATTTTGTGTCATCTTACAGGAGCTGGGTGTGGTATAGTGTTATAGTCAGAGCTCAACCTATGAAGCGTTTTATTACACATACTACAAGAAGCTATTCTGCCTATTTAATAGACATCTACACTTTGCGGACGCTTATTATAAATTTTCTTAGAATAATAATGTAGTATAAATAAAATAAATCTTGATGAATTAGAAGTTTTAAAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 123581-123934 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTW010000008.1 Listeria immobilis strain FSL L7-1554 NODE_8_length_136934_cov_19.597237, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 123581 29 100.0 36 ............................. CCAAATATCCCTCAGAATAATCCCCAACCACGTCAT 123646 29 100.0 37 ............................. GGCGTTGAAAAATCGGAGTCGAATTTTACATATACAA 123712 29 100.0 35 ............................. ATACAAGATGGAAAATACATACAATCAATCAAAGA 123776 29 96.6 36 ................A............ GTAGTAAGCAGTATATGAATATATTGGGTATCCTTT 123841 29 100.0 36 ............................. GCAGGTTACACGATTGATACCACACCCCCGTAAAGC 123906 29 79.3 0 ............C.C.A......A...CC | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 96.0 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCTGATATTCTACTAGAAAAGGGTGCTACAGAAGTAATTGCTTGTGCAACCCATTCAGTTATGGCTGGAGATGCAACAGAACGTTTACAAAACTCAAAAATCAAAGAAGTTATCACATCCGACTCCATCGACCTTCCAGAAGATAAACAATTTGAAAAACTAACCACCATCTCGATCTCTCGCATTCTTGGTCGAGCAATTGAAGGTGTTCAAGAAAACCGCTCATTACATCCATTGTTTTAAAATATCATTTAAAGTAGAGACACAGTGGCGTCTCTACTTTTTTTGCACACGAAAATCTGTCGACCGCTAGTAGTGCAAAAAACACGCTAGGTCGACAGAAATTTGTAATTACCTGCAGGAGAACGATTGAGACATTTTTACAGGCAATAAAGCATAGCAAACACCCTGATTCTTCCCAAAAATAAAGCCGGTCGACAAAAAGGGACTGTTGAGGTAAGATAGGAGTAAGAGGAAAATGGAGCGG # Right flank : CTGTTTAGCTCCATAACGTAGCTGTAGCGCACATTCTTAGTTAGCCTAGCTTCGATAAATAAGCAAAAATTAGAAATAAAAGTTTTAAACTGTTTTTCCCGACTTAATGACATAAAACAATAAAAAGACAAAAAGGGGAATATATTATGAAAAAAACATTATTTTTTTTACTTTTGCTATTATTTTTACTAGCTGGTTGCGCGGCGCAGGACGAAGAATTGTCCAAAGATACAGAAATTTATAAGGGAAATGTTATAAATGCTGATTATAAAGTGCCTCAAAACTTGACGGAACTTGCATCTGCCAGTGAAGATATTGTGCAGGTGAAATTAGTCCGAAATAAAAAGAGCGGCGAAGAAAACAATACAATAAGTGAAGTAGAAATAATTAAAAGTTACAAAGGTACATATAAAACAGGAAATAAAATTGATATTTCAGAGCCTTGGTTTTTAGTTGCCGGCAAATACCAAGCTGTTGAAAACTATATTGCCCTTGAAAAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //