Array 1 40106-39015 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AFEU01000003.1 Bacillus methanolicus PB1 contig_3, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
     40105	    32	 100.0	    35	................................	ATCGTTAAGTCCGTAATTTTTCATTTCTTCATACC  	
     40038	    32	 100.0	    34	................................	TTTCCGTAAATCTATTAAACTACTACACCGAGAA   	
     39972	    32	 100.0	    35	................................	TTTCTAATAAAAAATTAAACCAAGTGGAATGATCA  	
     39905	    32	 100.0	    34	................................	GGAACGAATTTTTCTCCGTCAAAATAGCCTCGAT   	
     39839	    32	  96.9	    27	...............................A	TCTTATAACCCCCATTTGCTTTTATCG          	Deletion [39781]
     39780	    32	 100.0	    34	................................	ATTCACAAAGTAGACCTAACTCAACTAAGCACAA   	
     39714	    32	 100.0	    34	................................	GTAATGTGCATTAGGACTTCATAATTGTGAAAGC   	
     39648	    32	 100.0	    34	................................	CTGCTGTTCAAGCATGAGTTTGATTGGCTCTTGG   	
     39582	    32	 100.0	    35	................................	TTCCGGGAAGTATAGGGGAACTCCATCCGGAACAC  	
     39515	    32	 100.0	    36	................................	TGATGCTTGCGGAGAGCGATTAGGAAAGAGGATTGA 	
     39447	    32	 100.0	    36	................................	ATATGCTTATCAATCCTACAAATGAAACATTTTTGC 	
     39379	    31	  96.9	    34	.....-..........................	TTGAACGTTGAGCGCCACATTCCCGGCTATATCA   	
     39314	    32	 100.0	    35	................................	CCGCACCCAATCGTCTTTAATATCGCTCATTGCCC  	
     39247	    32	 100.0	    37	................................	TCGGTGAACTCAACGAAAACTCATCGGCTTGCTTGGG	
     39178	    32	 100.0	    34	................................	GATTGGCAACGCTCTGAGCTTAATGGGCTTTCCG   	
     39112	    32	 100.0	    34	................................	CAATATGTAAATGACTTTAACAACATGGGATTAT   	
     39046	    32	  93.8	     0	.........A..........T...........	|                                    	
==========	======	======	======	================================	=====================================	==================
        17	    32	  99.3	    34	GTCGCATCCTACATGGATGCGTGGATTGAAAT	                                     	       

# Left flank :   AGATGAGTACCCACCTTTTTTATGGAAGTAGGTGTAACATTTGTTGGTATTAATTACGTATGATGTAAGTACTGTTAGCAGCGCAGGACAAAAAAGACTGAGGAAAGTTTCAAAAGTATGTCAAAACTATGGTCAGCGCGTCCAAAATTCGGTATTTGAATGTATTGTAGATTCCACTCAATTTGCCTCTTTAAAAATAGAACTTGCAAATATTATTGATGAGGAACAAGATAGCCTCAGATTCTATCAGTTAGGTAATAATTATAAGTCAAAAGTGGAACATATTGGTGTAAAACCATCAGTTGATTTAGAGGGACCTTTAATTTTTTAGTGCGAATGTGTAGCGTACATAAATTTTCTGATATATTCGCACCTCAAAATTGATATCTTTTGGCCAAATTTAATATTTTTATAATAAAGTTCTTTATTCTTAATAAAGAAAATAGCGATTTTTTGATCAAAATAACATTAATTAACAGTTATTTTGATCAAAAATCGCT
# Right flank :  AAGTGGAACAAGTGATGTCACATTGCCAGTCAAAAAGGGACAAGCGTATCCATTTTACTACGTGTCAATCTCCGAAATTCCGTTCCAAACGCGCAATTGAATATGGCAGGTGTACCAACACAATTTGGAATTGTTGAAATAGCAATCCCTCATGCAATTGCTTTAGCAAAAAGTTTGCCAAACGTAAGGCTTCTCGGTTTTCATTTTCACGCAATATCTAATAACTGCGATTCTAAAACCGACGCAGATTTTATGGACCATTGTTTTGAAACGTCAAAAAGGTGGGGAGCGGAGTGGAACATAGATATTTCCTATTTAAATGTAGGCGGTGGCATCGGAATTAACTACCTTTTTAACTGGGGGGACTTTACGAATCGTTTGGAAAAAACACTTGAAAAACATCGCGACTGCAGTTGGAAGTTACTGTTCGAATGTGGACGCTATATCACTTCTTCTTGCGGATATTATGCAGCGGAGGTATTGGATATTAAACAAAACCA

# Questionable array : NO	 Score: 9.21
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.00, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCATCCTACATGGATGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.12%AT]
# 	Reference repeat match prediction:         R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-3.60,-3.50] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [8-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,9.68   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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