Array 1 62162-64074 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNHS010000014.1 Parabacteroides merdae strain 1001302B_160321_F2 NODE_14_length_138836_cov_35.8966, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================ ================== 62162 32 100.0 33 ................................ AGTTTGTATGCCTTGTCCAGCGATGCCGTACTT 62227 32 100.0 36 ................................ AAGAGTCTTCGACTCTGTTGTGAGCCGCCACCATTG 62295 32 100.0 34 ................................ TATTGCATGTTAGGTGGGGTTAATGGAGGTAAAT 62361 32 100.0 33 ................................ CCCAATCTGCATATCTCTAAGAATTGAGGCTAA 62426 32 100.0 34 ................................ TGAAATAACTCCTATTATTTCCTCTTTCAAAACC 62492 32 100.0 33 ................................ TGTTGTCGTGAATATTGTTAATTGAGTGAATAT 62557 32 40.6 80 .............NNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 62669 32 100.0 33 ................................ TGTTGTCGTGAATATTGTTAATTGAGTGAATAT 62734 32 100.0 33 ................................ ATTCGAAGTACCTGATTATGACGTTATCCAAGA 62799 32 100.0 34 ................................ GCAGAATACATATTGGTAACTTTCAAGGCCTTTT 62865 32 100.0 33 ................................ CTTTAATTTAGTTTGCTGCTCCGAACTTAAGAT 62930 32 100.0 33 ................................ GCAAGTGATATACTGAGGTTGCAGAGGCTTAAG 62995 32 100.0 34 ................................ TTTCGAAAATATACTTTGGATCTCGGCTATCTTT 63061 32 100.0 35 ................................ TTTTAGAACTATGGTAGCGTGATTTATGCAGCAAA 63128 32 100.0 35 ................................ AGTCCCTTGGTGGCTTGATGGGAGAATCCGCATCT 63195 32 100.0 32 ................................ CATCGTGCCATGAACCCACAATCAATGTCAAA 63259 32 100.0 33 ................................ TTGAAGGATAGGAACCTACCTTTGCCATCCGCA 63324 32 100.0 35 ................................ TTTACAACTGTAAGCCAGCAAGAGTTGTACCTAAA 63391 32 100.0 35 ................................ TATAATAGGCAATATTACCCTACAAAGCATATCGC 63458 32 100.0 32 ................................ TAATCTGGCTTTGGCTCGAGCAGCTTTCATTT 63522 32 100.0 34 ................................ CGTGTACATCTTTGCCATGCGTTGCATGACCTCG 63588 32 100.0 33 ................................ TGTTGTCGTGAATATTGTTAATTGAGTGAATAT 63653 32 100.0 32 ................................ ACCTTAATTTTATTGACATTTTATTTGATGTC 63717 32 100.0 32 ................................ TTTAATGAGCTTATTTTGAGCTTCCATGTTTT 63781 32 100.0 33 ................................ CCATATATTTTATCGTAATAATATGTCACGAGT 63846 32 100.0 34 ................................ AGCGAGATAGCCGGGCAGTGGAACCAAAATGAAA 63912 32 100.0 34 ................................ TGATACGGGGGCTTCTGAAACGGTTTATGTGGTA 63978 32 100.0 33 ................................ TTGGAACAAGCAGAAGGATCTCCCGTAGATGTA 64043 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================================================================ ================== 29 32 98.0 35 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCAGGAGATCCCGTCTCCCCAGAGCCTGTGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGAGACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTAGATGTTCGCATTCCCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CCACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTTTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCCATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACCCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACTA # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.40,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 69751-71698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNHS010000014.1 Parabacteroides merdae strain 1001302B_160321_F2 NODE_14_length_138836_cov_35.8966, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 69751 32 100.0 33 ................................ CAGTCGATGGACAATTCCATCATTTAGCGATAA 69816 32 100.0 35 ................................ ACATTTTTTATGTCAACAATAGTGAGCAAATCGGA 69883 32 100.0 35 ................................ AAGGAAAGCCAGCTAAGCACCTGGCAAACCGACCG 69950 32 100.0 33 ................................ AACAGGAGCAGGGTATTATTCAGCCTTGTCCAA 70015 32 100.0 34 ................................ TATGTCATATATTGCAGAGCATTATTTTGGCAAG 70081 32 100.0 34 ................................ TCAATTTGCCTTCGATCTCGGCGTCCGTACGGAA 70147 32 100.0 34 ................................ GATTGGGGGGTGGTACGTAAGGATAAGTGGCTTG 70213 32 100.0 34 ................................ TTATATTGAAGCGACTCTATCTCGTCAATAATAG 70279 32 100.0 35 ................................ GATGCACAATGGGACTTCATCTGCAAGAAATTCGG 70346 32 100.0 35 ................................ CCTGTTGCTTTGGTAACAAATAACGGGTTGAAGTG 70413 32 100.0 34 ................................ TCTTCCTCTGGCACTACCACCACTCCGGCAAGTC 70479 32 100.0 34 ................................ TTTACTTTTATCTCCAAATCCAATATATCTATTC 70545 32 100.0 33 ................................ ACATTACCTACCATAGAAAAAGATTTCGAACTG 70610 32 100.0 34 ................................ ACGCGGTATCATGGTTGTTATACTATCTGAATAT 70676 32 100.0 33 ................................ TGGCGCATTGCCATGAATGTAGACACAGCATCA 70741 32 100.0 32 ................................ ATTCTAATGAAAAAATGTAATGTTCCAGAATC 70805 32 100.0 35 ................................ CGGTATCAAGATGCTCGAAAATATAGCAAAGGGAA 70872 32 100.0 33 ................................ AATCGATCGCGAAGCGATACCTATCTGCCGAAG 70937 32 100.0 34 ................................ AACGTGGGTTTGCCGCTCAATAGTTTGCGCTCCG 71003 32 100.0 33 ................................ ACGGCATGGAGTTTTACTTATGCCGCCTATGAC 71068 32 100.0 37 ................................ CGGGGGTGATACTGCAAGCCCGCTACAGGAATGGACA 71137 32 100.0 33 ................................ TATATTAAGGTAATCGGGACATTCGCATTGGGT 71202 32 100.0 34 ................................ TATACAATATAGAAATTTGGATAAATTAGATATA 71268 32 96.9 35 ................A............... TACGCTGATTGCATCGGTTCTGGAACGCCTATTAT 71335 32 100.0 36 ................................ TGCAACTATTACCTCGAGTGCGGTAACGCATCTGAG 71403 32 100.0 33 ................................ CCAGTTTTTGGGCATCTTTATAAAGTATAGTCT 71468 32 100.0 34 ................................ AGACCAAATCCTTGCTGGTATTAACTCTGTATCT 71534 32 100.0 35 ................................ TGGAGTAAGGGTATCAATGACTACCTGAACGAGAA 71601 32 100.0 34 ................................ CTTTGAAGGGTTGGAAGATAGCAGTAAGCCGTCC 71667 32 90.6 0 ..TA.......................A.... | ========== ====== ====== ====== ================================ ===================================== ================== 30 32 99.6 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTTATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : CGAGTAAAACATACCTGCAGTCGACACAATTTATTAAATTATCAATTTCATTATTTTACCATGCAAGACAGAACTGCTCCACCCTTCTTCTTTACACGCTTTTGCATAATCGTCACGATGTAACTTATTATCTATCAGAAACAATTTCAAAAAATGAGTCCAAGTAAGCTTTTTCGATAAATCAGACACTATTTCAAGTTCTGGAAAATATACGCAGAACAACTCCATTTGAAGCAAGTGTCTAACTTCAAATTCTCTACCATAACGTTCCACTAATTCACGAGAAAGATATTTAAATGTATCTATCCGATGAAGTGTTGTCTCTTTACTGTAAAGATCTTGTTTAATTAGTCTACCGATTTCCCAATACAATATGTTTTTGTCTGCATTCAATCTTCGACTACCTTTCCTCTGTGATTTTTCAATTAAAAAAAGAATATCACGAAGTAAATCTTCCCTTCTTTTCATCTGTTTTGTGATTTTTATGTACAAAAATAAAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //