Array 1 311727-312097 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QVSM01000003.1 Bordetella avium strain BA19 NODE_3_length_407280_cov_69.332, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
    311727	    32	 100.0	    36	................................	AACATATCGCCTCCAAAAATAAACCCGCGCTAGGCG 	
    311795	    32	 100.0	    35	................................	GAGGCCGTGGTCGAAGGCGACATCAGCAGCTATAT  	
    311862	    32	 100.0	    37	................................	AGAAACGTCAGCCAGTGCGTTTTTTCGCGCTTGCCCG	
    311931	    32	 100.0	    34	................................	TTATGCAGCTCCGCTCTCAACGCTACGACCGCGC   	
    311997	    32	 100.0	    37	................................	TTTGGGCGCGGCGGGAGGGATGACAAATGATGCTCAG	
    312066	    32	  87.5	     0	....................T..C..C...G.	|                                    	
==========	======	======	======	================================	=====================================	==================
         6	    32	  97.9	    36	GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC	                                     	       

# Left flank :   CATTTCTATGGAAGTGAGGCGCGATCATGATGGTTCTCGTTAGCTACGACGTTAGCACTCAGGAGAGAGCAGGGCTGCGGCGCTTACGCCATATCGCAAAGGCTTGCCAGGACTTTGGTCAGCGGGTGCAATATTCCGTTTTTGAAATTGAGGTGGATGCTGCGCAATGGGTGCAACTCAAAGACAGGCTAACGCAGATCATCAATCCAGAGCTGGATAGCCTGCGCTTCTACTACTTAGGTCAGCAGTGGCAAAGCAGGGTGGAGCATGTCGGGGCGAAACCCGTTCTTGATCTTCATGCGCCGCTCGTGTTTTGATGCTGGGTTTGCGAACCTGAAGTGACCGCCTTGTTCCAGTGAGGTTCGCGCCACCGCAAATCTATGTTTTTAAAAGGCTATTTTCCATAGGAGGGGGGGGTCCTCCGTTGGATGGCGCGAGTGCTCAGGGTTCGCGAAACTTGGCTTTTTTCTTGTGTAAAAAGATCACCTTATAAGCATGGC
# Right flank :  CCGCTGTGGGCTCCAGGCCGCTATGCCCACTGCTATGCCCCAAAGCCGCCTGCGCTAAGGCTAGGCTGCCTCGGCGTTCAGCCGGGATGCTGCGGCGGTGCTTCCATCCCCCGGTTTTCAAAAGCATGATCAGCGCTAAAAACAAAAGCCCCGCCGCATGGTGCGACGGGGCTGCTTTCTGAATCTGCTTTTTGAATCTTTTGGTGGCCTGGGGCGGAATCGAACCACCGACACAAGGATTTTCAATCCTCTGCTCTACCGACTGAGCTACCAGGCCAACCGAGACCGAAACTATACATGAAAAAATCGGTGCAAGCACGTTGTCTGGCACTTTTTTCATGATCAGGCAAAAAAAATCCTGAAGTTTCGTCAGATTTTGCTTATATATTGAGCAAATGCGGGTGAAAACCGGGCTGGCGGGAGCAGGGTGGGCGTTGCGATGATGTTGTGCGGGCGCAAACAATGGGGAAGGCCGTGCGGTGGGGGCGTCTGTCTCGGCT

# Questionable array : NO	 Score: 9.16
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [6,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.00,-7.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [58.3-31.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [10.42,0   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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