Array 1 25826-28599 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIBL01000020.1 Escherichia coli strain 08-A138-A entry20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25826 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 25887 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 25948 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 26009 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 26070 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 26131 29 100.0 32 ............................. ACTCTGATAGCCTGCTCAGAATCAAGGCGCAG 26192 29 100.0 32 ............................. CGCGATAACGCTCGCCCATCACGGTTTTCAAT 26253 29 100.0 32 ............................. CCAATATTTTTTGCATAAGATAAAGGTGATAA 26314 29 100.0 32 ............................. CGGCGACGATGATCCCCTCAGGTATTGCGCAG 26375 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 26436 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 26497 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 26558 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 26619 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 26680 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 26741 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 26802 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 26863 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 26924 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 26985 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 27046 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 27107 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 27168 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 27229 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 27290 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 27351 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 27412 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 27473 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 27534 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 27595 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 27656 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 27717 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 27778 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 27839 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 27900 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 27961 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 28022 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 28083 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 28144 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 28205 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 28266 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 28327 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 28388 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 28449 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 28510 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 28571 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1396-268 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIBL01000013.1 Escherichia coli strain 08-A138-A entry13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1395 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 1334 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 1273 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 1212 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 1151 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 1090 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 1029 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 968 29 96.6 32 ...........C................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 907 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 846 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 785 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 724 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 662 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 601 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 540 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 479 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 418 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 357 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 296 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //