Array 1 6893-4301 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPST01000006.1 Corynebacterium ulcerans strain BR-AD 2649 Contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6892 29 100.0 32 ............................. GAGGAAACCCTGGACCCCGCTCGGAGGCAAGC 6831 29 100.0 32 ............................. CATGTTCCGGTGATTTTTGCGGTGAGTTTCAT 6770 29 100.0 32 ............................. ACCATCGATTTGGTGGCGGATTCTCTGCGTAA 6709 29 100.0 32 ............................. GGCTTCTTCGATCAGCTTGGCCCGCTCTTCCA 6648 29 100.0 32 ............................. AAACCGTGTCATTCACCAACACACCGTCCCCT 6587 29 100.0 32 ............................. ACCCTGGAAGAGCTTGCGGAGCGGGTGAAATC 6526 29 100.0 32 ............................. CCGCTATTCGCGCCGGGTCATTGATTCAGTCT 6465 29 100.0 32 ............................. ACCCTGGAAGAGCTTGCGGAGCGGGTGAAATC 6404 29 100.0 32 ............................. TTCAGCCATATGTCCAAATAAACCGCCAGGAA 6343 29 100.0 32 ............................. GTCATCGGACTTATGCAGACTTGGGAAGCCGC 6282 29 96.6 32 ............................T GGTCAGGGAGATATCCTCGGGGGTGAGGAAAT 6221 29 100.0 32 ............................. CGCAGGTAAGCCAGCGGAAAAGCAGGATTCTT 6160 29 100.0 32 ............................. TTTTACATCGCCTGCCCATACTGGATCCCATG 6099 29 100.0 32 ............................. AGACTTCCCTGCGGTCAGGCGGTAGCGGATGC 6038 29 100.0 32 ............................. TCATCAACCGTAGAGCGCAAAACCTGTATGTG 5977 29 100.0 32 ............................. CAATTTTCCTTGCAGAGTATGCAGCAAGGCCC 5916 29 100.0 32 ............................. CAATTTTCCTTGCAGAGTATGCAGCAAGGCCC 5855 29 100.0 33 ............................. CCAATTGATCGGTGCTGCGGTCTTCGCTTTCAG 5793 29 100.0 32 ............................. TCCCCGGGGTCTGCAAAATCAACAACTGCAGG 5732 29 100.0 33 ............................. CGGTATTGAGAGGGGCAGGAGTGCGGGATTAGC 5670 29 100.0 32 ............................. AGCCCACTCCCCCAGGATCATCCGCCGGTAGA 5609 29 100.0 32 ............................. CATATTCTTCGACTAAAACCTTCTCCGCGGCG 5548 29 100.0 32 ............................. CACACGGGAAAAACCCCCGAAAAATCACCAAC 5487 29 100.0 32 ............................. GATGATTGGCTATACAACGGAGAATCCTGCAC 5426 29 100.0 32 ............................. GAAAACGACGCGCAGCGTTACTCGCGTGTGCG 5365 29 100.0 32 ............................. ACTATTTTTTTCCAAAAACTCACCCCTGACGC 5304 29 100.0 32 ............................. CGGCCTGCGACGTTGCTGGATGAGTATCAGGG 5243 29 100.0 32 ............................. ATGCTCAAAATGAGCCACGCGCTAACCGTCGT 5182 29 100.0 32 ............................. ATGTGGATACCCACGGGCCAGTATTGGGCGCC 5121 29 100.0 32 ............................. CACCACAGGCAAAAATGGAAGGGGAAAAGGAT 5060 29 100.0 32 ............................. ATGAGGCAACGCAGAAGCTCTTCAACGGCAAC 4999 29 100.0 32 ............................. GAATATGCCACAGGGCAGGTTTGATATTCGTG 4938 29 100.0 32 ............................. TAAGACGGCTTTGCGGCAGCAGCACATACAGG 4877 29 100.0 32 ............................. AACATGCCACCACCTTCATCGAAACCCACCCC 4816 29 100.0 32 ............................. TGCCATGAGCAGGGAATCGCCATCGTCGTCAT 4755 29 100.0 32 ............................. CGATCAAGAAATTATTGAGCACTTCACCAACA 4694 29 100.0 32 ............................. TCGTCAAAAGAGTCGCAATACTCTAGGTTGCT 4633 29 100.0 32 ............................. GCCGAGGCTTTAGCAGCCCGCCGACTTAAGAA 4572 29 100.0 32 ............................. CGGAAAGGTTTGGAAAATGACCATCAATTACG 4511 29 100.0 32 ............................. TCAGCAGCAGAAGGAATCGCTGCGTGGCCCAG 4450 29 100.0 32 ............................. GGCTACTGGATTCAGGCAGAAGTGTTCAATGC 4389 29 100.0 31 ............................. TGGGCCGATGAAAGCAGGTCCGGCTGCCCAA 4329 29 86.2 0 .CC................G........A | ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.6 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : CGAACACCGCCAACCCCAGAAACCCTCGAAACTGCGACTGTTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGACCTGAAATAGTAATAACAGCCGGGGTCAACTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCACATCAACGAATGCGCACTTGCTCCCCATCCTATGGGGCAAAGTACCTTTCCTTCGGTCTTGTGGTTTTACACCTTCTTGCGGATCCTGCGGGGGTGTGCAATAGTCTTTCCCACTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGACTTCTTTGGTGAGTAAACGCGCAGGTAAGTTAGT # Right flank : TAGCTTGACACTTGCTAGATATATAGTTTGTGTCCACCACTACGGAGGTATAAATGTCCATCACACCAGAACGGGTTATGCAGCTTTTAGGTGAAGGTATGACCCAATCCCAGATTGCTAGGGAATACGGGGTTACTCGTCAATACATCTTTACGCTTGCCAAAAGGGGCGGGCATGAGGCTAGGGAAATGGAATATATCAAAGATGATATACCTTGGCCAAAGGTTAAAGATAAGCACCGTGATAACACAATCTATAAAACACTACGAATCCACGCCCGCTATATGGAGCGGGGACAAGAGGGGGTACGTGGTTCAAGTTATGTTAAACTGCTCGGCATGTACCGAAAACTTGTTCGATTCAATCAAGTTATCGACTACGACGAGTCCTACCCACCTGTAGAAGGTTTGTCGAATACAGGCGGGTTTATGTACGTACCGAGGTCTCCAGAAGACGGGAACCTCATTATCAAAGTAAAGCCCGGTGTGCGAATCACGAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 74346-75920 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPST01000004.1 Corynebacterium ulcerans strain BR-AD 2649 Contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 74346 36 100.0 38 .................................... GAGGCAGCCTGGAAACACATCGAACCCGTTTTTGGCAG 74420 36 100.0 38 .................................... GAGGCAGCCTGGAAACACATCGAACCCGTTTTTGGCAG 74494 36 100.0 37 .................................... GAGCGTTTAAGCAGCGCCATGTGGCGTTACCGGCAAT 74567 36 100.0 37 .................................... ACGAGGTGAAGTTTGTTGAGGCGGCGGTCGACCTTCC 74640 36 100.0 37 .................................... AATTCAACTACCGCCCAATTCGATGTTGTTTTAGCTG 74713 36 100.0 38 .................................... ACAGAAGCTCAAAGGTCTAACGGTCAACGAACGCGCCA 74787 36 100.0 36 .................................... CAGGCCATTTTGTACAGTCGCATAGGGCCTGCGGCT 74859 36 100.0 40 .................................... AACTAGCGTTCGTGTGTTCTTTGCGTGGGCTGTGCGTGAG 74935 36 100.0 35 .................................... GCTGGACCTATTCAGTGGGGGTGGCATAAGCGCAA 75006 36 100.0 37 .................................... GAACCAAAAATTCCGCCGGTGCCACCGCCGCCGCCGT 75079 36 100.0 39 .................................... AATTGCTGCCCCGCGTCGGCGCAGACAATCATCCTTGCC 75154 36 100.0 39 .................................... TTAGTGATTTCGGAGGGCTCCGGATTTAGTGCTATCACG 75229 36 100.0 35 .................................... TGGTAGGTCATTTCGTATTGGATGGCGCGGCAGTC 75300 36 100.0 35 .................................... TGGTAGGTCATTTCGTATTGGATGGCGCGGCAGTC 75371 36 100.0 38 .................................... TGCCCGTTGAGTCCATCGCTGAGGTGAGGGGTTTCCGC 75445 36 100.0 35 .................................... TTTCAAGGGGCTAAAGCTACCGGGCGCTTTTATTT 75516 36 100.0 37 .................................... TCCTATTTTGGTGCATGAGGGTACTGCTACGATTCGG 75589 36 100.0 38 .................................... GCGAGAAGGGAAAAGGAACCCTCAGCCAAAACCGAAAG 75663 36 100.0 36 .................................... GGCGTTGCTTGAAGCGTTCCATGCTGATGCGGTCGC 75735 36 100.0 40 .................................... GCGATGCCGAGTTGCGCGGCCTGTGCCGTGAACTGATGGG 75811 36 100.0 38 .................................... ATATTTGCGCGGCGTGCAGCAGCACGAATCTTCGCTAG 75885 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 22 36 100.0 37 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCGAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCATTATTAATGCTGAGGAAGATTCCGTTTTATATTGCGATCTTGGACTGCTGTCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATGGGGCAACAATAATCACCCCCTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGTTAAGTCAGTTAAAATGAGGGGGCT # Right flank : TGATGCTGTAGGGCTGCGCGGTCCTCATCGGACGCGCTGGTGCTCGAGATCTGCGCAATGGCGCGGGCTGTTGCTAAGCTCATAGCCGTGCTTTCTCCCCAGATGGTACTGGATGATAAGCGAGCGTCAGGTAGTTGGAGCTGCCTGGCGCTCATTCATTTTTCAAATGTCACCACACACCCCTACGGGGCATGTACGCACTTCGGATACACGACTCACATTTGCGCTGTTCAACGCCACAGAACGATATCCAGTCCATCGTCTAGGGCCAGCAGCTAATACTGCTTTATTTCCGTAGACTGCCCAATATGAAAGAGAAAAAACTATCGTCCTTAGTATTCGGAAACGTTATCCTTGAATCTCAGCTTTTGGGGACAACCATCCGAATATACGCTGATGACATGCGGTCTTATTCTTTTCGACCTAGCCCTTATGCCTCCCTCTCCGTCCCCTTAAACGAGTTAAAAGGGCAGCTTCAGCCTGACCACGCCGAAGCTCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 146833-146983 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPST01000004.1 Corynebacterium ulcerans strain BR-AD 2649 Contig4, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 146833 29 100.0 32 ............................. CGCCCAACCCCACTCCTCACGGCCCGTGGGGC 146894 29 100.0 32 ............................. TTTCACATCGCCCGCCCATACTGGATCCCATG 146955 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 CTTTTCTCCGCGTACGCGGAGGTAGTTCC # Left flank : CACATTATGATGGAGATCCTCACTCCACATCTCCCCGAGCGTACCGACGACCGCCTCATCGGCGGAAGAAACCACGAAGTCCCAGGGCACACACAATACGGTGGTAAATAAATGTTTGCGGTCATCCAAGGACATAACCTTCCGAACCACCTCAACGGCTACCTCAGTCGCTTCCTTTCCGAAGTAGACGCAGGTCTTTATGTAGGAGTTCTGTCCAGAGCCGTCATGGAAAACCTTTGGGAAAAATGCCAATCCGTAGACCTAGCAGGATCTCTTACTCTGATTCACCCACAATATGATGCTGAGCAAGGGTTCAGAATCCGCACAACAGGAAAACAACGGCGCCCCGTCGTTGATCTTGATGGTCTTTTCCTCTCTGCTCGTGGTCTAATAGAAGACGTGCGTTTTGCTGACCCCCTGGATGAAGCCGATGCAATTATTCCAGACGAAGTTTTGGAGGATTTTTGCCCAGAGAGTGAGTAAACGCGCAGGTTATTTAG # Right flank : CAAACGTAGTCCCTAAAGGCTGGATACCGATGCAGGATTATATTGATCGGTTCAATACTAATGTTTTTATTGAGCCTTCCACTACGAAGCTTTATCAATCACGCTCTGGGGCTAAGGCCCGCGCTGATCTTCTTGAATCCTTTGGGTATAAGGCGATTGTGCAGCGTAGTGCCCCTCTGGTGTGGCCTGAAGGTGATAACACCACCGTGAAGACTGCCAAGATCAACGAAGTTTTTGAGGCAATAAAACACTGGTCAAGCATGGTGTTGTGAAATCCGCTGACGAACTTCTTTAACAACTGGCGGGAAATGGGCAAAAGAAAAGGCCCCAGTCACCACAACCGGAGCCTTAGCCAAAACCAAGTTCCACTATACACGACCTTTTAAAAAATAAAAGCCCGAATGGTTTCCCGTGGGTTCGATTCCCACGCCGGGCACTACGCACCCCCTCGCATATTGGGGGAGTGCAGGTTATTTGAAAATTCAAAAGTGAAAGCGAAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTACGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //