Array 1 118380-120131 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLRE01000030.1 Streptococcus iniae strain QMA0188 NODE_1_length_154296_cov_120.59_ID_1135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 118380 36 100.0 30 .................................... AGCGACTGGCTCAAATGGTGCAACTATCGT 118446 36 100.0 30 .................................... GCATGATCAGCGTTATAAGCGAAATAATAG 118512 36 100.0 30 .................................... ACCACCATCTTTTTGCTTGCTAGCTACAAT 118578 36 100.0 30 .................................... TTCTTTTCTGAAAATTTCAAATAAGTTTGA 118644 36 100.0 30 .................................... GCTGAAAAGACTGCTGTACTCGTTGGAATA 118710 36 100.0 30 .................................... CCTCACCATCAGGCAAAGACCTTGATACCT 118776 36 97.2 30 ..........G......................... AAAGACTTATAAGAGACTATACAAAAGGTA 118842 36 100.0 30 .................................... TCCACACTCGCCCATTAATGTGTGAGCATT 118908 36 100.0 30 .................................... ATGCACCAATCTCTAAAGACCTCTATCCAT 118974 36 100.0 30 .................................... TAGATCCCCGCATTTTTGACGAAAAAGCTC 119040 36 100.0 30 .................................... GCACTAGCAACAGACCAAGACTCGCACGGA 119106 36 100.0 30 .................................... TGCAACAAATAGCCTTATTATTGCTTTTAA 119172 36 100.0 30 .................................... TCCTTTTTGAGTAAAAGCTATTGTCTCATT 119238 36 100.0 30 .................................... GTTTGATGATGTTGTCTATACAAATACTGA 119304 36 100.0 30 .................................... TTTGATACGATCTATGTCAGCGAGCATTTG 119370 36 100.0 30 .................................... GTTTTAGCTTTTTTAAATTCTTCTTGCTTC 119436 36 100.0 30 .................................... GTGGCATTTTTGGAAATAGTTAGACAATTA 119502 36 100.0 30 .................................... AGGTGTCAAACTTATCACAGCTCTTGTTCA 119568 36 100.0 30 .................................... ACAATTATTTTATGTCAGATATTGATGAAT 119634 36 100.0 30 .................................... GTGTTCGCCGAATAAGTAGAATTAAGAAGC 119700 36 97.2 30 ..........................C......... CCTGCAAAAGATTCATATGCGATTAGTTAT 119766 36 100.0 30 .................................... CAAGTCTTGCAACAACAAGTATCCACTACA 119832 36 100.0 30 .................................... ATATATATCAATGGAAATACCAAAACGTTT 119898 36 100.0 30 .................................... TTAATTCCTTGGTTGTCAGTGTAATAGATA 119964 36 100.0 30 .................................... CGGTTTAGCTGCTCTTGAGAAGATTGTATT 120030 36 100.0 30 .................................... TACAACAGTACCTATAAGTGTGGCTACACC 120096 36 75.0 0 ................T.....TG..T.T.TTT..G | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 98.9 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG # Right flank : GGCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //