Array 1 712332-715137 **** Predicted by CRISPRDetect 2.4 *** >NC_017581.1 Streptococcus thermophilus JIM 8232, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 712332 36 100.0 30 .................................... ATGAGGTCGAGAAGGAAAAACGATATGCAG 712398 36 100.0 30 .................................... ATCCTCAATAGCATTGACAAAGTCTTTTCT 712464 36 100.0 30 .................................... TCAATCTTCCTGTCTTTGAAATATTTCTTT 712530 36 100.0 30 .................................... TTGGAATTTAACGTTTGAAGAACGGAAGAA 712596 36 100.0 30 .................................... GTGGTCTTTCGTGGGTGCTGCGCTCTGGTT 712662 36 100.0 30 .................................... ACTAAAATCATTTTCAACGAGTTGAGAGAC 712728 36 100.0 30 .................................... TATATTCGCGAGGGTGATATAGTCGTGGTG 712794 36 100.0 30 .................................... CATATATGATAGTTTGTCAACACCTTTTAT 712860 36 100.0 30 .................................... TAAATGGGTTATGCTGTTCAATATGCGTCC 712926 36 100.0 30 .................................... AAACTTGCCAGCAATCGGAATGTAAAGGCC 712992 36 100.0 30 .................................... TTAGACCCTAAAGAGGTAGAGCGCCATATA 713058 36 100.0 30 .................................... AAAAGGTTGGCTAGTGTAATAAGTTCGTCA 713124 36 100.0 30 .................................... TACCATTGTTTCTCTCCACCGTGGAAGGTT 713190 36 100.0 30 .................................... GGCATTAGACAGATACATTGATAGCCAACT 713256 36 100.0 30 .................................... AAGAAGCAGCAAGATGCATCAAACACCGCA 713322 36 100.0 30 .................................... TGAAAATCTCACTAGTCCATTAGTGCGGTT 713388 36 100.0 30 .................................... ATCACCCAACTTTCTTGTGCTTTCTAAGTG 713454 36 100.0 30 .................................... GCTTAGCTGTCCAATCCACAAACGTGGATG 713520 36 100.0 30 .................................... GCTAACTTAAGCAAGCAGTACGAAAAGCAG 713586 36 100.0 30 .................................... AAAAAAGATGGTATCAATTATCTAGAATTG 713652 36 100.0 29 .................................... CTCTTAAGGTCATTTCAGTGTCTTGGTTA 713717 36 100.0 30 .................................... ATTGTCTATTACGACAACATGGAAGATAGT 713783 36 100.0 30 .................................... TACACTAGTAGTTGTGTCCCAAATTTTAGA 713849 36 100.0 30 .................................... ACTAAAATCATTTTCAACGAGTTGAGAGAC 713915 36 100.0 30 .................................... TATATTCGCGAGGGTGATATAGTCGTGGTG 713981 36 100.0 30 .................................... TAGGGATATGAAGCCCAAATTGTTGCAATG 714047 36 100.0 31 .................................... TTTCCCGGTGTATAGATTGGCTCTATAGTCT 714114 36 100.0 30 .................................... TATATATAAGTTTCCGAAAGTAGACGAACC 714180 36 100.0 30 .................................... CATTATTAAACCCATGCTTTTTACCACACT 714246 36 100.0 30 .................................... CATTATTAAACCCATGCTTTTTACCACACT 714312 36 100.0 30 .................................... AGCCGATAGTTAAATCAACTGATTGTGGAT 714378 36 100.0 30 .................................... CGTGCTACAAATCTCTTTACGACAATTTAG 714444 36 100.0 30 .................................... TTTTTTTGATACATTTAAGGGCGCTTTCAT 714510 36 100.0 30 .................................... ACGAGAGTCTTTCAGTCTATCCATTGCCTG 714576 36 100.0 30 .................................... CATTTTCCGTTTTTTTTGTCTCTACCCCAT 714642 36 100.0 29 .................................... AGCTGTGATAACACGAAGAGAACTCTAGA 714707 36 100.0 31 .................................... AAACATTGATGAGTATTATTGAAAAACTTCA 714774 36 100.0 30 .................................... GGGTCAAGGTATAAGATAGAGTTTTCTATA 714840 36 100.0 29 .................................... TAGGTACTTTAACCTGACCAGATACAATC 714905 36 100.0 30 .................................... CCTCAAAGCTTAAAATTGGGCTGAAGTAGA 714971 36 100.0 29 .................................... AGGTTGTAACAAAAAAGATGCTAACAAGA 715036 36 100.0 30 .................................... TAATGCTACATCTCAAAGGATGATCCCAGA 715102 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 43 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGAAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAATGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGA # Right flank : TTTGAGTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 969817-971087 **** Predicted by CRISPRDetect 2.4 *** >NC_017581.1 Streptococcus thermophilus JIM 8232, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 969817 36 100.0 39 .................................... CTTGATTCTAACGCTACTTCTAAATAAGCGTTAGCAATG 969892 36 100.0 36 .................................... AGTTCTAAAGCATTCATCATATGTTTATGTTCTTTA 969964 36 100.0 35 .................................... TTCCAAAATTAATTCTTTGATGTCGTTATTTATTA 970035 36 100.0 36 .................................... ATCCAGTTCTGCAAAGAACAGCATAGAGGTTTTACC 970107 36 100.0 37 .................................... TTTTAATTCTTCTAAGTTATCGCTGAATGGATAGAAC 970180 36 100.0 37 .................................... ACTGTTTCTGTTTGCTTGTTTGACCAAATCCAGTTAA 970253 36 100.0 38 .................................... AATTGGATAGCGCAGGCTACCAAACTTCTAAGATGATT 970327 36 100.0 37 .................................... TCTTGTTGGCGTTTTTCAATAACTTTCTTATCAATCA 970400 36 100.0 35 .................................... TTCCAAAATTAATTCTTTGATGTCGTTATTTATTA 970471 36 100.0 36 .................................... ATCCAGTTCTGCAAAGAACAGCATAGAGGTTTTACC 970543 36 100.0 37 .................................... TTTTAATTCTTCTAAGTTATCGCTGAATGGATAGAAC 970616 36 100.0 37 .................................... ACTGTTTCTGTTTGCTTGTTTGACCAAATCCAGTTAA 970689 36 100.0 38 .................................... AATTGGATAGCGCAGGCTACCAAACTTCTAAGATGATT 970763 36 100.0 37 .................................... TCTTGTTGGCGTTTTTCAATAACTTTCTTATCAATCA 970836 36 100.0 36 .................................... TGAGAAACATAGAAAACATGGTATGAATTATCATAG 970908 36 97.2 36 ......G............................. CCATATACTCTAGCATTTCCATACACTTTAGCATTT 970980 36 100.0 36 .................................... TTAACGAAGTTGTCATCAATCATTACTCCTTGCCTG 971052 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ======================================= ================== 18 36 98.9 37 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATTCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGTCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACAATATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGTCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACAATATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGGGTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCACGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTGTTAGAGATTTTCAATAGCGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1452516-1452282 **** Predicted by CRISPRDetect 2.4 *** >NC_017581.1 Streptococcus thermophilus JIM 8232, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1452515 35 91.7 30 -.....AC............................ AAAAAAGCCTTGAAGCTGGTAGCAAGAGAA CT [1452507] 1452448 36 100.0 29 .................................... TCGTGGTCGCTGGTCGCTGTATTGACGAT 1452383 36 100.0 30 .................................... GAAAGAACACAAGGATATCTATGAGAGAGA 1452317 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TGTGGATGAACTCCACTCACGTGGCTTCAAGGTAGGTTTAGTTTCTGGTGGTTTCCATGAGACAGTTGATAGACTGGCAAGAGAGGCAGGTATTGATTATGTGAAGGCCAATCACCTTGAGGTGATCGATGGTTTCTTAACTGGAAAGGTTTATGGTGAGATTGTTACCAAAGATGTCAAGGTAGCTAAGCTTAAAGATTGGGCAGCGGAAAATGGACTTAAACTCTCTCAAACCATTGCTATGGGTGATGGAGCCAATGATTTGCCTATGATTAAGACAGCCGGCATAGGCATCGCCTTTTGTGCCAAACCAATTGTCCGTGCACAAGCTCCTTATCAGATCACAGAACCAGATTTGTATAAGGTCATTGAGATCTTGGATGAGGTGGGAAAATAGTAGAGATAAAAGAGTCCTTTGGATGATTCCAAGGGACTCTTTGTGTATAAAAAAAACACCGAATCGGTGCCACCTTTTCAAGTTGAGTACGGACTAAGCCTTA # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTGATGTTATGACGAAATCGTCAGTATTTTTTGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //