Array 1 45174-46530 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSTU01000013.1 Ligilactobacillus salivarius strain FZJTZ28M4.scaf Scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45174 36 100.0 30 .................................... AAAGTCATGGTGCTAAATACACTGTAAACC 45240 36 100.0 30 .................................... GGGTCACCAACTTATCAAGCAAGCTAATCT 45306 36 100.0 30 .................................... TGTTCTAGTTAATAAGTTTTTGTATTTTTT 45372 36 100.0 30 .................................... GAACCGCGGGTGTGACCCGAAAAAAATCTT 45438 36 100.0 30 .................................... ACGAGTAATTGATTTAATGGCAGACTTTGA 45504 36 100.0 30 .................................... AAAATTGAGCTTTAGCATAAGGTGTTGTAT 45570 36 100.0 30 .................................... ATGTCCTACTACATTCTGACCAAATTGACT 45636 36 100.0 30 .................................... AAACTTGACAAACCAAAGCACACTATATTG 45702 36 100.0 30 .................................... ACATGAGCATGCTACTTACTTAGTTAGTCA 45768 36 100.0 30 .................................... ATTTGTTTTTGTTGATAAATTTTGTACATA 45834 36 100.0 30 .................................... TCGAGCAATTAAATCTAAACATAAGACTAA 45900 36 100.0 30 .................................... AGACCTGATGAAGAAAATAAGTCAATAGTA 45966 36 100.0 30 .................................... CATATCCTTGATGTACTCTTGTGGCATAAC 46032 36 100.0 30 .................................... AAGTACGAAGAATTTCTGGCGACGTGCCGG 46098 36 100.0 30 .................................... TTAACCATCGCTAACATTGGTCGAGCTACT 46164 36 100.0 30 .................................... AAACTGTTTTATTAACGCATTAATGAAGAA 46230 36 100.0 30 .................................... TATCACAGAAAGTTCTCCAGCAACATTATT 46296 36 100.0 30 .................................... TATCTAATGTATTTTATGGATCACGTCAAA 46362 36 100.0 30 .................................... TTGCTGTCTTACACCTATGTCAATTCAACT 46428 36 100.0 30 .................................... AAGTTCACACGAAAAGCCCTATGACAATAC 46494 36 86.1 0 ..........T.........T...A......G.T.. | C [46527] ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.3 30 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTAATTAAGAAGATTATTGAAGACATCACAGACGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCATTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTGCATGTGGAACTAAATAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAGGTCTTGTTAAGGCGACTAACTCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAGCTGTGATAATTACTACATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACG # Right flank : ATCTGCGTTCAGTTGGTGTCTCAATGTAAGTACTTTATAATGAGCTGAATATGAAAAAATTTGAAATCCCCCTATACTATTATCATAAAAAGTATAGGAGGATTTTTTATACAATGGAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //