Array 1 138122-140407 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018228.1 Calothrix parasitica NIES-267 plasmid plasmid1 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 138122 37 100.0 35 ..................................... ATGCGGCAATTAAGTTAGAAGTAGCTGAGAATAAC 138194 37 100.0 36 ..................................... GAATATTATGCCGAGCAAGTATCGGCAAGGGAAGGG 138267 37 100.0 36 ..................................... TGAAAACTTTCACAACCATTATCTAAAGAATAATTG 138340 37 100.0 34 ..................................... TATATTTAACCTTGTTTCCTTGTCTATCAGTTTT 138411 37 100.0 35 ..................................... ATATACAACGAGGACAAAAACAATCGTGGCTAACT 138483 37 100.0 35 ..................................... ATGTTTTGATTCCGTAGCAATGAACATAGCATTGG 138555 37 100.0 36 ..................................... GCTCCGTATTTCCCGTACATCAATAACTCAAATGAA 138628 37 100.0 36 ..................................... TTAACCTTGATTCCAACTGGAGTTAAGGTTATTTTT 138701 37 100.0 35 ..................................... AATATTATCTACTAACATTTACTAATGCTAATTGG 138773 37 100.0 36 ..................................... AACGTCTTGCTTCAACTGCTCCGCTTGTTGCTCTGT 138846 37 100.0 35 ..................................... AGCTTCAGGCGTGGCACGTCATGCTTACAATTGGG 138918 37 100.0 35 ..................................... TTAGAACTACTCACTAAACAAAGAATCCTAACAAA 138990 37 100.0 38 ..................................... TATAAGATTGGCTCTGATGCCTCATCAACTATTTCTAA 139065 37 100.0 34 ..................................... ATTATCTTGACCCCTATTAATAGCGAGTCGCAAA 139136 37 100.0 36 ..................................... TACTGAAACTTGATATTTAAGTTTAGAGTGGCAAAA 139209 37 100.0 35 ..................................... GCAGTAAACTTTTAGAGGAATTACTGCTTACCTTC 139281 37 100.0 37 ..................................... CTAAAGAATCTGTGAGGATTAGGGGTAACACCTGGGA 139355 37 100.0 35 ..................................... ATTAATTTTGCTGCCAAGATGGCGAAGCGGATGGA 139427 37 100.0 36 ..................................... GTCAAATACGACAATTCCCAAGAAGCTGAGTTAGTT 139500 37 100.0 36 ..................................... ACTTTGGTCTGTGTCATCTGGAAATAACCCCCTATA 139573 37 100.0 37 ..................................... TGTTGGTCAAAGATTTGGAATCTGAGATATACAAAAA 139647 37 100.0 35 ..................................... ATAGATTTATAGCCGCTTCAAGTGCGGCTGTAGCT 139719 37 100.0 35 ..................................... TAATCTTTGACTGTTTCTAATTGGGGGATATCGCC 139791 37 100.0 35 ..................................... TCAACAAGCTTAGGAGGCTCTTTAACCTCTTCTCC 139863 37 100.0 35 ..................................... GTAAATATTTCTCTACGTTCGGTGGCGATATCTTC 139935 37 100.0 35 ..................................... ATCATTCGTGACAGAACATTATCAAAAGCGCGAGC 140007 37 100.0 37 ..................................... CTTTCTTTCTATCGTTTGCGATTCCAGATTCGTGATT 140081 37 100.0 36 ..................................... CGGACACCGAGCCATTGAAGAGTTGGACGCGGTTCC 140154 37 100.0 35 ..................................... TTGTAAATGGGCGTTATTCATTTCAACAACGGGGA 140226 37 100.0 36 ..................................... AAAATTGATGCTGCCGACTTTGAACGTCAAATTAAA 140299 37 100.0 35 ..................................... ACTTCTGAATCAAATGTTGGCGCGTAAGATTCGTC 140371 37 97.3 0 ..............................C...... | ========== ====== ====== ====== ===================================== ====================================== ================== 32 37 99.9 36 CTTGATTTGAAGCGAATCCCGTTCTCGGGATTGAAAC # Left flank : TTTGAGCAGAAATATTTACAAAATCAAAGAATTAGATTTGAATAAGTTTAATTACGATGAAATTGAATTTTTACAGCTTTATTCCTTAGTTGTTCGAGCTTTGCGTCTGTGCGACCAAAGAGCAGTACAATTAACTTAACTCTCTCGGTGAGAAGACACGACCAAGGAAATCAAAATATTTTCTACTCTCTCTTCCCCCTCGCCAACAAAATCTCTTTTAACTAATCCGCTAGATTCAAGCTAACTAGATGTTGGACAATTGAAAACAATAGCTTTATTATTGTCCTATCAGCTTAATTTTTGGCAGACCGAAGCGAGGTCTAAAACCTGGGAGGTTTTGCCAAAATCGCCAGAACCACGACAATTCAATAGTTACAGCCTTTTTATGTTTGAGGTAAATGATAATTTGTTTCAATAAGGGTTCCTCAAATTAACTCTTTTTTGAGGTTTGACAAAACCCGTTGTGGAATATAGGCTATGTAAGGGTTTCAGCCTGCGGG # Right flank : CGTACCACGGGTGCTTACAATACCGCTTCACCAACAACTTGATTTAAAACGAATCCTGTTAAATCCAAAATTCAACATTGTGGAATACCCCTTTTCCACCTCCATGCTATAAATATTTCAGTAAACAACAAACGGCTTCAAGCCCGATGATAGACAGACTTTTTATTCCCAAAAATTTTAATAGTTATGCTGATACTTTTTTGATGTTGGGTTTAGCCTATCTTGTTGAATCCGCTCTCAAAGCAACTAAGCAAAAAACCACAATCCAACTGATTGACAAAGGTACGGCTTATGTAATCCAATTTAAAAAAGCTGTAAATATCGAATCAATTTCCGAACTTACATACTCAAATCCTTTCCCACCAGTCAAAGGTAAAAATACAGATATCAGTAAAATACCCGCAGAGGTTAAACCTTTTGACACTGTTGAGGAAGGTCGAATTCGTAAGCTTTATCGAGAGTTTTTGTTTCAACAGCGGGGAAAAACTGAAAATAGGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGATTTGAAGCGAATCCCGTTCTCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 147380-150630 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018228.1 Calothrix parasitica NIES-267 plasmid plasmid1 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 147380 37 100.0 36 ..................................... TTAGCTATTAAAGATTCCCTGGTTTCAGGTTTGGGG 147453 37 100.0 37 ..................................... TGAAAGAGATACCGATAGTTCCCAAGCCGAGAGGACA 147527 37 100.0 34 ..................................... TTAATTAATCTTTAAACCTTTAAAACCTTTCATT 147598 37 100.0 35 ..................................... AATATTATTCTCTGACTTTCACTAATGCTAATTGG 147670 37 100.0 36 ..................................... TCTTTTTTGCGCTTGTCGCCGGTAACTGTGATTGAG 147743 37 100.0 35 ..................................... TGTAGCGAGTCTAGAGATAAAAAATAAATACGAAA 147815 37 100.0 36 ..................................... CTATTGCTGGTAAACCGGTAACAATTAATCATCCTG 147888 37 100.0 36 ..................................... ATAAAAAACATTCCCGCAAAGGTCAATTAATTGTTT 147961 37 100.0 36 ..................................... GATTATCTCTATCACCCTCGTTAAAATCATCTGAGG 148034 37 100.0 35 ..................................... TGGGATTATTACACCGATGAACCATTACCGTGGTT 148106 37 100.0 36 ..................................... ACTCGTTATCATCATAATCCTCATCTGTTCCCCCAG 148179 37 100.0 36 ..................................... TGCTGCTACTCTTTCGTAAGCATCATTGTATTTAAG 148252 37 100.0 37 ..................................... ATAAACATACCGCCTAACCATCTACAACCACCATCAA 148326 37 100.0 36 ..................................... ATAGCTTAGATTCTAAAGCTCTGACAGCGCTATCTT 148399 37 100.0 36 ..................................... ACCAATGCCAGTACACCGGGACGAGGATGTACGATG 148472 37 100.0 36 ..................................... GTGGTAAGTGCATCGCTTAAAAACAATGCCATCTGC 148545 37 100.0 36 ..................................... ATGCTATACAGGTACTTCCCGCTTAGGCAGGTTTGT 148618 37 100.0 35 ..................................... AGCGCTACTTCTGAATCAAAGCTGCTCCCTATTGG 148690 37 100.0 38 ..................................... AACTATTTGTCGCTCGTTTAAGTCTGGATGCTCATCTT 148765 37 100.0 36 ..................................... AATGAAATGCCGTCGGCATTTGAAAATTAGGATAAA 148838 37 100.0 36 ..................................... TTTTCTGGTACTGTGAAATCTTCTAAAAGTCTCTCA 148911 37 100.0 35 ..................................... TTCGATTTAAACTTTGAGCAAATAGCGTTGTTTCT 148983 37 100.0 37 ..................................... TTGAAAGACACTATCCGTAGGCTTTAGGGCATTATAG 149057 37 100.0 47 ..................................... TCGGAAGTTTGGAACTTAAAGCCGGATGCGGCCGAAGGAGCTAGCGA 149141 37 100.0 35 ..................................... CAATTAGCCGAAATGGGAGAGGAATAAAGAGCAAA 149213 37 100.0 36 ..................................... ATAACAAACCACCTTTTGACAAATTAGCTGTCCTCT 149286 37 100.0 35 ..................................... ATTCAGACTGTCCTATATGTAAAAGGAAAAAAAAG 149358 37 100.0 34 ..................................... TTCGTGACCAGTTACTGCGTTTCTATAGGGGTTA 149429 37 100.0 36 ..................................... ATAACTTGCATCTCTTTCATTGAAAAACTTTTCTTT 149502 37 100.0 35 ..................................... AACAGTATTACTATCAAGGTGAATCTAAATCTCTT 149574 37 100.0 37 ..................................... CTGACAACTTCAGTTCTTCCCATGTTTGAGTTTTCTT 149648 37 100.0 36 ..................................... CTAAAACTAATTTATTATTAATAGATAAATCTATTT 149721 37 100.0 35 ..................................... ATCTTCTAACGTCTCGTAAACTCTAATTATTCCAG 149793 37 100.0 35 ..................................... TTTGGACTTACACCAAACCCGGATACTAGCATAGA 149865 37 100.0 36 ..................................... AACAAACCCACTAGGGATTAGTTAGTCGCGACATCT 149938 37 100.0 38 ..................................... TTCCGTTCTAAAACACCGAAAGCTGAAAAGTTTCAAGA 150013 37 100.0 36 ..................................... GCAAGTAGCTTTTATTTTTGAAGACAACAACCTAAT 150086 37 100.0 34 ..................................... TTTTTAATACCATGATGAAGGAAAGTATCTTTTA 150157 37 100.0 36 ..................................... TATCAGCTTTGGGTTATGAAACAGCTAGACCCACAA 150230 37 100.0 36 ..................................... TATCCAAGCCAGTAACGCTCGAATAATTGACTATGA 150303 37 97.3 35 A.................................... TAAGAAAGTAATTCCTGATAATAGTCACTTCTTAA 150375 37 100.0 36 ..................................... ACAGAAAACCAGGCAATCGCCCCCAATGCAATAAAC 150448 37 100.0 36 ..................................... ATAAGAATGAGTGCAATTCAACAGATTCAGGAAGCG 150521 37 100.0 36 ..................................... TTGTATTAACCCATAACCTAATCTTTCAGCATATTT 150594 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 45 37 99.9 36 CTTGATTTGAAGCGACTCCCGTTTTCGGGATTGAAAC # Left flank : TTACTTAATTATCTACGATTTACCAGATAACAAAGCAGCTAACAAACGTCGCACCCGACTGCATAAAATGCTCTCCGGTTATGGAACTTGGACGCAATACAGCGTGTTTGAATGTTTCTTAACTGCGATACAATTTACTAAACTGCAAATCAAAGTCGAGAAACTAATCAAACCGGAGGAAGATTCAGTACGGATTTATGTTCTAGATACAGGTTCTGTAAAACGCACCATCACCTACGGTTCCGAAAAACCTCGACAAGATGAAGTAATTGTTTTATAGTCTTGATATCAGCTTGATTTTTGGCAGACCGAAGCGGGGTCTAAAACCTGGGGGGTTCTGCCAAAATCGCCAGAACCACGACAATTCAATAGATACAGCTTTGTTGGATTTGAGATAAATGATAATTTATTTCAATAAGGGCTGTTGAAATTAACCCTTTTTTGGGGTTTGACAAAACCCGTTGTGGAATATAGGCGCTCTAAGGGTTTCAGCCTGCGGA # Right flank : CAATAGTAGTTACAACATACTTTAGCTAAATTCTTTTACACACCCATCTCCTCAGTAATTTTACTAAAATCATTAGCCACTTTTTCCTCAGCTATCTCAGCTATGTCCTCAAAATCCTGCATCATCTCATCTGCTTCACTGGCTAAGTTTTCTACCGACTGGGTTTTCAACTCTTCTACTAAGTTTTTGAGGATTACCAGACCAAACTTTTCGGTGTATTCTTTGGCTTTTCCTGTGGTGGGCATACTCAGATTGTACTCAGGGTTGAGTGTGATAGTAAAGATAAGATTAGAAATGTAGTTGGCAAAACTTTTGGTTCTGGCAAAAGCTTGTAGTTTCTCCCTAACTTCCTCCGACACCTCCACCATATTACAAAACTGCTTAAAGTTACTTTCTTCCAAAATAACGCTGTAGCTAAAAACTACGACCATATCCAGAAATTTCTCTAAATCAAGCTGCTTAGGCTTTTTGGGTTTGGTTTTACCAAGTTGTTTGATTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGATTTGAAGCGACTCCCGTTTTCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 497980-498952 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018227.1 Calothrix parasitica NIES-267 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 497980 37 100.0 35 ..................................... ATACAGCGTTCAACCCAATGAAAAATCCGATGGTT 498052 37 100.0 35 ..................................... TGAAAATATTAATCCATACATCGATTTTATCAAAG 498124 37 100.0 35 ..................................... GTGCAAAGAATGGAATCGATGAAGAAGGAAGTAAA 498196 37 100.0 36 ..................................... TCAAATGAGTCGTTATAAATTATTACCAATTTATCC 498269 37 100.0 36 ..................................... AATATGAAATACCGACTAATCAACCAGCATCTAATC 498342 37 100.0 35 ..................................... AGGCAAATCAACAGATTGAATGACCCTGCATTCCA 498414 37 100.0 34 ..................................... TAGAAGCTTTTGAAGGTCAATCATTTAATGAATT 498485 37 100.0 35 ..................................... ACTCAATTACGTATAGAAGGCAAGAAAGCTGATAT 498557 37 100.0 36 ..................................... GTTTTAACGGGAACTGAAATTTGATAGTTAGACATG 498630 37 100.0 33 ..................................... TCGTTCTTTTGTACTTCAACTTCCGTGGGATTA 498700 37 100.0 36 ..................................... ACTACAAAATATATACTAATTATTGTTTGTAATTAA 498773 37 100.0 35 ..................................... ATAAAATAGAAATATACAACCAAACACCTCCTTGT 498845 37 89.2 34 .....AA..AA.......................... TTCGCGGTTTTTTCCAGTCGCTGGGGTTCCGGTC 498916 37 83.8 0 ......A......A.....T..T..AA.......... | ========== ====== ====== ====== ===================================== ==================================== ================== 14 37 98.1 35 GTTTCTCATTTATGAATCCCGGAAACGGGATTGAAAC # Left flank : ACCCAACATTTCGATAACTGTAATACAATTAATTTCTGCGTCTTTTACTCACATTATTTCTAGTCATAATAATCTAGAGCTTATGCAACTTGATACATAATTATGTTTAAGCAGCTATTAACTTGATTTTCGACTGTATAATACAGGACTTACGCAAAGCAAAATTGTCATTGCGACCGAAACGGAGTGTAGGGAAGCAATCCCAAAGTTTCGAGAGATTACGTCGCTGTCGCTCGTAATGACCCAATTACGTTACTTTTGCGTAAGTCCTATAATAAATTAATAACTTTCTCGTATTCTGATAATATATTTTTGACGGGGGAAAGCGGGGTCGAAAACCCTGGAGTCCCGTCAAAACGCCAGAACCTTGACAATATGATAGTTTCAGAGTTTCATACTCTTGTGTTTCAACTTTCCTCAATCGCTGAAATCGGGTTTTTTAATTACCCCGTCAAAATCGGTTGTGGAAATCGCTCTAGTCAACGGTTTTGGGTGGCAGA # Right flank : CTTGATAATCATCAGAAGTTAAAAAAATGCTTATTTTATAAGCAATAATTAAAACTATGCAAAATTGGCAAGAACGTATAAGTATTAATCCTAAAGTATGTCATGGCAAACCTTGCGTAAAAGGGACGCGAATTATGATATCAGTTATCTTGGATAACGTTGCTGAAGGAATGACTTTTGAGGAGGTTATTAAAGAGTATCCACCATTAACTTTAGAAGATATTATGGCTGCTATTGCTTATGCCGCACAGCTAACTAGAGAAGAAGAATTATTACCTTTGCGATGAACAAAATGTTAGTAAAACTTGACGAAAATATGGCTCAAAGCCACGTTGAGTTATTGCAGCAGTATGGTTACGAAGCTGATAGAGTAACTGACGAAGGATTATCAGGTGCAGATGATGAAGTTGTCTGGAAACAAGTATGTGCTGAAGGACGATTTTTTATTACTCTAGATTTGGATTTTTCAGATGTTCGTCGTTTTGCACCTGGGACTCATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTCATTTATGAATCCCGGAAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 792198-794353 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018227.1 Calothrix parasitica NIES-267 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================================== ================== 792198 37 100.0 39 ..................................... TTAGGCACAACGCCACAAAACACGGGCTTTATTCAAAGA 792274 37 100.0 36 ..................................... TCGACAAAAGACCTTGCGGTTGAAGTATCGAACCCA 792347 37 100.0 35 ..................................... ACTCGATTTTGAGGCACAAAAACTTCAGGGAGATT 792419 37 100.0 35 ..................................... GCGATAATCCTTCGTTTTCTGGGTTATCGGTACTA 792491 37 100.0 36 ..................................... AAAATCTTCAATCGAACGAGTACTTACACCACTCGA 792564 37 100.0 35 ..................................... TTTGAGCTGTATCTTTGTAGCGTCGCTTCTAAAGA 792636 37 100.0 36 ..................................... AGTATCTCTATTTTCTGCAAACTTATATTTACAGGT 792709 37 100.0 36 ..................................... AGAATAAAAATAAACGAGCTAGATGAGAAAGGAGAT 792782 37 100.0 35 ..................................... AAACCAAAGAAATTGATTTTGAAGCCGACTAATGT 792854 37 100.0 36 ..................................... CATGCTGCTTTGTCTTAGGACTTTCTATTTGTTTGT 792927 37 100.0 35 ..................................... TGGATCTAGCGATCGCGATAATTCAAAAGGTAAGA 792999 37 100.0 37 ..................................... AACTTTCGTTTGCTAAGCTAGAAATTAATGAGAAAAT 793073 37 100.0 36 ..................................... TTCCGAGTTAACAATCAGATGGTTGGCTATATCTGG 793146 37 100.0 36 ..................................... ACGATTGTGGGTCGAATTCAAACCCATCCTCGTATG 793219 37 100.0 36 ..................................... TCTTACTGTATTAAATCCGCGCTCCAATTCATATAG 793292 37 100.0 38 ..................................... ACTAGCTTGTTAATAACTTGCTTTAGATGTTTGACCCG 793367 37 100.0 35 ..................................... TAGCAGCAGAAAGCAATATATCATCAGCTTGAGCG 793439 37 100.0 37 ..................................... CCACAGCAAATACAAATACCAGTCCCAAATAGAAAGC 793513 37 100.0 37 ..................................... CAAAATGTTAAAGTCTGAGAAGCTTAAAAAATATTTA 793587 37 94.6 36 ................................A..G. ATTTATCTATGATTGGTCAACTATTCCCATATCGGA 793660 37 70.3 178 ACAGT......C.A..C..TA...........A.... ATTAGTTTATAACTACTAATTAACTAATCTTCTGTCGGAACAGTTAGAAAACAAGAGAAATTCAGAAGCCCAAAATATAATCTATGATTTGATATGGTTATAGCGCAATAGGTCATCAGACTAATGTGTTGGGTTTCACTCCGTTCAACCCAACCTACGAAACTATTCCCATATCGGA G [793662] 793876 37 70.3 186 ACAGT......C.A..C..TA...........A.... ATTAGTTTATAACTACTAATTAACTAATCTTCTGTCGGAACAGTTAGAAAACAATAGAAATTCAGAAGCCCAAAATATAATCTATGATTTGATATGGTTATGGCACAATAGCTCATCAGACAAAAGTGTTGGGTTTCACTCCGTTCAACCCAACCTACGAAACTACGAAACTATTCCCATATCGGA G [793878] 794100 37 70.3 178 ACAGT......C.A..C..TA.......A........ ATTAGTTTATAACTACTAATTAACTAATCTTCTGTCGGAACAGTTAGAAAACAATAGAAATTCAGAAGCCCAAAATATAATCTATGATTTGATATGGTTATGGCGCAATAGGTCATCAGACTAATGTGTTGGGTTTCACTCCGTTCAACCCAACCTACGAAACTATTCCCATATCGGA G [794102] 794316 37 70.3 0 ACAGT......C.A..C..TA.......A........ | G [794318] ========== ====== ====== ====== ===================================== ========================================================================================================================================================================================== ================== 24 37 94.8 55 GTTTCTAATTTATGAATCCCGGAAACGGGATTGAAAC # Left flank : ACATCAAGACTGCTCAAGACATCTGGATTATTAAACGAAAGCAAATATCCATAGACTTTATCATTTCCCGCGATCATCGCTGGATATCCTTGAGGAAGCGAATATAACTCACCACGAGTCCAAGCTTTTTTTGCATTCACAACTTCTGAAGCACAATAAAATTCATAGTTTGCTTCACCTGGTTTGAGGGTTCCATAAACGAATACCCGTAGTAAATCTAGAGCTTTTGTACCCATGGTAAAATTAAACTTTAGCTTGCGACGAATATATTTACCGCGTTGTGACCTGACATAGACAAATGCTACACTATTTCTGACGGGGGAAAGCGAGGTCGAAAACGCCGATGTCCCGTCAAAACGCCAGAACCTTGATAATTGAATAGTTTCAGAGTTTTACGCTCGATTGTTTCAATGTTTCTCAATCGCTGAAATAGGGTTTTTAAACTGCCCCGTCAAAACTGCTTGTGAAAACGGCTTGGTTTAAAGGTTTCAGATGACAGA # Right flank : CATTAGTTTATAACTACTAATTAACTAATCTTCTGTCGGAACAGTTAGAAAACAATAGAAATTCAGAAGCCCAAAATATAATCTATGATTTGATATGGTTATGGCGCAATATGTTTATTTTCTCTTGTCTCCTCGTCTCCTTCTCCCCCAATCTCATCTTCCCATCTTCCCAACTACATATAAAATAGGTCTTCAGACACAATCACAATTGAATTAGGAGTATTTTCGGTGGATACCCGATATAACCCAGCAGATATTGAGCAAAAGTGGCAAAAGCAATGGGTGGAAAGTGGCTTAGATAAAACCATTAAAGATAGTAACAAGCCAAAATTCTATACCTTGGGAATGTTTCCTTACCCATCGGGGAACCTGCATATGGGTCACGTCCGTAACTACACTATTACTGATGTCATCGCCCGTCTCAAGCGCATGCAAGGGTATCGGGTGCTGCATCCTATGGGATGGGATGCTTTTGGTTTACCTGCCGAAAATGCTGCAAT # Questionable array : NO Score: 4.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.74, 5:0, 6:0.25, 7:-1.80, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATTTATGAATCCCGGAAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 3 1379824-1378992 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018227.1 Calothrix parasitica NIES-267 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1379823 36 100.0 39 .................................... AAAACAGCAACATCCAAGCAAGAGGATAGGTTTTAAAAA 1379748 36 100.0 36 .................................... GACAGAAAGCCTTAATCTTGAAGATAACACATATGA 1379676 36 100.0 36 .................................... TTCAACCAGAGTTTCATGGCGTGAATTATCGCTAGT 1379604 36 100.0 36 .................................... TTTTCGTCATCGGTTTCAGCTGTACTTAACAGCATT 1379532 36 100.0 35 .................................... GTTCTAACGAACTGGTCATTCGGTTGAACTTCATT 1379461 36 100.0 32 .................................... TGTAGTTAATTTCATGGAAAAACTCCAAAATT 1379393 36 100.0 33 .................................... TTTACAGTTGATACTATAGCACCTAATCCAATT 1379324 36 100.0 37 .................................... AAATTGTCTCTGTTTTTTTTATTCTTCAAAAAAGAAA 1379251 36 100.0 37 .................................... GTTAAAACGGTAAATCCATTTGGACAAGGTCCGAACG 1379178 36 100.0 41 .................................... TTATAACTTCCCAGTTGCTTATTTAAGCCGCATTGATTTAC 1379101 36 100.0 39 .................................... TTTACCGATATTCTCAGTTGCTTCAAATTCATTACGAAT 1379026 35 86.1 0 ...............T...........-..AT..T. | ========== ====== ====== ====== ==================================== ========================================= ================== 12 36 98.8 37 CCCCACCGATTGGGTCAATTCGGATTAGTTGGAAAC # Left flank : CCATAGATATATTTTCCGGAGATGTCTATTGTCATTCCTAGACTTTGTTTCGGTCGCAGTGACGAAATACCAGTTGCGTAATTCCGATTAAAGAATGTGTAATAATTCTTAATTCCTACTTAAGTGATAAGATGCCATAATTTTCTAAGAACTCAAATAAAATCGTCAAGCCGTCTGAAGGTGACATGGGATTTTATCAGATTTCTCAAGATGGCGTTTCCAGAGTCCTTACTATTGGTAGCGAACATCCTCGCGCACCGCGAAACTATTATTTGATATAGGTTTTAGCTCTACTACGGAGAAAAAGTGAACATCAAAATCGACGCACCTCGCCAAATCGCTCAAATGCCTATTCTTTCGTTGAGGTGTGTCGATGCCTTACTGGGTAAGGGTTTGAGGCTTGTGTTTTGTTCAGTTTTGCACGAAATACATACCGTTTTTCAGAGGTGCGTCGATTTGGCTCCTGAAACCCTTACTGGGTAAGGGCTGTTGAGCGAACT # Right flank : AGGACTTACGCAAAGCAAGTTTGTCATTGCGAGGGAAACGCAGTGGAGCGAAGCAATCTCGGCATTTCTGCGATGAGCCGCACCTTCGGTGAACGCTGAATACGTCGCTGTCGCATGTCCTAACGGACACGCTGCGCTAACGGGCCGGACGCAATTTCGTTATTTTTGCGTAAGTCCTAATAATTATTATTTATCAACAAACATTCATAAAATAATTTTTGAATAAAGCGCATATGCTTTTGATAAACAGCTAATATACAAAAAATTATTTTTAAGTTGATTTGAGCATATGACAAATAGATTGAAACGCGGAATTGTTCTCACAATTGTTTTTGTGTTGACGTTTTGCTTATCTATTAACTTGAGTCGAGTATTATCAACAGCTTCAAATCCCAGCTTTGATTATGTATGGGATATTCCCGCTTGGATTCCTCAACCAGTTATCCCGATTGATAATCCAATGACTGAAGAAAAAGTAAAATTGGGAAGACATTTATTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTCAATTCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 4289337-4287981 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018227.1 Calothrix parasitica NIES-267 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 4289336 37 100.0 36 ..................................... ACCGCATATCAATAACTAATGATTTGCTTTATCCGG 4289263 37 100.0 42 ..................................... CCCGTTCTATCTATTTCTAACCCTGCATCATTTCCCGCAGAA 4289184 37 100.0 34 ..................................... TTTAACTAACCATCCATAAAAAAAACCCGCTATT 4289113 37 100.0 34 ..................................... AGCAACCCGCACAACAAATGGATGCAAAACAAAT 4289042 37 100.0 38 ..................................... ACGGATTTCTAATGTCTCTACCTAAGATACTATAAGTC 4288967 37 100.0 36 ..................................... GAACTGTGACCGTGTAAAACTGGGCTGGCATTCTTC 4288894 37 100.0 36 ..................................... CCTTAAGAACAACGTACCTAGGTCGCAGCCCAAATT 4288821 37 100.0 36 ..................................... GACCAACCGCCACCACCTGATGACGATCAGGATAAG 4288748 37 100.0 36 ..................................... GAACTGATTATTTCAGCATATAATTGACTGAAAGCT 4288675 37 100.0 37 ..................................... GTGCCCATTCTTCAGTTGGCGCAACATTCGCCATATA 4288601 37 100.0 35 ..................................... ATAAACGATGACAATCTTAATGCAACATTGGAACG 4288529 37 100.0 36 ..................................... GATTTCAATACCTTGGAAGAATGAGTCAGAAGACTG 4288456 37 100.0 35 ..................................... GAGTCAGGGACAACCCCAACCAAGTTCACTTTACA 4288384 37 100.0 36 ..................................... TATAACGATAAAAAACCTATGACCTCTGAAGAATAA 4288311 37 100.0 36 ..................................... ATTCTATCGGTACATCACCACAGACTTCTATCTTAA 4288238 37 97.3 37 ..........T.......................... TGTTTTTGACTATATAAATACTATAATCTATTTTCGG 4288164 37 97.3 38 ..........T.......................... CAACAACCATTAGCAGTATAGAGAAATGGCAAAAGAAT 4288089 37 97.3 35 ..........T.......................... ATATTTTCTGCTTCAATGGTTATTGGTTGGGTGAA 4288017 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 19 37 99.6 36 GTTTCTTATTAATGAATCCCGGAAACGGGATTGAAAC # Left flank : CGGAGCTTTTTGAGATACAATACATTGTTGTTTGCATCCAAGCGGACAATTCTCCAATCCTGGATTCAATTGGGAGTAGAGAGGTTGTAATTGAATTTTCATCACAGTTAGTTTTGAAAATCTCGATAAATCTAAGGTAATGGCAAATTCTGAAAAGTCGTAGTCAAAAATTGATAACATCTCTGATTTGGCATGTATAAAAAAAGTTACATTACCCTAAATTGCAATCCTGGTCGGGATTTGAGTAGATTCAAAATTAGTCAAAAAAAATTTAGTTATCGACAAAATAGCTCTGATTGAATTATGCTTTTTCTGACGGGGGAAAGCGGGAGCGAAAACCCCGATGTCCCGTCAAAACGCCAGAACCTTGACAATAAAATAGTTTCAGAGTTTCATGCACTTTTGTTTCAATGTTCCTCAATCGCTGAAATGGGGTTTTTTATCTCCCCCGTCAAAATCGGTTGTGGAAATCGCTCTGTTATTCGGTTTCAGATGGCGGA # Right flank : AGTCCAAATATTATCAAGCTCGTAGTTGTCGCTGGTTTTGAGCGATTTTCATCTGAATCCAAAACCCGCTTCCAGGTAGGATTTTCAGATTTGTGTGTATACCGTAGCCTTAATAAGAATAGGGGAAGTGGGTGAGGTTTATAGAACTTACGCAAAGATAAGCTAATTCCAAAAAATTCCGGATTCCAACTACTATTTCAGCAAAATGTAACTAACATTTCATTTTTTTTATCTAATTTGTAATACTAGAACTTTTTTTAATTTTGTATCGAATAATATTAAATTAATGTTTATTGCAATTAATCCTCATTAACTTTTTATTGTTTAATTAAAGCATGAGGAAAAAAGGTTTGTATTTGTACTGTCTTTGCTCGAAATAATTGGCGCTAAAGCGCAACTACAAACAAAATTTGGGGCAATGCGTTTGTTGAGAATAGTTATTGGTTGTTGATGTAATCTTGCTTTAAGGAACTTGGTATGTCTATATACGGTGAAGCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTATTAATGAATCCCGGAAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 5 4300370-4301426 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018227.1 Calothrix parasitica NIES-267 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4300370 37 100.0 36 ..................................... AGTCATTTAGACCAAAAATTAAATTTTGCTCTACTT 4300443 37 100.0 35 ..................................... TTTTGTTCAATCATTGTAGGGAGGGAAGATATTAA 4300515 37 100.0 36 ..................................... TTTCAGCATTTCCTGAGCAACAATATAATCTGCATC 4300588 37 100.0 35 ..................................... ACCAAGCCTCTAACTGCAACTCAAAACTTGTCTGC 4300660 37 100.0 35 ..................................... CTGTCTCCCCCTTCTTGTCCCAAACAGTGCCAAGA 4300732 37 100.0 37 ..................................... CTTAGTTTTAGCTAAGCCTCAGTCGGCGTAAACCACT 4300806 37 100.0 34 ..................................... ATGGTATCTAACGGCAGCTACAGAGCTGCTAGGG 4300877 37 100.0 41 ..................................... GCTATTCATCCAGTGATTATCATTTAAACCTTTACAGACAA 4300955 37 100.0 34 ..................................... TCCAGAATTTAGCTCTAAAATGATGCTCGTTGGT 4301026 37 100.0 36 ..................................... CAAACAAAGAAAAATCAATAAAGATGAATTCAAAAA 4301099 37 100.0 36 ..................................... AGAACAAAGCTACAGCCCTTACACTGCAACTGTTAT 4301172 37 100.0 35 ..................................... TAACCTGTAGACACGGGTTAATTCCCGTGTTTCGA 4301244 37 100.0 35 ..................................... AAGTAGCTTGGGGTGATTATCAAAAATTAGGTCGT 4301316 37 100.0 37 ..................................... GACAATTCTTTTTTATAGCTTTAGAAGAATTAAAACA 4301390 37 97.3 0 ............................C........ | ========== ====== ====== ====== ===================================== ========================================= ================== 15 37 99.8 36 GTTTCTTATTTATGAATCCCGGAAACGGGATTGAAAC # Left flank : TGAAAACACCCTTTTACTTAATAATTTACGATTTACCAGACAACAAAAAAGCCAATAAAAGACGCACAAGACTGCATAAATTGCTTTCGGGTTACGGGGAATGGACGCAATATAGCGTGTTTGAGTGTTTTTTGACGAAAATTCAGTTTGCTAAACTCAAGGTACAGATAGAACAATTGATAAAACCGCAAGAAGATTCAGTTCGTATCTATATATTGGATGCTTATTCGATTCGGAAAACAATTACCTACGGTTCCGAACAACCCAGAGAGAATAAGACTATAATTTTGTAAAAGTCTGCTAAACTAATTTTTGACGGGGGAAAGCGGGGTCGAAAACCCTGGAGTCCCGTCAAAACGCCAGAACCTTGACAATATAATAGTTTCAGAGTTTCATGCTCTTGTGTTTCAATGTTCCTCAATCGCTGAAATGGGGTTTTTTAATTACCCCGTCAAAATCGGTTGTGGAAATCGCTCTGGTCAACGGTTTTGGGTGACGGA # Right flank : CTTGTTGTAATCAACATATAATACAGATGATAACCAGAAACTAGATTGAAACAACCATAAGCAAAATAAGCGAATATAGTGAGAAATAATAAAGCGCGACCGTAGTTTGTGTCTACAATCGCGCTTTACTATCAGATTTATTTAGATTGATGTTATTTCAGATACTCCTCAAATTGAGCTATATATCCTGGAAACGGAATTGAAAAAATGATTATTTTTGTTTACGAATACGTCTTTCTAGTTCTGCTTCTGCTTCCTCAACTGACATGGGAACTGAATCACCAGAAGCAGAACGTTTTCTATCTACATAAGTGTAAAAGGCTTGTTTATCTTCTGGATGCTGTCTAACATAAGTCAATAACTCTGCATCTGGCATTGTTTCATAATTAAGCTGGCTCATTTTATTAACACCCCCCCATTTGGGAATATTTCAATCTGTAAGGTTTCTCCAACCAGCATTACAATACAGTTAACACGCTCATCATATCTCACTAAATTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTATTTATGAATCCCGGAAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 6 4363862-4362944 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018227.1 Calothrix parasitica NIES-267 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4363861 37 100.0 34 ..................................... TACCATTGCCGACGTCTCTGCTCGCATAGATTTA 4363790 37 100.0 37 ..................................... CTTCAAAGCAATGCGTGCCCTACGTGTCCTATACTTT 4363716 37 100.0 37 ..................................... TCTAATGACATTCCTTCTTTGCCAGCTAGCAAAATTA 4363642 37 100.0 40 ..................................... TTCGCCAGTTTTCTCGTTTATTTTAAATTTTCCCGGTGGT 4363565 37 100.0 39 ..................................... ATAAAGGTCTATTACCGCACAATGCGAACCGTCGGGATT 4363489 37 100.0 36 ..................................... ATCCATATAATCAAAATTATCGGGGTCGGCTTTTTC 4363416 37 100.0 35 ..................................... TGGTTTGCGTATTGCTTAATAACTACTCTTCGGAA 4363344 37 100.0 36 ..................................... TTAAAGTCATAATATAAAACGAGCTAAACTATAATT 4363271 37 100.0 38 ..................................... TTCCGGTTTGTTTTCGGCTAGTTCCCAAATATCAAATA 4363196 37 100.0 35 ..................................... AAATGTTCCGCCAGGTGCGCTCAGCCCTTTTAAAA 4363124 37 100.0 35 ..................................... TTTTCTATCCCTGCGACAGGGACATACTATACAAT 4363052 37 97.3 36 ...................................T. ATTATAAAAATGGCGATCGCCATTTTTATATTCCTC 4362979 36 75.7 0 .......G.......G.....TTT-...A...A..G. | ========== ====== ====== ====== ===================================== ======================================== ================== 13 37 97.9 37 GTTTCTTATTTATGAATCCCGGAAACGGGATTGAAAC # Left flank : TTTTTCTATAATTTATAAAAAAAATCTGATTGCTGTTTACATAAGTTAGTATTCGATAATTGTCTATTTGACTCTGATATTTAAATAGTGAGATGATAATAAACTTTGTTTTCATCAAGTAAATTTTTATTTTGACCAGAATTGAGTTTGCTAAACTTTAAGGGACAGACAGAATAATTGATAAAACTGCAATAAGATTTAGTTTGTATTTACGTATTGGATGCTCATTGGATTTGGAAAACAATTAACTATAGTTCCGAGCAACCCAGAGAGAATAAAACAATAATTTTGTAAAATTCTGCTACACTATTTTTGACGGGGGAAAGCGGGGTCGAAAACCCTTATGTCCCGTCAAAACGCCGGAACCTCGATAATTGAATAGTTTCAGAGTTTCATGCTCTTATGTTTCAATATTCCTCAATCGCTGGAATGGGGTTTTTAAACTCCCCCGTCAAAATCGGTTGTGGAATTCGCTCTGGTCAACGCTTTTGGGTGGCAGA # Right flank : TTGTGACGATTCGAGAAAAAAATTTGTGTTGAATTGGTATTTTTCCTTCCTTATTATTGGGCATCTCTTGTTTCGATTGGTAATGGTTTGTAAGGTTTCTGTAGATAATTCACACCACCAGGGGTTGCAAACCCCTAGCTAATAGCACAAGTCCATTAAAATGGACTGGGAAAAATATTTCAATTGGATTTATTGAATACAAAATCTACATCAAATACTTTGCTCATCATTATTGGAAACCGTTTGTTTGAATTTGGAATGGTTTGTAATAATTATCCAATTACCAAATACCAAGGCTTTGATTTTAGTCCTATTTATAGGACTTTTGCTATTAGCTTGGGATTTACAACCCCAAGCAGGTGTGCAAGAAAACCCTCTATGTCAGAAAAGCAAAATCACTTTCCCCAAGTCCATCTACTCCTAGTAAAACAGCAACATCTTGATTCAAAATATTTATCACCGTCTTCCCATCATCAACCTTAAACGAAATATCTTCAAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTATTTATGAATCCCGGAAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 7 8662726-8662106 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018227.1 Calothrix parasitica NIES-267 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 8662725 38 94.7 33 ...................................TT. TAACTAAAATGATGGAAATTATCGAAGCTAAGT 8662654 38 97.4 35 .....................................A TATTGAGCGACGGGGAGCTTATTACCAAGACGGGT 8662581 38 100.0 35 ...................................... TTCAGTTTTCCATGTAGCTATTTCTTTTTTTTCAA 8662508 38 100.0 35 ...................................... AATACGAGTCATCCGTTTAGTGTAGTAAGTTTTAT 8662435 38 100.0 34 ...................................... CATTATTTTCTGTTTCAAAGAGAAAGTCTTGCGA 8662363 38 100.0 37 ...................................... TGTCGTTTTTGTCGAATTCTGTTATTTCCCAGATTTG 8662288 38 100.0 35 ...................................... CTTCTACTTCTATTGGGATTTCAAATTCTCCTACT 8662215 38 100.0 34 ...................................... TAAATTCATCCATTTCCGCTTCTCGAACATAGGG 8662143 38 97.4 0 ........................G............. | ========== ====== ====== ====== ====================================== ===================================== ================== 9 38 98.8 35 GTTTCTAATTTATGAATCCCGGAAACGGGATTGAAACT # Left flank : TTAAATTTAGTTAATTCTTTAATTTCAATTTTTAAAACCCTTACTATTTATAGCTTATAAGAAACCAGTACAGTTTTCTAATATTAGTAAAAACCGGAGAGTGACAGAAGAGGGATAATAATCAGGACTTACGCAACGAAGATTTGTCATTGCGACGGTCACTACGTATAGGGAAGCAATCGCAAGGTTTTTGCGATGATCCACACCTTCGGTGAATACGTCGCTATCGCTCGTAATGACGGAATTACGTTGCTTTTGCGTAAGTCCTAATAATAAACGAATAATTTTGTCGTATTTTGATAAGATATTTTTGACGGGGGAAAGCGAGGTCAAAAACCCCCATGTCCCGTCAAATATCCAGAACCTTGACAATTAAATAGTTTCAGAGTTTTCTATGCTGGGTTTTATGTTTCCTCGAATCGCTGAAATGGAGTTTTTTAATTCCCCGGTCAAAATCGATTGTGGAAATAGCTCTGTTAAAGGGTTTTAGATGGCGGAGT # Right flank : TGCGTATGCGTCATGTGAATGGATCTTCAATAGAATTTTGTTTGAATGAAGCATACATACAAACCTCACCCCGTCCTCCGGACACCCCTCTCCTTATTAAGGAGAGGGGAAAATTATTGTAAGTAAATGAAAACCACTTTTGCTTTATTTATAACTACAAAAAATCGTTTGGTGTTGTTTGATAACTACCAAATTCTTCAAAATATTCCAAGATAGAAGTACCAAAAGGGTCTTGAGAAACTTTACCACTGACTAACAAATCAACAATTTTATCGGGACCTTTGAGATGAGCGGCTGCAATTATTCCTGAAAGAGTAATTTTGATTGTTCTACGCTTTCCGCTCTCATTAAAAGTTTTTACTTGAGACAAATAAGATTCAATTGATTTACCTCTTTTGTTCATCAAATAATTGATATCTTGCCAATAAACACCAAAAGCTTCACGAATTGCTTGCTCTTGAACTTCAGGAGAATTCAGAAATTCAGCTTTACTATTGATA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATTTATGAATCCCGGAAACGGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 8 8899476-8899649 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018227.1 Calothrix parasitica NIES-267 DNA, nearly complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 8899476 32 100.0 39 ................................ AAACCTTCCTGCTACTGATTTGCGCCAGTATACGCTACA 8899547 32 100.0 39 ................................ AAACTTTTGCTGCTCTTGTCCCTGACCTTGGTCAGAGGA 8899618 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 3 32 100.0 40 CTTTCCAAACCAACTCCCCTCAGCGGGGATGG # Left flank : ACTTCATAACCCTCACCCATCAGAATTATTGTTTGTACGTAGAGGCTGAAAACCTAATTATTTGGCGAAGACCGCGCAACTACGAACGAAATTAAAGTTAGAGGGTTTGAGCGGAAGAAGAACTATTTACGGAAAACCTAATGTATAATAAACTACGTCAAAAGAGATTAATGACAACATTTATGTTGATTGTTTTATATTGCTTATTCTCTCTCCCCATCTTATCTTCCTCGATTTAATTGTTTCAAAATGTTTCTAAGTAGTTGACTATGAATTTGATTACACTTAGATTGTTTATGAAGTTGCGATACATCAAAATCGACGCATCTCGCCAGAACCTTGAAAACCCTATAACTTCGTTGAGATGCGTCGATAGCTTATACAGCAAGGCTTTCAGACGACGAAATTGGCGATTTACTCGGAAAATTTTTCCATTTTTTCGAGATGCGTCGATTGGGGTACCTCAAACCCCTGCTGTGTAAGGGTTCCAGAAGTGAACT # Right flank : GGTGCGACTATCAGTCGCTCACGAGAGTGAGTAGCTCGTAACTACTCCTGGTTAATGTCTGAACCAGTACCTGCCCGAAGGGGCATCACGGGTAACTATGATGTCTCAGAGCTAGAGGGAAATGCGTGAAATCTACTAGCCGCAATGTGGACGTAATGCTAGGGTAAAACCATTTTTGGGTTAACGTTCCGTGAATCTTTGACGAGGCACCGTGATGAGGAATTATCGAAAACGGCTGACACGATAACTGGAGTTAGATATTTCGCCCTATCCTCGGAATATAGGGCATCAAACAACTTCCGGTGTATAGAAGGAACCCAATATGGTTGTATCTCTTGTGTGTGATATGAAGGAACCCCAATGGGGTCTTACAACTAGAAACGATGTTGTAAGTAGGGATTGGAGCAATCTGGTTTTTAATTCCCCAGTGGGTGTAAGACGCTACAAGAAGCGAACGCTGCCATACCCAACGGTAAACAGAAAATCATAACTGGGCAGAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAAACCAACTCCCCTCAGCGGGGATGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //