Array 1 452496-453666 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIXM01000007.1 Cronobacter sakazakii strain MOD1_5-21G csak5-21G_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 452496 28 100.0 33 ............................ CTGTTGTGCCACTACCAGCGAACGGATCTAACA 452557 28 100.0 33 ............................ TCATTAACACTTTCGTTCAGATGGGGGTTGAAT 452618 28 100.0 32 ............................ AAATGCCTCGATGCTGGCGGCAATTTCCTCTG 452678 28 100.0 32 ............................ ATGTCTGGCGGCGGCAGGCGCCCAGATTCTTC 452738 28 100.0 32 ............................ GCCTGGTTCCTGCTCGACACGACGCAAACGTT 452798 28 100.0 32 ............................ ACAGCGTCCTGCATCGTCCCGGCCAGCGTGCG 452858 28 100.0 33 ............................ GTCGACCGCGCGAAATTCACCGGCGGGCAGCAA 452919 28 100.0 32 ............................ TCTGCAATCCCCGCTGAGGCGCTACCGCCGCC 452979 28 100.0 32 ............................ AGCAACACCAGCCCCGCGACGCGCTCCTGATC 453039 28 100.0 32 ............................ GTTACGACGCCGATCACGTCGAGTTCGTTTAG 453099 28 100.0 32 ............................ AGGATATCGGGCTAACCGTCGCTATCAAATCC 453159 28 100.0 32 ............................ GCAGCGGCTCCACCGAATGAACCGATTGATGC 453219 28 100.0 32 ............................ AGGGCCGGAACTGCCAGCTATGTTGACGGCGG 453279 28 100.0 32 ............................ ACAAGTGCCGGATACAGAGCCACGTAATGACG 453339 28 100.0 32 ............................ TTACCCGCCGCTACGGCCATATTCAGCGCGGT 453399 28 100.0 32 ............................ TTTAGCAAACGCCAGCAGCACGGCGAGCTGTC 453459 28 100.0 32 ............................ TCACCCACACTCCACGGCCCCAGGTATAGCGA 453519 28 100.0 32 ............................ TGAATCCAGCCCGACACCGTTTTCTCGTCGTC 453579 28 100.0 32 ............................ GAGGCCGATAGATTTCTGCGCCTGCGCCATAA 453639 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTATAAGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : AACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAGTAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCATGGGGAAATTATCTATAAAATTTATGGTTTCTGCTGTAAGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCAGTGCTAATTAGCCGATATAACGGCGATAACACGTAAGAACCACATTAACTACAGACATTTGCAGGCTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAATAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAATTGACATTTAGTGTCATTTATTAATAAAGCGCGGGAAATGAAAGGGATATCACGGCATATTTAAAGCCTTAATAATAGACTTATCTCTTATTTATATTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 462766-464414 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIXM01000007.1 Cronobacter sakazakii strain MOD1_5-21G csak5-21G_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 462766 28 100.0 32 ............................ CGGAATAAAACCGAAGCAGACCATCACGTCAG 462826 28 100.0 32 ............................ GCTGATTCGCTGCCTGCTCAAAAATAGTCCGC 462886 28 100.0 32 ............................ ATCCCTGGCGAATTTTTTCATCCATCCATGAC 462946 28 100.0 32 ............................ ACGCTGGGAGAATGTGAAATGAAACGCGCGCC 463006 28 100.0 32 ............................ AACTAGGCAGGATCACCATGAAAGAGCTGCCT 463066 28 100.0 32 ............................ GCTGCACGACGCAGGAAAGCTTCCATGCCCGT 463126 28 100.0 33 ............................ GTCCCTCGCGGCCGCGCAGGAGCTGATGCCCGG 463187 28 100.0 32 ............................ AGTACGTAGCGGATAAATACCAGGTGCCTCCC 463247 28 100.0 32 ............................ ATACCCCGAACTTCTCAATCAGAGGAATGAGC 463307 28 100.0 32 ............................ TCCATCTTGTCCAGGCGCTTTTCCATCTCGTC 463367 28 100.0 32 ............................ ATCGCGTGTTGATGCTGGCCGCAGCATCTGCA 463427 28 100.0 32 ............................ AGGGCGCTCAGATTGCCGTCATATTCGTTCTT 463487 28 100.0 32 ............................ TGCACGCCGGCGTTTTGTTTAAACGTCGCGTT 463547 28 100.0 32 ............................ GGCATTACGCCGGGTGAGGTTAAGTTCCGCTA 463607 28 96.4 32 ..........A................. TTTGCTCTATCCTCGTCAGATAAGGAATAAGC 463667 28 100.0 32 ............................ ACGTCGTCAGTTTCAAGCTCACTGCGAAGGAA 463727 28 100.0 32 ............................ CGCTACCGTGTGCTTCATTCACCGCGCGAAGT 463787 28 100.0 32 ............................ TTGTTGTGCAGGCCCGCGAACGCCTCTGTGTT 463847 28 100.0 32 ............................ GCGAACAGCAAACGGCCCGGAAACACCTCATT 463907 28 100.0 32 ............................ GTTTTAATGCCGAAGAAGGCACGGCTGACCTT 463967 28 100.0 32 ............................ TCCGGCGTTCGGTTTGCGGCGGTATCGTCCCA 464027 28 100.0 32 ............................ GTTGTGGTGAATGCGCAGGCTGATGCGCTGAT 464087 28 100.0 32 ............................ TCAGAATGGCCCAGCGATGACGGCTACCGAAG 464147 28 100.0 32 ............................ GTACGACCCGCAGATTGCTGAGTACGAGCAAA 464207 28 100.0 32 ............................ AGCGCTGCTATCAGCTCAAGAACGGCAGCGGG 464267 28 100.0 32 ............................ AATGGGGTCATTATCGGTTCCTCCGTGATGCC 464327 28 96.4 31 ......................A..... TCGAACACAGCGACGCCGTTCCCGTCGCCGC 464386 27 92.9 0 ........................-..T | T,G [464406,464409] ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCGCTGGCGGAATTAGAGGCCATGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACAGGTTCAGGGCTGGCGCACCGTGACGCGCGTACAGGTGAAAAGCAACCCCGAACGCCTGCTGCGCCGCTCGGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCGCAGCAGCGGCTTTCTGGTTTACAGGTGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCACTACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTCGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAGGGTTTTAAGAAGTAAGCAGCGTTTATATTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : TCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGCCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAATCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGAATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 313684-312923 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIXM01000005.1 Cronobacter sakazakii strain MOD1_5-21G csak5-21G_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 313683 29 100.0 32 ............................. ACATACTATGAGAGCGCAGCGGGCGAGCGTAT 313622 29 100.0 32 ............................. AGGGGATGAATCACGCGTACCCGTGCCGTGTA 313561 29 100.0 32 ............................. CTTTCGCTTCAACAGTCACTGAGCCGTCAGTG 313500 29 100.0 32 ............................. TAAAATGTTCCCATTCTCCCCTACTGGTTGCC 313439 29 93.1 32 ............T...............T TCCATCGTGTCTCTGATGAATGCGCGCGCAGT 313378 29 96.6 32 ............T................ GATAGGCTCCACATTTTTTTGTGCCGCCATGT 313317 29 89.7 32 .A..........T...............A GTAAAGCCCATTGTTCCAGCGTTGTTTTATGC 313256 29 93.1 32 .A..........T................ TAAATATTTTTTGATTACTTATTTGTGTTCAA 313195 29 100.0 32 ............................. GTCGACGGGCAGGGCCGCCCGCTCTGGCTGCC 313134 29 100.0 32 ............................. CAGCTAACGCAGGCGCGTGCGCGTCAAAACGT 313073 29 100.0 32 ............................. CCGAACTTTGTCGCGGTATTCGCGGGTTGTGC 313012 29 96.6 32 ....C........................ GCGGTGCCGCATGAGCAAAGAAGTCGAAAAGC 312951 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGTGTGCGTGAAATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 340809-340168 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIXM01000005.1 Cronobacter sakazakii strain MOD1_5-21G csak5-21G_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 340808 29 100.0 32 ............................. TTGACAAACCCGTTTTGACCACCCCTAAACCT 340747 29 100.0 32 ............................. CCAGCCAGCCCCAATGTGTCGATAAAAAGTGA 340686 29 100.0 33 ............................. CACACGGCGGCACAGACGCACTGAGCAACCTGC 340624 29 100.0 32 ............................. CGGGTGTGCCTTTTGGATGTAATTTCCACGAC 340563 29 100.0 33 ............................. CTCCGCAAACTGAAACGCGACCGTGAAGTGGCG 340501 29 100.0 32 ............................. CCAGATAACGTTAGAGATGGTGCGCTAATGCA 340440 29 96.6 31 ............................A TACGCCCAGGCGTCAGACGCATACAGGCTCG 340380 29 96.6 32 .C........................... AAGCAGACAAACTGGAAAGTTGTTATCTGGAA 340319 29 93.1 32 .C..........T................ ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 340258 29 93.1 32 .C.................A......... TACTTTGAGAAAACCGCGCAATCTGTGCTGGT 340197 29 79.3 0 .C...........C...A..A....C..T | T [340170] ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.2 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : CCCGCGTTCTTCGCGCCTGTCAATCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //