Array 1 50118-51867 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906470.1 Veillonella rodentium strain NCTC12018 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50118 36 100.0 30 .................................... CAAGAAAAGGCCGTTTGAATATCCATATAA 50184 36 100.0 30 .................................... AAAAGTAGGGGCTGCCGTGCATGTTTATAT 50250 36 100.0 30 .................................... TAACACATGTTCAACAAAATCAACTAATAA 50316 36 100.0 30 .................................... AACTCAAATCTTCGAATTAGACTCGGAGAC 50382 36 100.0 30 .................................... ATCGAGATAAAAATACCGATAATACATCCG 50448 36 100.0 30 .................................... AGGGCTTGTCCGCGGTTTGAGTGATGTCAT 50514 36 100.0 30 .................................... GCCGCCGTCTCTCATATTCTCGAGAATGCT 50580 36 100.0 30 .................................... TAGCCGTAGTCGCTACGATAGCGCCACCTA 50646 36 100.0 30 .................................... GGTGATAATGTGGCTTATCTAAGATTTGAG 50712 36 100.0 30 .................................... GAGTTTCACGAGTTTCCGGATGAATCCAAT 50778 36 100.0 30 .................................... TCGTGTCTGTAGTATTTTTATCCCAGTTGC 50844 36 100.0 30 .................................... TATTGCTTTGGGGCGTTATTGGGTTGAATA 50910 36 100.0 30 .................................... CTTTACGCACGAAAAAAAGGCTGAACTCGA 50976 36 100.0 30 .................................... TGAAGTATTAATATATTTAGTTGATGTATT 51042 36 100.0 30 .................................... TGATGATTATTTGTAAGTTGGGAAACATAT 51108 36 100.0 30 .................................... AAAAGGTAAGAACGGCGATGACGGTCGTGA 51174 36 100.0 30 .................................... AACATGCCCTACATGTGGACAGACATTGCC 51240 36 100.0 30 .................................... GAACTTGATAGTGTTATTGCTGCAGAGTTT 51306 36 100.0 30 .................................... ACATGCTAGAGGATATACCTCTAAATGGGA 51372 36 100.0 30 .................................... CGAATGGTTGCGCAAACACGGCACATTCCC 51438 36 100.0 30 .................................... AGGGGTATCTATATATAATTCACATCAAGT 51504 36 100.0 30 .................................... ACTTGCGAATACATCGAATACGATGTATAA 51570 36 100.0 30 .................................... GAGTAGCAGAATTAGCCACGGCAGCAGCTA 51636 36 100.0 30 .................................... TATACATTTTTATCCCTCACTTTCTACAAT 51702 36 100.0 30 .................................... TGAAAATGTAATCACGGTAGAAATGAGTCC 51768 36 100.0 30 .................................... GAACCAACGACCATATGGCGTTTCGGAAGA 51834 34 80.6 0 .......................--G...T..T.GT | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.3 30 GTTTGAGAGTAGTGTAATTCTGTAAATCTCTAAAAC # Left flank : ACAAAGTTACAAAATCAGCTTGGAAAAGAAGCTTTGACGATGACGGAAGAAGTATCAGATATTATCAGTCGACTTCATGCTTTTTACTATGCTTTAGAATTCGGATACCCTCTTGCGATTCAACATAAACTTGAAATTGGAACAGCTGAGCTTATTAAATTAGGATCATTTAATTTTGAGGATAACCGAAACGGTGATGTTATGGATCTTATGTCTTATGTAGAAGTCGTGGATACATTGCTACACCCGAAATTGTATATCATGATTAACGTTGATCTTATCTTAAATGATGATGAGTTAATGTCCTTCTTTCAGACTATGTTAAGTCGTCAGTTGAGACTTGTATGTTTAACAACCGGATTTTTTGATAAAGAAAAGCTTGATAAAAGTATAATTAATGGGTATATTTTAGATAATGATTTCTGTGTGATTTGATGAAATTACAGAATTACACCTGGTGGTAGCCCGAGTTACTCTTGAGCCGCAAATTTTAATTTGGG # Right flank : TATTATTACTTGAGATCCCATGTTTAATCTTAAACAAACAATTGGTAAGCTCGTCTTAACACTGATCTGGTTGCTAAATTCATATGCAATTATTGAGCTATGGGCGTGTGAAGGTTGCTTTTATAAAGGGTACTTTGAACTTTATGAAATTATATTATGGTATATACTTTTGGGAAATTTTATTATCCTGCCATATCTGATTTTGTATTGGCGGACATTAAATCCTAATAAGAGACAACCCAAATATATCGATACAATAAAGCATTTTTTTAATTACTCTAATGAGGAAATGACCGCGACATATGTGTTAAAAGTAGTGCTGCATTTAATTTTTCGCTTTTTGGGACTAGTATGGTTAACAGGTGTTAGCGTAGCTGTAGTTGCATTTTTGACAGGATTATTGGGTTTTGCTTTTTTGATAGTAATACCATTTTTATAGAGTTTTAATGTAATAGTTTACTTGTACATTTATATTACCTTTAATAGTGTTAACCTCGGCC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAATTCTGTAAATCTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //