Array 1 485951-487502 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUL010000002.1 Listeria innocua strain FSL L7-1062 NODE_2_length_492929_cov_72.100052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 485951 36 100.0 30 .................................... TTAAAGTTAAAATAATTAAAGTACTCTTTT 486017 36 100.0 30 .................................... AAAGCTATATTTAACGCTTTCTCTTTGTTT 486083 36 100.0 30 .................................... TAGTAAGCGGATTTAACGCAGCTAAAGCGG 486149 36 100.0 30 .................................... ACTACTGGACAGACACATTAGCAATCAACT 486215 36 100.0 30 .................................... CTGGTATGCTAGTTTCGAGGTAAGTTACAT 486281 36 100.0 31 .................................... ATAGATATTCACGTCAATTGGTTTTTCATTT 486348 36 100.0 30 .................................... GTTTCAAATTGAACTAGAAAAACTGCGAGA 486414 36 100.0 30 .................................... TGATTATAAAGAACTTTGGTTTGAACGAGA 486480 36 100.0 30 .................................... AAGCGGGAAGAAATTCCTTTGAGGAAATGA 486546 36 100.0 30 .................................... AATTTCGTAGTTTGCAACTGCTCCACTCCA 486612 36 100.0 30 .................................... TTTTAGCTACATCTGGGTTTTCCATCATAA 486678 36 100.0 30 .................................... TGAAAAGGATGCGGTAGGTGTGAGTGGTTG 486744 36 100.0 30 .................................... CGAACAAAAATTACAAAGCTACTGCTGGTG 486810 36 100.0 30 .................................... TGAGTGGCGAAGGGAAGTGCGTGCCAGATG 486876 36 100.0 28 .................................... CTGATGGACAATCTTATGACAATTGATA 486940 36 100.0 30 .................................... TGACGTCCGGCCATTTTATCGCCTTCATGG 487006 36 100.0 30 .................................... TAGCAACGATGCTGAATCTCTATTCATGTT 487072 36 100.0 30 .................................... GAAAATAAGTGACGCTGTTGGAGAAAGTCC 487138 36 100.0 30 .................................... AGGTTTGAAAAGGGTTGATGTCCAAGCTCG 487204 36 97.2 30 .........T.......................... CCACGATTGTGCCGATTTATCAAAAAGACG 487270 36 100.0 30 .................................... TTCATCACCGAAAATTACACTTCGGTACAT 487336 36 100.0 30 .................................... AATGCTTTTTGAGATTCTTTTACACTTTTG 487402 36 100.0 30 .................................... AGAGAGGGTGAACTCTAAATAATCGGAAAT 487468 35 88.9 0 ....................C....A....-...C. | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 99.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACTGCGACGATTAGTGAGCTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACGGTTATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCATTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAACGTATGTGCCTATTTAACAGAAGATGAGTTACAAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGCAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGTTCAAATGATCTTTGAAAACTAAATAAATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG # Right flank : CCATCTCTCAATCCACTCCAGCTAGAAAAAGTTACACCATTATGAAAGAAGGACTCAACACATGACACAATACCACTACCTCGCTTCAAAAGCAGCACTAAAAACTACGACACACGAAAATAAGACAAATTTTATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAACATTTTAACCCAACCTGCAATTTCCAAGTCGCTATAAGTGAAGGTAAATTACCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATATCCTTGAACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCCATAGAAAATTTAATGCCAGAAAATTTGATTTTAAGAGACAGAGAACTATTGATAATTAAAAATAAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 554884-553426 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUL010000001.1 Listeria innocua strain FSL L7-1062 NODE_1_length_839200_cov_61.473444, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 554883 29 100.0 34 ............................. TTACTTCGCGAAGAACACCATTCACCACGCTGGC 554820 29 100.0 38 ............................. ACTTGATTTGACGGGTCTACTGGAGTGATTGGATCTAC 554753 29 100.0 36 ............................. AGGAGTGGAAGAAGGTAAGAGCAAAAGCAAGAGAGC 554688 29 100.0 36 ............................. AGAATAATTGCAATTGTAACTAGAGAAGATGATTAT 554623 29 100.0 38 ............................. CAGGTCACTGAGAATGGCTTTACAAGGCGGTTGGTATT 554556 29 100.0 38 ............................. ATGTTTGTTTTATGTTCCAGGCAGTAAAGAATGCCTTT 554489 29 100.0 37 ............................. ATGCTATCCAAAACGGACTTTAAATCAAGTCCAGTTC 554423 29 100.0 37 ............................. ATTCTTGAACCAGCTCAGACCCTCGACGCTTACAAAC 554357 29 100.0 34 ............................. TATACTTACAGAGTCACCGCTCTTTTCCGGCGTC 554294 29 100.0 37 ............................. ACGTTCTGCAAACTTTAAACAATAGGCCCGGTCATTC 554228 29 100.0 35 ............................. AATTCTGCACAGAATTTACCAAGCGCAATCATCAA 554164 29 100.0 35 ............................. TTGTATTGAAAAAAAGAACTAGAAATTTACTTTTT 554100 29 100.0 34 ............................. ATGCCTATCTTGCGCGGTTAAAGTGAACATTTCC 554037 29 100.0 36 ............................. TAATTCTAAAAATCCTTTTTTATTGTCGTACCACGA 553972 29 100.0 35 ............................. AAATTTGGCGGCGTAATCTTGTACATGGTTGTCAT 553908 29 100.0 35 ............................. TTGTCCAGCATATCTTTTCCGAATGAACCTAATTT 553844 29 100.0 38 ............................. AGACTAATTACTTGTTGTTTAGCTTTGTTCGTTTCTGC 553777 29 100.0 35 ............................. ACGACAAAAGGCGTTAGCGACAGCGCAAAAGCATT 553713 29 100.0 36 ............................. TTGTACTAGGTGCAGGTGCGTCGTTCTTGTCAAACA 553648 29 100.0 35 ............................. AAATCTGTGCATATTTATGCCTTTGGAGGAATTGA 553584 29 100.0 37 ............................. GTCACTACAGCGATGTATATCATCACCTGGAACTGGA 553518 29 100.0 35 ............................. ATGAGTTCAGTAGCACTTAATCCGCCCCTTAACAT 553454 29 86.2 0 ........C..............C...GC | ========== ====== ====== ====== ============================= ====================================== ================== 23 29 99.4 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGCGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TCCTCCCCTCAACAATACACTCCCAAAATAAAAAGATGAACCTCAGTCCAAATCTTTTTCAATACTACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCTGGCAAGCCCTGCTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCAACACCAAACGTCTTAGATGCGAGGTTGGTATTAGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCAGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 571836-571352 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUL010000001.1 Listeria innocua strain FSL L7-1062 NODE_1_length_839200_cov_61.473444, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 571835 29 100.0 35 ............................. TCTTTTCTACTTTCTTACAAAACGCTTTTAACTTT 571771 29 100.0 37 ............................. TCAGCTAGGTAGCGTGCATCTGGACGTTGTAAACCAA 571705 29 100.0 37 ............................. CTCCATATTTTTTAGCTCGATTAGTAAATTGTTCAAA 571639 29 93.1 36 ..............A...G.......... GATTTAAAGTTAGATATAAATAATGTGATTTTAGTT 571574 29 93.1 36 ..........A.......G.......... GAAACACTTGTTTACGGTGATTACACGTTAGTAGAA 571509 29 93.1 36 ..............A...G.......... ATTCCCGACTTATTTAAAAGTAATACTTGTTGCATC 571444 29 89.7 35 ..............AC..G.......... TTGATTTTTCGAATATCTCGTAATGTCTCACTTAT 571380 29 86.2 0 ......A........CA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 94.4 36 GTTTTAGTTACTTATTGTAAAATGTAAAT # Left flank : GTGTACGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTGCAAAACTCAAGAATCAAAGAAGTTATTACATCCGACTCTATCGACCTTCCTGAAGAAAAACAATTCGAAAAACTAACCACGATCTCCATTGGACGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTGTTTTAAAGAATAAGTAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAACACTGGGAATCGACAGAAATTTGTAAGTGGCTGGGGGAAGATGTGCTTGGTGATATTTGCTTGGGAAAATCTTCCGGATAAGGGGAGATTTTAGATGTTTTTTGTTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATTGGAGTAAGAAGAAAAGTTAGCGG # Right flank : ACCCTTCATATACAACTCCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGTTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTATATTTGCCGTAGCCCATGCTGATAATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATGGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCACTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTAAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //