Array 1 20-2564 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLQG01000115.1 Streptococcus iniae strain QMA0371 NODE_91_length_2582_cov_43.3724_ID_5577, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 20 36 100.0 30 .................................... TTTGCAACGGTCGAAGATGTTACTGCTTTG 86 36 100.0 30 .................................... CACCTCCTCGAAGCGGTAAGACAGTTGTAA 152 36 100.0 30 .................................... CCATTTATGACTGGAAAACCGAAGATATCT 218 36 100.0 30 .................................... TAATGATTTAGTAGAGCCGTCAATGATAAC 284 36 100.0 30 .................................... GAATGAAGCTGGAGTTTATCCGAGGCATGA 350 36 100.0 30 .................................... CACCAGTTAACGTTGAAGGTAACATCGTAA 416 36 100.0 31 .................................... GTTTTCTAACTAAACTCCCTACAGTACCTAT 483 36 100.0 30 .................................... CCGATGAACACGCAGGTTGGCACATACCAT 549 36 100.0 30 .................................... TGGATAAACGATAAGAGTAATCACGGATAA 615 36 100.0 30 .................................... TGAGAGAGGTTATTCATCAGCTGTAATACA 681 36 100.0 30 .................................... GAATTTTAAATTGGTATAGTCGGAGTTGTT 747 36 100.0 30 .................................... TTCCAGCTTCTGTGTTAACATCATGCTGGT 813 36 100.0 30 .................................... CAGTGGTCTGACATGAAAGTCCAAGGAGGA 879 36 100.0 30 .................................... CATTTGGTGGAGACAAACGATGTGGAATGA 945 36 100.0 30 .................................... CGTAGCTACTCGGGCCATTTCGATAATCCA 1011 36 100.0 30 .................................... TTCGAAAAGATGACTGAAGTTCAACTCAGC 1077 36 100.0 30 .................................... ACTAGATATGTGATTGGTAAATGTTGCGAG 1143 36 100.0 30 .................................... TTTTTTTTCCCATTCTCCTGTTAAGAATGT 1209 36 100.0 30 .................................... TGACACGTTACGTTTAGAGGCTGAAAAAGT 1275 36 100.0 30 .................................... ATAGTCTTCTGACAGCGTTGCTTCATAGTA 1341 36 100.0 30 .................................... AAACTTATCAGAGATTTAAACAAAGGTAAT 1407 36 100.0 30 .................................... TTACTGCTACTAAAAGAAAAAGATTGTTTA 1473 36 100.0 30 .................................... TATGAGTGTAGAAACAACAGCATCGGCTAT 1539 36 100.0 30 .................................... GATGACGCACTCATATAGATTGCCCCGACT 1605 36 100.0 30 .................................... ATTAGCCCTGCAACACTCGCAATGACCGCA 1671 36 100.0 30 .................................... AAGCAATACGTCGATTCGTTGAGAAATAAA 1737 36 100.0 30 .................................... ACCAACTGTCTGTATCGTGTATATCCTTTA 1803 36 100.0 30 .................................... TCTTGATGAACGTATCGCAAATCAAAGACT 1869 36 100.0 30 .................................... AACGTATTGTATTTATTGCATGGGAGTCTT 1935 36 100.0 30 .................................... TTAAAACTTTCAAAGCCATCAATGTCACCA 2001 36 100.0 30 .................................... CTGACCGAACAAAGAGATTTGAGACTTGTT 2067 36 100.0 30 .................................... CTTTATAGATGCCTTGCTCAGCTAAGAGAT 2133 36 100.0 30 .................................... CAAAAAGGTAAAAGAATGGATTAGTGTTTA 2199 36 100.0 30 .................................... TTCTGTCTTGCTGGAAGCACCAGACACAGA 2265 36 100.0 30 .................................... CTGTCTTGCCACTAATGTAGACATCTCCCT 2331 36 100.0 30 .................................... AGGTGATGCCAAAGGTCAATACGTTGCTAT 2397 36 100.0 30 .................................... CGTAAAAAACTTAATGCTGCAGAAGCTCTT 2463 36 100.0 30 .................................... AGAAAAAACGATGAGTTATTCATAAAAGCT 2529 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 39 36 100.0 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : GAAAAAATTTAGCTACGAGG # Right flank : TTAATTCCTTGGTTGTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 17368-18459 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLQG01000051.1 Streptococcus iniae strain QMA0371 NODE_18_length_42517_cov_63.5913_ID_6376, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17368 36 100.0 30 .................................... AAGCGGAACAGATGACAATATATGATTTTT 17434 36 100.0 30 .................................... GCTGAAAAGACTGCTGTACTCGTTGGAATA 17500 36 100.0 30 .................................... TCCTTTTTGAGTAAAAGCTATTGTCTCATT 17566 36 100.0 30 .................................... TATACGACTATAAACAGTTGCCAGCTTCAT 17632 36 100.0 30 .................................... TATGGAAAATGTTGACTTCCACGGTAAATC 17698 36 100.0 30 .................................... TAGATCCCCGCATTTTTGACGAAAAAGCTC 17764 36 100.0 30 .................................... CGAAAGGTACTATAACCGATGAAGATATTA 17830 36 100.0 30 .................................... ACAATTATTTTATGTCAGATATTGATGAAT 17896 36 100.0 30 .................................... GTGTTCGCCGAATAAGTAGAATTAAGAAGC 17962 36 97.2 30 ..........................C......... CCTGCAAAAGATTCATATGCGATTAGTTAT 18028 36 100.0 30 .................................... CAAGTCTTGCAACAACAAGTATCCACTACA 18094 36 100.0 30 .................................... ATATATATCAATGGAAATACCAAAACGTTT 18160 36 100.0 30 .................................... TTAATTCCTTGGTTGTCAGTGTAATAGATA 18226 36 100.0 30 .................................... CGGTTTAGCTGCTCTTGAGAAGATTGTATT 18292 36 100.0 30 .................................... TTAGTATTAAATATAATATCAACACCTTTA 18358 36 100.0 30 .................................... TACAACAGTACCTATAAGTGTGGCTACACC 18424 36 75.0 0 ................T.....TG..T.T.TTT..G | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 98.4 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG # Right flank : GGCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //