Array 1 3107605-3106662 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDDW01000001.1 Nocardia sp. FDAARGOS_372 pCNH_693.contig.0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3107604 29 96.6 32 ...............T............. ACGATCAGCGGCTGTGTGCGCGAACCGGTGCC 3107543 29 100.0 32 ............................. TCGACGTAGATCCGCGCATCCCCGGCGGCGAT 3107482 29 100.0 32 ............................. AGGTGATCGGCCTCGGCGTGCAATCCTCAGTC 3107421 29 100.0 32 ............................. ATTCCGGAGAGGGTGTCGGGCAGGTCGTAGAG 3107360 29 100.0 32 ............................. ACGCAGAACAGTTGACGGCAGCGGCGGCATCG 3107299 29 100.0 32 ............................. GAGACCACCGACCACAACACCACCGACAGCAA 3107238 29 100.0 30 ............................. TTCACGCACGGCTGCCTGTACGCGGACTGG 3107179 29 100.0 32 ............................. GAGGCGCTGTCCGCGCGACGAGAGCTGGCGCG 3107118 29 100.0 32 ............................. GGGGTGGCGCCGATCTGCCCGCGCAGGAACGC 3107057 29 100.0 32 ............................. GTCGCCGCTGGACTTCCGCCCGACACCGGCCG 3106996 29 100.0 32 ............................. AACGGCACCGAGGGCTGGTCCCCGCGCCAGTA 3106935 29 100.0 32 ............................. CGCGGCGACGTCCCGGTGTGGTGGTACGGGTT 3106874 29 100.0 32 ............................. TTGGCGGACGACGGCCGTGCTGGTGCGGTTCT 3106813 29 100.0 32 ............................. CGCCCCTGAATCCCGATTGGCCGCCACTGTGG 3106752 29 100.0 32 ............................. CCGATCCGGGAGGTGACCCGGAAGGCAGGCAA G [3106744] 3106690 29 93.1 0 .........C................T.. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTGGGCACCGCGGGACGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGTTGCCTTCGTGCGTCTAGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGGGACGACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : GACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAATCCCGCGACCTGGTCGCGTTCGGGCTGGGCAAGGTCGTACCCGCGCACGCGGAACCGCCTTCTTCGGTCGGCGCGGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATGCGCCGGTCCCACCGGCGTCCCGCGTCCTCGACCCTCGGGTGCGCACACCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGGCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATGCGCAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3218034-3217524 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDDW01000001.1 Nocardia sp. FDAARGOS_372 pCNH_693.contig.0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3218033 28 100.0 33 ............................ CTCATCCACCACCATCAGCGACGTGCGGCCGTG 3217972 28 100.0 33 ............................ CGACGCGATGGCCCTTCTCGAGCAGGAAGGGTT 3217911 28 100.0 33 ............................ CCAGCCGCAGACGACGACCGCCGAGCAGGTCCG 3217850 28 100.0 33 ............................ CCGCCTGAAACCATCGCAGAGAGGATCGAGCGC 3217789 28 100.0 32 ............................ CTAGGCCACCTTGCGGACCCATCCAACCAACA 3217729 28 96.4 33 ........G................... CGGCGGACCAGCGAGCCCACCGAACTCCCTTGG 3217668 28 100.0 33 ............................ GTAGACGCTGGCGACCGAGTGCCCGAATCCGGA 3217607 28 96.4 26 .............A.............. CTGGGTGGCGACGATGACCTCGGTAC Deletion [3217554] 3217553 28 100.0 0 ............................ | GA [3217526] ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.2 32 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAACCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCACGTGCCCGGCCCGACCGAGTCATACCTTCCGTGCTCCCGCCCGTGTGCGGGGGGGGGGGTGAGCCCCGAAGCTAGTTGCCCGTGAGTGGGACCGACGCCTGAAACGAGCACTCGGTCGAAGACTGTCGCGACCCGAACCAATACGTTGTCGTCCACAACCGGCGGCGGCGAGACGCGAAAGGTCTTCGTTCATGCGGACTGCTGACTGGGCCGTGGGTCACCGCGATCGGGGATTCTCTGCGATGGGTCCGGTCGCAGCTCCGCGCGCAAAGGCCGGCGTGAGGGTTGCGCGCCGACCCACACCGGCTTGCGGAGGCGGCCGCGCCGACGTAGGTAACGACTGCATACACCTCACCCCACGGAGATAGCTATCTGATTGCGGCGGGGTCGTGTCGAGCCCGGCGGCGTTAGCCTTGGTACTTCGCCAGAGCAGGAGCCTCGAGCAAGGAGGGCCGCCATGCGCGGACGGTTTACCGGATTCGCCGCTGCTTCGGCCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3997232-3997382 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDDW01000001.1 Nocardia sp. FDAARGOS_372 pCNH_693.contig.0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3997232 29 100.0 32 ............................. GCCTGCGCGTTCGGTGACAGGTCGGCCAGCGC 3997293 29 100.0 32 ............................. CCTCCCGGAAGCGCGTGCACGCCGCCGCCGCT 3997354 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGGATCACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCGTGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAGCACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGCTGTCCGGGCTGCGGTGGTCATGGGTCGTCGCCGGACCAGGCACGTGGGGCGTGGTCGGTCTCTCACGCGCCCCGTGGGAAGATCGCCGGCAACTGAAATGGGATCCCGCAGGATCGGCGACGTACGATGACGGCGGCCTGTCCGTCTTGTCCTTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : CGTCACCAGAGCTAACGGGGCGGTCCGGGTGGTGGTCACCGACGGGAGGGACCGGATTCGGCGCGGTGGGGTCCTCCCGAATCAGGCGGTGGCGTCGAAGTGCGCTATCACCTTGGTCGGGCGCAATCGCACGACCAACTCACCGGGCACCGCGTTGCGCCGACCGAACTCCTCGGCCCGCTCGGCGCCCATGTAGCGCCCGCCCAGCGCGGTGGCGGTGCGCAGCAGCTCGTCCGGATCCTCGGAGAGCGTGACCCGTCCCTGCACCTGGACCGAGGCATACGGCGGCTCTTCCAGGTCGACACACAGCGCCACCCGATCGTCGCGCGCGAACGCCTTGCCCTTCGCCGTGTCGCGGCCGGTGTTGAATACGATCTCGTCGCCCTCGACGAGGTACCAGATCGGTGTGACCACAGGTCTGCCGTCCGACGCGACGAAGGCGATCTTGCCCGTCCGCGTCCCGTGATCGAGGAACTCGCGCACCTTGGGATCCGACAATG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //